Clone Sequence Records
BS14251.complete Sequence
1301 bp assembled on 2009-12-07
GenBank Submission: KX805345
> BS14251.complete
GAAGTTATCAGTCGACATGGCTTTGCGCGGTTCCCACCGCTTGGAAGTGA
TCTTCAAACGCTGCATTGCCTCCCCGGTGTTACACAGTCATGCAGCCAAT
CGGAGGAGCAGTCAACTAGCGATCAAAGAAGGCGATCCAAACAGCAATGG
TAACAGTGGGCAATATCAGCAAAATGGTGAACAAAAAGAAAAAGGCTGGA
GACGATTGGTTCGATTCTTTGTGCCCTTCTCCCTGGGCGCTGTGGTCAGT
GCGGCGATCATCCAGCGGGAAGACTTAACGCCAACGATCGCCGCTTCCAA
AATGACCGGTCGTCGGCGGGACTTCAACTTTATAGCTGATGTGGTGGCAG
GTTGTGCGGATTCGGTGGTCTACATTGAGATTAAGGACACCCGCCACTTT
GACTACTTCAGCGGCCAACCGATTACGGCATCGAATGGTTCCGGCTTCAT
TATTGAGCAGAACGGTCTCATCCTTACCAACGCCCATGTGGTGATCAACA
AACCACACACAATGGTACAGGTGAGGCTATCCGATGGCAGGACTTTTCCC
GCCACCATCGAGGACGTGGATCAGACATCCGATCTGGCGACTTTGCGCAT
ACAGGTGAACAATCTTTCGGTGATGCGGCTAGGCAAGAGCAGTACCCTGC
GATCCGGCGAGTGGGTTGTGGCCTTAGGCAGTCCGCTGGCCCTAAGCAAT
ACGGTGACAGCAGGCGTAATCAGTTCAACGCAGCGTGCATCTCAAGAACT
TGGCCTTCGAAACAGGGATATCAACTACCTGCAAACGGATGCTGCGATTA
CGTTTGGCAACTCCGGCGGTCCCTTGGTCAATCTGGATGGCGAGGCTATT
GGAGTTAACTCGATGAAGGTGACGGCTGGCATTAGCTTCGCAATACCCAT
TGACTATGTAAAGGTGTTTCTGGAGCGGGCGGCCGAGAAACGAAAGAAGG
GCTCGGCCTACAAGACTGGCTATCCGGTGAAGCGGTACATGGGCATCACC
ATGCTGACGCTCACACCGGATATTCTGTTCGAGCTCAAGTCACGAAGCCA
AAACATGCCCAGCAACTTAACGCACGGCGTGCTCGTGTGGAAGGTTATCG
TTGGGTCACCGGCGCACAGTGGTGGACTCCAACCCGGAGACATAGTGACC
CACATAAACAAGAAGGAGATCAAGAACTCATCGGATGTCTACGATGCCCT
GGCGGATAATAGTAAAACTCTAGATATAGTGATCCTGCGAGGTGTGAAGC
AGATGCACGTGACCATTACGCCAGAAGATCCCTAGAAGCTTTCTAGACCA
T
BS14251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HtrA2-RB | 1269 | CG8464-PB | 1..1269 | 17..1285 | 6330 | 99.9 | Plus |
HtrA2-RA | 1269 | CG8464-PA | 1..1269 | 17..1285 | 6330 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HtrA2-RB | 2512 | CG8464-RB | 306..1575 | 16..1285 | 6335 | 99.9 | Plus |
HtrA2-RA | 1415 | CG8464-RA | 54..1323 | 16..1285 | 6335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14510817..14511407 | 606..16 | 2940 | 99.8 | Minus |
3R | 32079331 | 3R | 14510236..14510755 | 1119..600 | 2600 | 100 | Minus |
3R | 32079331 | 3R | 14509986..14510153 | 1285..1118 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:07:32 has no hits.
BS14251.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:54 Download gff for
BS14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 287..1555 | 17..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:33 Download gff for
BS14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 55..1323 | 17..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:54 Download gff for
BS14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 287..1555 | 17..1285 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:31 Download gff for
BS14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 55..1323 | 17..1285 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:31 Download gff for
BS14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14509986..14510151 | 1120..1285 | 100 | <- | Minus |
3R | 14510236..14510750 | 605..1119 | 100 | <- | Minus |
3R | 14510819..14511406 | 17..604 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:33 Download gff for
BS14251.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10335708..10335873 | 1120..1285 | 100 | <- | Minus |
arm_3R | 10335958..10336472 | 605..1119 | 100 | <- | Minus |
arm_3R | 10336541..10337128 | 17..604 | 99 | | Minus |
BS14251.3prime Sequence
646 bp (603 high quality bases) assembled on 2006-10-13
> BS14251.3prime
ATGGTCTAGAAAGCTTCTAGGGATCTTCTGGCGTAATGGTCACGTGCATC
TGCTTCACACCTCGCAGGATCACTATATCTAGAGTTTTACTATTATCCGC
CAGGGCATCGTAGACATCCGATGAGTTCTTGATCTCCTTCTTGTTTATGT
GGGTCACTATGTCTCCGGGTTGGAGTCCACCACTGTGCGCCGGTGACCCA
ACGATAACCTTCCACACGAGCACGCCGTGCGTTAAGTTGCTGGGCATGTT
TTGGCTTCGTGACTTGAGCTCGAACAGAATATCCGGTGTGAGCGTCAGCA
TGGTGATGCCCATGTACCGCTTCACCGGATAGCCAGTCTTGTAGGCCGAG
CCCTTCTTTCGTTTCTCGGCCGCCCGCTCCAGAAACACCTTTACATAGTC
AATGGGTATTGCGAAGCTAATGCCAGCCGTCACCTTCATCGAGTTAACTC
CAATAGCCTCGCCATCCAGATTGACCAAGGGACCGCCGGAGTTGCCAAAC
GTAATCGCAGCATCCGTTTGCAGGTAGTTGATATCCCTGTTTCGAAGGCC
AAGTTCTTGAGATGCACGCTGCGTTGAACTGATTACGCCTGCTGTCACCG
TATTGCTTAAGGCCAGCGGACTGCCTAAGGCCACAACCCACTCGCC
BS14251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8464-PA | 1269 | CG8464-RA | 640..1269 | 646..17 | 3125 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:22:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HtrA2-RB | 2512 | CG8464-RB | 946..1575 | 646..17 | 3135 | 99.8 | Minus |
HtrA2-RA | 1415 | CG8464-RA | 694..1323 | 646..17 | 3135 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14510236..14510699 | 183..646 | 2305 | 99.8 | Plus |
3R | 32079331 | 3R | 14509986..14510153 | 17..184 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:22:41 has no hits.
BS14251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:30 Download gff for
BS14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8464-PA | 640..1269 | 17..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:38:57 Download gff for
BS14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 694..1326 | 10..646 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:44 Download gff for
BS14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 694..1326 | 10..646 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:44 Download gff for
BS14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14509983..14510151 | 10..182 | 97 | <- | Plus |
3R | 14510236..14510699 | 183..646 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:38:57 Download gff for
BS14251.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10335705..10335873 | 10..182 | 97 | <- | Plus |
arm_3R | 10335958..10336421 | 183..646 | 99 | | Plus |
BS14251.5prime Sequence
529 bp (526 high quality bases) assembled on 2006-10-13
> BS14251.5prime
GAAGTTATCAGTCGACATGGCTTTGCGCGGTTCCCACCGCTTGGAAGTGA
TCTTCAAACGCTGCATTGCCTCCCCGGTGTTACACAGTCATGCAGCCAAT
CGGAGGAGCAGTCAACTAGCGATCAAAGAAGGCGATCCAAACAGCAATGG
TAACAGTGGGCAATATCAGCAAAATGGTGAACAAAAAGAAAAAGGCTGGA
GACGATTGGTTCGATTCTTTGTGCCCTTCTCCCTGGGCGCTGTGGTCAGT
GCGGCGATCATCCAGCGGGAAGACTTAACGCCAACGATCGCCGCTTCCAA
AATGACCGGTCGTCGGCGGGACTTCAACTTTATAGCTGATGTGGTGGCAG
GTTGTGCGGATTCGGTGGTCTACATTGAGATTAAGGACACCCGCCACTTT
GACTACTTCAGCGGCCAACCGATTACGGCATCGAATGGTTCCGGCTTCAT
TATTGAGCAGAACGGTCTCATCCTTACCAACGCCCATGTGGTGATCAACA
AACCACACACAATGGTACAGGTGAGGCTA
BS14251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8464-PA | 1269 | CG8464-RA | 1..513 | 17..529 | 2540 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HtrA2-RB | 2512 | CG8464-RB | 306..819 | 16..529 | 2555 | 99.8 | Plus |
HtrA2-RA | 1415 | CG8464-RA | 54..567 | 16..529 | 2555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14510894..14511407 | 529..16 | 2555 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:20:19 has no hits.
BS14251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:30 Download gff for
BS14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8464-PA | 1..512 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:18 Download gff for
BS14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 54..566 | 16..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:29 Download gff for
BS14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HtrA2-RA | 54..566 | 16..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:29 Download gff for
BS14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14510895..14511407 | 16..528 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:18 Download gff for
BS14251.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10336617..10337129 | 16..528 | 99 | | Minus |
BS14251.pep Sequence
Translation from 16 to 1284
> BS14251.pep
MALRGSHRLEVIFKRCIASPVLHSHAANRRSSQLAIKEGDPNSNGNSGQY
QQNGEQKEKGWRRLVRFFVPFSLGAVVSAAIIQREDLTPTIAASKMTGRR
RDFNFIADVVAGCADSVVYIEIKDTRHFDYFSGQPITASNGSGFIIEQNG
LILTNAHVVINKPHTMVQVRLSDGRTFPATIEDVDQTSDLATLRIQVNNL
SVMRLGKSSTLRSGEWVVALGSPLALSNTVTAGVISSTQRASQELGLRNR
DINYLQTDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKV
FLERAAEKRKKGSAYKTGYPVKRYMGITMLTLTPDILFELKSRSQNMPSN
LTHGVLVWKVIVGSPAHSGGLQPGDIVTHINKKEIKNSSDVYDALADNSK
TLDIVILRGVKQMHVTITPEDP*
BS14251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HtrA2-PB | 422 | CG8464-PB | 1..422 | 1..422 | 2140 | 100 | Plus |
HtrA2-PA | 422 | CG8464-PA | 1..422 | 1..422 | 2140 | 100 | Plus |