Clone BS14252 Report

Search the DGRC for BS14252

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCLS-RA
Protein status:BS14252.pep: full length peptide match
Sequenced Size:1001

Clone Sequence Records

BS14252.complete Sequence

1001 bp assembled on 2010-02-09

GenBank Submission: KX801773

> BS14252.complete
GAAGTTATCAGTCGACATGCTGCCCGCCATCATTTTCCGGCAGGTGCAGC
GCCCACTGCACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTCGGC
GGAAGCAGCTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGGATT
CATTCGGATCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGTTAG
CCAGACTTCGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTGCGC
ACCTTGCAGGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAACTT
CCTGGTGGATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGGTGC
GCGAGAAGATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACCATA
CCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATA
TGTTATAGTCCAGGGCGATTTCACCCTGGGCATGAGCCTTCTAGCGTTCG
CCGGCATCACAGATCTGTTGGATGGACAGATCGCACGACGGTGGCCTTCG
CAGGCGAGCAAGTTCGGTTCCTTCCTGGACCCCATGGCTGATAAGTTGCT
GATGGGCTCGCTGGTCATCTCGCTGTGCTACACGGACCTGCTGCCCATGT
GGCTCATGGGCATCGTGGTGTTCCGGGATGTCTTTCTTCTAGGAGCTGGA
TTTGTTATACGCTACATAAGTCTGCCACCGCCGAAAACCTTTTCGCGCTA
CTTCGACGCCACCCATGTTACTGCCCAACTGGAGCCCACGCTGCTCAGCA
AGATCAACACGGGCGTCCAGTTGGCCACCATTGGACTGAGCCTGGGAGCT
CCCATTTGGAACTATTTGGATCACCCAGCTTTGCAGGGACTTTGGTATCT
GACTGGCCTGACTACGGCTGCCACTGCCCTCAGCTACGTCATGAATCGGC
ATAATACCTTTAAGATTATCCAAAAAAAGACGTAGAAGCTTTCTAGACCA
T

BS14252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:49
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-RD 969 CG4774-PD 1..969 17..985 4845 100 Plus
CLS-RC 969 CG4774-PC 1..969 17..985 4845 100 Plus
CLS-RA 969 CG4774-PA 1..969 17..985 4845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:50
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-RD 1289 CG4774-RD 172..1140 17..985 4845 100 Plus
CLS-RC 1373 CG4774-RC 256..1224 17..985 4845 100 Plus
CLS-RA 1337 CG4774-RA 220..1188 17..985 4845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25686315..25686815 517..17 2505 100 Minus
3R 32079331 3R 25685768..25685984 733..517 1085 100 Minus
3R 32079331 3R 25685567..25685703 869..733 685 100 Minus
3R 32079331 3R 25685385..25685501 985..869 585 100 Minus
Blast to na_te.dros performed on 2014-11-28 04:26:47 has no hits.

BS14252.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:19 Download gff for BS14252.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RC 239..1193 17..971 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:26 Download gff for BS14252.complete
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 220..1174 17..971 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:03 Download gff for BS14252.complete
Subject Subject Range Query Range Percent Splice Strand
CG4774-RC 239..1193 17..971 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:59 Download gff for BS14252.complete
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 220..1174 17..971 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:59 Download gff for BS14252.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25685768..25685983 518..733 100 <- Minus
3R 25685399..25685500 870..971 100 <- Minus
3R 25685567..25685702 734..869 100 <- Minus
3R 25686315..25686815 17..517 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:26 Download gff for BS14252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21511121..21511222 870..971 100 <- Minus
arm_3R 21511289..21511424 734..869 100 <- Minus
arm_3R 21511490..21511705 518..733 100 <- Minus
arm_3R 21512037..21512537 17..517 100   Minus

BS14252.3prime Sequence

476 bp (446 high quality bases) assembled on 2006-10-13

> BS14252.3prime
ATGGTCTAGAAAGCTTCTACGTCTTTTTTTGGATAATCTTAAAGGTATTA
TGCCGATTCATGACGTAGCTGAGGGCAGTGGCAGCCGTAGTCAGGCCAGT
CAGATACCAAAGTCCCTGCAAAGCTGGGTGATCCAAATAGTTCCAAATGG
GAGCTCCCAGGCTCAGTCCAATGGTGGCCAACTGGACGCCCGTGTTGATC
TTGCTGAGCAGCGTGGGCTCCAGTTGGGCAGTAACATGGGTGGCGTCGAA
GTAGCGCGAAAAGGTTTTCGGCGGTGGCAGACTTATGTAGCGTATAACAA
ATCCAGCTCCTAGAAGAAAGACATCCCGGAACACCACGATGCCCATGAGC
CACATGGGCAGCAGGTCCGTGTAGCACAGCGAGATGACCAGCGAGCCCAT
CAGCAACTTATCAGCCATGGGGTCCAGGAAGGAACCGAACTTGCTCGCCT
GCGAAGGCCACCGTCGTGCGATCTGT

BS14252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:55:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG4774-PB 969 CG4774-RB 510..969 476..17 2300 100 Minus
CG4774-PA 969 CG4774-RA 510..969 476..17 2300 100 Minus
CG4774-PC 969 CG4774-RC 510..969 476..17 2300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-RD 1289 CG4774-RD 681..1140 476..17 2300 100 Minus
CLS-RC 1373 CG4774-RC 765..1224 476..17 2300 100 Minus
CLS-RA 1337 CG4774-RA 729..1188 476..17 2300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25685768..25685975 269..476 1040 100 Plus
3R 32079331 3R 25685567..25685703 133..269 685 100 Plus
3R 32079331 3R 25685385..25685501 17..133 585 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:54:24 has no hits.

BS14252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:30 Download gff for BS14252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4774-PC 510..969 17..476 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:12 Download gff for BS14252.3prime
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 729..1191 13..476 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:02 Download gff for BS14252.3prime
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 729..1191 13..476 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:02 Download gff for BS14252.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25685382..25685500 13..132 98 <- Plus
3R 25685567..25685702 133..268 100 <- Plus
3R 25685768..25685975 269..476 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:12 Download gff for BS14252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21511104..21511222 13..132 98 <- Plus
arm_3R 21511289..21511424 133..268 100 <- Plus
arm_3R 21511490..21511697 269..476 100   Plus

BS14252.5prime Sequence

472 bp (470 high quality bases) assembled on 2006-10-13

> BS14252.5prime
GAAGTTATCAGTCGACATGCTGCCCGCCATCATTTTCCGGCAGGTGCAGC
GCCCACTGCACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTCGGC
GGAAGCAGCTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGGATT
CATTCGGATCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGTTAG
CCAGACTTCGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTGCGC
ACCTTGCAGGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAACTT
CCTGGTGGATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGGTGC
GCGAGAAGATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACCATA
CCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATA
TGTTATAGTCCAGGGCGATTTC

BS14252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4774-PB 969 CG4774-RB 1..456 17..472 2280 100 Plus
CG4774-PA 969 CG4774-RA 1..456 17..472 2280 100 Plus
CG4774-PC 969 CG4774-RC 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-RD 1289 CG4774-RD 172..627 17..472 2280 100 Plus
CLS-RC 1373 CG4774-RC 256..711 17..472 2280 100 Plus
CLS-RA 1337 CG4774-RA 220..675 17..472 2280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25686360..25686815 472..17 2280 100 Minus
Blast to na_te.dros performed on 2015-02-11 22:22:24 has no hits.

BS14252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:31 Download gff for BS14252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4774-PC 1..456 17..472 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:39:57 Download gff for BS14252.5prime
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 220..675 17..472 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:14 Download gff for BS14252.5prime
Subject Subject Range Query Range Percent Splice Strand
CLS-RA 220..675 17..472 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:14 Download gff for BS14252.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25686360..25686815 17..472 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:39:57 Download gff for BS14252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21512082..21512537 17..472 100   Minus

BS14252.pep Sequence

Translation from 16 to 984

> BS14252.pep
MLPAIIFRQVQRPLHHGAATLEHVLGVGGSSFVNCLNRYAAATGFIRISF
LDIKRRRNYELARLRLYADEKKQSLHLRTLQGRHLLQGVIERKNFLVDDI
REARHKVQERVREKIDEIREERENIMTIPNMLTISRAVLSPYIGYVIVQG
DFTLGMSLLAFAGITDLLDGQIARRWPSQASKFGSFLDPMADKLLMGSLV
ISLCYTDLLPMWLMGIVVFRDVFLLGAGFVIRYISLPPPKTFSRYFDATH
VTAQLEPTLLSKINTGVQLATIGLSLGAPIWNYLDHPALQGLWYLTGLTT
AATALSYVMNRHNTFKIIQKKT*

BS14252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CLS-PD 322 CG4774-PD 1..322 1..322 1648 100 Plus
CLS-PC 322 CG4774-PC 1..322 1..322 1648 100 Plus
CLS-PA 322 CG4774-PA 1..322 1..322 1648 100 Plus
CLS-PB 322 CG4774-PB 1..322 1..322 1648 100 Plus