Clone BS14251 Report

Search the DGRC for BS14251

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptHtrA2-RA
Protein status:BS14251.pep: full length peptide match
Sequenced Size:1301

Clone Sequence Records

BS14251.complete Sequence

1301 bp assembled on 2009-12-07

GenBank Submission: KX805345

> BS14251.complete
GAAGTTATCAGTCGACATGGCTTTGCGCGGTTCCCACCGCTTGGAAGTGA
TCTTCAAACGCTGCATTGCCTCCCCGGTGTTACACAGTCATGCAGCCAAT
CGGAGGAGCAGTCAACTAGCGATCAAAGAAGGCGATCCAAACAGCAATGG
TAACAGTGGGCAATATCAGCAAAATGGTGAACAAAAAGAAAAAGGCTGGA
GACGATTGGTTCGATTCTTTGTGCCCTTCTCCCTGGGCGCTGTGGTCAGT
GCGGCGATCATCCAGCGGGAAGACTTAACGCCAACGATCGCCGCTTCCAA
AATGACCGGTCGTCGGCGGGACTTCAACTTTATAGCTGATGTGGTGGCAG
GTTGTGCGGATTCGGTGGTCTACATTGAGATTAAGGACACCCGCCACTTT
GACTACTTCAGCGGCCAACCGATTACGGCATCGAATGGTTCCGGCTTCAT
TATTGAGCAGAACGGTCTCATCCTTACCAACGCCCATGTGGTGATCAACA
AACCACACACAATGGTACAGGTGAGGCTATCCGATGGCAGGACTTTTCCC
GCCACCATCGAGGACGTGGATCAGACATCCGATCTGGCGACTTTGCGCAT
ACAGGTGAACAATCTTTCGGTGATGCGGCTAGGCAAGAGCAGTACCCTGC
GATCCGGCGAGTGGGTTGTGGCCTTAGGCAGTCCGCTGGCCCTAAGCAAT
ACGGTGACAGCAGGCGTAATCAGTTCAACGCAGCGTGCATCTCAAGAACT
TGGCCTTCGAAACAGGGATATCAACTACCTGCAAACGGATGCTGCGATTA
CGTTTGGCAACTCCGGCGGTCCCTTGGTCAATCTGGATGGCGAGGCTATT
GGAGTTAACTCGATGAAGGTGACGGCTGGCATTAGCTTCGCAATACCCAT
TGACTATGTAAAGGTGTTTCTGGAGCGGGCGGCCGAGAAACGAAAGAAGG
GCTCGGCCTACAAGACTGGCTATCCGGTGAAGCGGTACATGGGCATCACC
ATGCTGACGCTCACACCGGATATTCTGTTCGAGCTCAAGTCACGAAGCCA
AAACATGCCCAGCAACTTAACGCACGGCGTGCTCGTGTGGAAGGTTATCG
TTGGGTCACCGGCGCACAGTGGTGGACTCCAACCCGGAGACATAGTGACC
CACATAAACAAGAAGGAGATCAAGAACTCATCGGATGTCTACGATGCCCT
GGCGGATAATAGTAAAACTCTAGATATAGTGATCCTGCGAGGTGTGAAGC
AGATGCACGTGACCATTACGCCAGAAGATCCCTAGAAGCTTTCTAGACCA
T

BS14251.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-RB 1269 CG8464-PB 1..1269 17..1285 6330 99.9 Plus
HtrA2-RA 1269 CG8464-PA 1..1269 17..1285 6330 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-RB 2512 CG8464-RB 306..1575 16..1285 6335 99.9 Plus
HtrA2-RA 1415 CG8464-RA 54..1323 16..1285 6335 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14510817..14511407 606..16 2940 99.8 Minus
3R 32079331 3R 14510236..14510755 1119..600 2600 100 Minus
3R 32079331 3R 14509986..14510153 1285..1118 840 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:07:32 has no hits.

BS14251.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:54 Download gff for BS14251.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 287..1555 17..1285 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:33 Download gff for BS14251.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 55..1323 17..1285 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:52:54 Download gff for BS14251.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 287..1555 17..1285 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:31 Download gff for BS14251.complete
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 55..1323 17..1285 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:31 Download gff for BS14251.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14509986..14510151 1120..1285 100 <- Minus
3R 14510236..14510750 605..1119 100 <- Minus
3R 14510819..14511406 17..604 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:33 Download gff for BS14251.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10335708..10335873 1120..1285 100 <- Minus
arm_3R 10335958..10336472 605..1119 100 <- Minus
arm_3R 10336541..10337128 17..604 99   Minus

BS14251.3prime Sequence

646 bp (603 high quality bases) assembled on 2006-10-13

> BS14251.3prime
ATGGTCTAGAAAGCTTCTAGGGATCTTCTGGCGTAATGGTCACGTGCATC
TGCTTCACACCTCGCAGGATCACTATATCTAGAGTTTTACTATTATCCGC
CAGGGCATCGTAGACATCCGATGAGTTCTTGATCTCCTTCTTGTTTATGT
GGGTCACTATGTCTCCGGGTTGGAGTCCACCACTGTGCGCCGGTGACCCA
ACGATAACCTTCCACACGAGCACGCCGTGCGTTAAGTTGCTGGGCATGTT
TTGGCTTCGTGACTTGAGCTCGAACAGAATATCCGGTGTGAGCGTCAGCA
TGGTGATGCCCATGTACCGCTTCACCGGATAGCCAGTCTTGTAGGCCGAG
CCCTTCTTTCGTTTCTCGGCCGCCCGCTCCAGAAACACCTTTACATAGTC
AATGGGTATTGCGAAGCTAATGCCAGCCGTCACCTTCATCGAGTTAACTC
CAATAGCCTCGCCATCCAGATTGACCAAGGGACCGCCGGAGTTGCCAAAC
GTAATCGCAGCATCCGTTTGCAGGTAGTTGATATCCCTGTTTCGAAGGCC
AAGTTCTTGAGATGCACGCTGCGTTGAACTGATTACGCCTGCTGTCACCG
TATTGCTTAAGGCCAGCGGACTGCCTAAGGCCACAACCCACTCGCC

BS14251.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8464-PA 1269 CG8464-RA 640..1269 646..17 3125 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-RB 2512 CG8464-RB 946..1575 646..17 3135 99.8 Minus
HtrA2-RA 1415 CG8464-RA 694..1323 646..17 3135 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14510236..14510699 183..646 2305 99.8 Plus
3R 32079331 3R 14509986..14510153 17..184 840 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:22:41 has no hits.

BS14251.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:30 Download gff for BS14251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8464-PA 640..1269 17..646 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:38:57 Download gff for BS14251.3prime
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 694..1326 10..646 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:44 Download gff for BS14251.3prime
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 694..1326 10..646 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:44 Download gff for BS14251.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14509983..14510151 10..182 97 <- Plus
3R 14510236..14510699 183..646 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:38:57 Download gff for BS14251.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10335705..10335873 10..182 97 <- Plus
arm_3R 10335958..10336421 183..646 99   Plus

BS14251.5prime Sequence

529 bp (526 high quality bases) assembled on 2006-10-13

> BS14251.5prime
GAAGTTATCAGTCGACATGGCTTTGCGCGGTTCCCACCGCTTGGAAGTGA
TCTTCAAACGCTGCATTGCCTCCCCGGTGTTACACAGTCATGCAGCCAAT
CGGAGGAGCAGTCAACTAGCGATCAAAGAAGGCGATCCAAACAGCAATGG
TAACAGTGGGCAATATCAGCAAAATGGTGAACAAAAAGAAAAAGGCTGGA
GACGATTGGTTCGATTCTTTGTGCCCTTCTCCCTGGGCGCTGTGGTCAGT
GCGGCGATCATCCAGCGGGAAGACTTAACGCCAACGATCGCCGCTTCCAA
AATGACCGGTCGTCGGCGGGACTTCAACTTTATAGCTGATGTGGTGGCAG
GTTGTGCGGATTCGGTGGTCTACATTGAGATTAAGGACACCCGCCACTTT
GACTACTTCAGCGGCCAACCGATTACGGCATCGAATGGTTCCGGCTTCAT
TATTGAGCAGAACGGTCTCATCCTTACCAACGCCCATGTGGTGATCAACA
AACCACACACAATGGTACAGGTGAGGCTA

BS14251.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8464-PA 1269 CG8464-RA 1..513 17..529 2540 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-RB 2512 CG8464-RB 306..819 16..529 2555 99.8 Plus
HtrA2-RA 1415 CG8464-RA 54..567 16..529 2555 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14510894..14511407 529..16 2555 99.8 Minus
Blast to na_te.dros performed on 2015-02-05 02:20:19 has no hits.

BS14251.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:30 Download gff for BS14251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8464-PA 1..512 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:18 Download gff for BS14251.5prime
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 54..566 16..528 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:29 Download gff for BS14251.5prime
Subject Subject Range Query Range Percent Splice Strand
HtrA2-RA 54..566 16..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:29 Download gff for BS14251.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14510895..14511407 16..528 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:18 Download gff for BS14251.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10336617..10337129 16..528 99   Minus

BS14251.pep Sequence

Translation from 16 to 1284

> BS14251.pep
MALRGSHRLEVIFKRCIASPVLHSHAANRRSSQLAIKEGDPNSNGNSGQY
QQNGEQKEKGWRRLVRFFVPFSLGAVVSAAIIQREDLTPTIAASKMTGRR
RDFNFIADVVAGCADSVVYIEIKDTRHFDYFSGQPITASNGSGFIIEQNG
LILTNAHVVINKPHTMVQVRLSDGRTFPATIEDVDQTSDLATLRIQVNNL
SVMRLGKSSTLRSGEWVVALGSPLALSNTVTAGVISSTQRASQELGLRNR
DINYLQTDAAITFGNSGGPLVNLDGEAIGVNSMKVTAGISFAIPIDYVKV
FLERAAEKRKKGSAYKTGYPVKRYMGITMLTLTPDILFELKSRSQNMPSN
LTHGVLVWKVIVGSPAHSGGLQPGDIVTHINKKEIKNSSDVYDALADNSK
TLDIVILRGVKQMHVTITPEDP*

BS14251.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
HtrA2-PB 422 CG8464-PB 1..422 1..422 2140 100 Plus
HtrA2-PA 422 CG8464-PA 1..422 1..422 2140 100 Plus