Clone Sequence Records
BS14252.complete Sequence
1001 bp assembled on 2010-02-09
GenBank Submission: KX801773
> BS14252.complete
GAAGTTATCAGTCGACATGCTGCCCGCCATCATTTTCCGGCAGGTGCAGC
GCCCACTGCACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTCGGC
GGAAGCAGCTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGGATT
CATTCGGATCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGTTAG
CCAGACTTCGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTGCGC
ACCTTGCAGGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAACTT
CCTGGTGGATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGGTGC
GCGAGAAGATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACCATA
CCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATA
TGTTATAGTCCAGGGCGATTTCACCCTGGGCATGAGCCTTCTAGCGTTCG
CCGGCATCACAGATCTGTTGGATGGACAGATCGCACGACGGTGGCCTTCG
CAGGCGAGCAAGTTCGGTTCCTTCCTGGACCCCATGGCTGATAAGTTGCT
GATGGGCTCGCTGGTCATCTCGCTGTGCTACACGGACCTGCTGCCCATGT
GGCTCATGGGCATCGTGGTGTTCCGGGATGTCTTTCTTCTAGGAGCTGGA
TTTGTTATACGCTACATAAGTCTGCCACCGCCGAAAACCTTTTCGCGCTA
CTTCGACGCCACCCATGTTACTGCCCAACTGGAGCCCACGCTGCTCAGCA
AGATCAACACGGGCGTCCAGTTGGCCACCATTGGACTGAGCCTGGGAGCT
CCCATTTGGAACTATTTGGATCACCCAGCTTTGCAGGGACTTTGGTATCT
GACTGGCCTGACTACGGCTGCCACTGCCCTCAGCTACGTCATGAATCGGC
ATAATACCTTTAAGATTATCCAAAAAAAGACGTAGAAGCTTTCTAGACCA
T
BS14252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CLS-RD | 969 | CG4774-PD | 1..969 | 17..985 | 4845 | 100 | Plus |
CLS-RC | 969 | CG4774-PC | 1..969 | 17..985 | 4845 | 100 | Plus |
CLS-RA | 969 | CG4774-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CLS-RD | 1289 | CG4774-RD | 172..1140 | 17..985 | 4845 | 100 | Plus |
CLS-RC | 1373 | CG4774-RC | 256..1224 | 17..985 | 4845 | 100 | Plus |
CLS-RA | 1337 | CG4774-RA | 220..1188 | 17..985 | 4845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25686315..25686815 | 517..17 | 2505 | 100 | Minus |
3R | 32079331 | 3R | 25685768..25685984 | 733..517 | 1085 | 100 | Minus |
3R | 32079331 | 3R | 25685567..25685703 | 869..733 | 685 | 100 | Minus |
3R | 32079331 | 3R | 25685385..25685501 | 985..869 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:26:47 has no hits.
BS14252.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:19 Download gff for
BS14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4774-RC | 239..1193 | 17..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:26 Download gff for
BS14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 220..1174 | 17..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:03 Download gff for
BS14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4774-RC | 239..1193 | 17..971 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:59 Download gff for
BS14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 220..1174 | 17..971 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:59 Download gff for
BS14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25685768..25685983 | 518..733 | 100 | <- | Minus |
3R | 25685399..25685500 | 870..971 | 100 | <- | Minus |
3R | 25685567..25685702 | 734..869 | 100 | <- | Minus |
3R | 25686315..25686815 | 17..517 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:26 Download gff for
BS14252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21511121..21511222 | 870..971 | 100 | <- | Minus |
arm_3R | 21511289..21511424 | 734..869 | 100 | <- | Minus |
arm_3R | 21511490..21511705 | 518..733 | 100 | <- | Minus |
arm_3R | 21512037..21512537 | 17..517 | 100 | | Minus |
BS14252.3prime Sequence
476 bp (446 high quality bases) assembled on 2006-10-13
> BS14252.3prime
ATGGTCTAGAAAGCTTCTACGTCTTTTTTTGGATAATCTTAAAGGTATTA
TGCCGATTCATGACGTAGCTGAGGGCAGTGGCAGCCGTAGTCAGGCCAGT
CAGATACCAAAGTCCCTGCAAAGCTGGGTGATCCAAATAGTTCCAAATGG
GAGCTCCCAGGCTCAGTCCAATGGTGGCCAACTGGACGCCCGTGTTGATC
TTGCTGAGCAGCGTGGGCTCCAGTTGGGCAGTAACATGGGTGGCGTCGAA
GTAGCGCGAAAAGGTTTTCGGCGGTGGCAGACTTATGTAGCGTATAACAA
ATCCAGCTCCTAGAAGAAAGACATCCCGGAACACCACGATGCCCATGAGC
CACATGGGCAGCAGGTCCGTGTAGCACAGCGAGATGACCAGCGAGCCCAT
CAGCAACTTATCAGCCATGGGGTCCAGGAAGGAACCGAACTTGCTCGCCT
GCGAAGGCCACCGTCGTGCGATCTGT
BS14252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:55:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4774-PB | 969 | CG4774-RB | 510..969 | 476..17 | 2300 | 100 | Minus |
CG4774-PA | 969 | CG4774-RA | 510..969 | 476..17 | 2300 | 100 | Minus |
CG4774-PC | 969 | CG4774-RC | 510..969 | 476..17 | 2300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:54:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CLS-RD | 1289 | CG4774-RD | 681..1140 | 476..17 | 2300 | 100 | Minus |
CLS-RC | 1373 | CG4774-RC | 765..1224 | 476..17 | 2300 | 100 | Minus |
CLS-RA | 1337 | CG4774-RA | 729..1188 | 476..17 | 2300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:54:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25685768..25685975 | 269..476 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 25685567..25685703 | 133..269 | 685 | 100 | Plus |
3R | 32079331 | 3R | 25685385..25685501 | 17..133 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:54:24 has no hits.
BS14252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:30 Download gff for
BS14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4774-PC | 510..969 | 17..476 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:12 Download gff for
BS14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 729..1191 | 13..476 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:52:02 Download gff for
BS14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 729..1191 | 13..476 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:52:02 Download gff for
BS14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25685382..25685500 | 13..132 | 98 | <- | Plus |
3R | 25685567..25685702 | 133..268 | 100 | <- | Plus |
3R | 25685768..25685975 | 269..476 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:12 Download gff for
BS14252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21511104..21511222 | 13..132 | 98 | <- | Plus |
arm_3R | 21511289..21511424 | 133..268 | 100 | <- | Plus |
arm_3R | 21511490..21511697 | 269..476 | 100 | | Plus |
BS14252.5prime Sequence
472 bp (470 high quality bases) assembled on 2006-10-13
> BS14252.5prime
GAAGTTATCAGTCGACATGCTGCCCGCCATCATTTTCCGGCAGGTGCAGC
GCCCACTGCACCATGGAGCCGCCACATTGGAGCACGTTTTGGGAGTCGGC
GGAAGCAGCTTCGTGAACTGCCTGAATCGCTATGCGGCCGCCACGGGATT
CATTCGGATCTCGTTTCTGGACATTAAGCGGCGCAGGAACTACGAGTTAG
CCAGACTTCGCCTCTATGCCGATGAGAAGAAGCAGTCGCTCCATTTGCGC
ACCTTGCAGGGACGCCATCTCCTGCAGGGTGTCATCGAAAGGAAGAACTT
CCTGGTGGATGACATCCGGGAGGCCAGGCACAAAGTCCAGGAGCGGGTGC
GCGAGAAGATCGACGAGATACGCGAAGAGCGAGAGAACATTATGACCATA
CCCAACATGCTGACCATCAGTCGTGCCGTCCTCTCACCCTACATCGGATA
TGTTATAGTCCAGGGCGATTTC
BS14252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4774-PB | 969 | CG4774-RB | 1..456 | 17..472 | 2280 | 100 | Plus |
CG4774-PA | 969 | CG4774-RA | 1..456 | 17..472 | 2280 | 100 | Plus |
CG4774-PC | 969 | CG4774-RC | 1..456 | 17..472 | 2280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CLS-RD | 1289 | CG4774-RD | 172..627 | 17..472 | 2280 | 100 | Plus |
CLS-RC | 1373 | CG4774-RC | 256..711 | 17..472 | 2280 | 100 | Plus |
CLS-RA | 1337 | CG4774-RA | 220..675 | 17..472 | 2280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25686360..25686815 | 472..17 | 2280 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:22:24 has no hits.
BS14252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:31 Download gff for
BS14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4774-PC | 1..456 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:39:57 Download gff for
BS14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 220..675 | 17..472 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:14 Download gff for
BS14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CLS-RA | 220..675 | 17..472 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:14 Download gff for
BS14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25686360..25686815 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:39:57 Download gff for
BS14252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21512082..21512537 | 17..472 | 100 | | Minus |
BS14252.pep Sequence
Translation from 16 to 984
> BS14252.pep
MLPAIIFRQVQRPLHHGAATLEHVLGVGGSSFVNCLNRYAAATGFIRISF
LDIKRRRNYELARLRLYADEKKQSLHLRTLQGRHLLQGVIERKNFLVDDI
REARHKVQERVREKIDEIREERENIMTIPNMLTISRAVLSPYIGYVIVQG
DFTLGMSLLAFAGITDLLDGQIARRWPSQASKFGSFLDPMADKLLMGSLV
ISLCYTDLLPMWLMGIVVFRDVFLLGAGFVIRYISLPPPKTFSRYFDATH
VTAQLEPTLLSKINTGVQLATIGLSLGAPIWNYLDHPALQGLWYLTGLTT
AATALSYVMNRHNTFKIIQKKT*
BS14252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CLS-PD | 322 | CG4774-PD | 1..322 | 1..322 | 1648 | 100 | Plus |
CLS-PC | 322 | CG4774-PC | 1..322 | 1..322 | 1648 | 100 | Plus |
CLS-PA | 322 | CG4774-PA | 1..322 | 1..322 | 1648 | 100 | Plus |
CLS-PB | 322 | CG4774-PB | 1..322 | 1..322 | 1648 | 100 | Plus |