Clone BS14254 Report

Search the DGRC for BS14254

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:54
Vector:pDNR-Dual
Associated Gene/Transcriptmil-RA
Protein status:BS14254.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14254.3prime Sequence

574 bp (570 high quality bases) assembled on 2006-10-13

> BS14254.3prime
ATGGTCTAGAAAGCTTTTACTTGTCGACGCCATCCTCCTCTTCGGCATCC
GACTCGTCCTCGGTATCTTCCGACTCGGTCTCCGATCCGCTGGAGCTCTG
ACAATCGGCAATCTCGCCGGTGAAGAAGATCACCGCCTTGGGAATCACGC
GCTCCTTTAGATAGAAGCCCACCTCAAAATCGTTTTGCAGCATAGCATTG
ACGTCACAGTAGTTGGGGTCAAGGGTATCTTCTGGCAAAAGCGGCGGCGA
GAAGAACTCAAAGAACGACGGCTCTTGATTTTCGGTTTTGGTCTGGTCCT
TGGTCTGCTTCCAGTCGATGACGCAGCCTTCGCACTTGTAGATCTCGGCG
CCATCATATGCGAGCGGATCGTCTGGATCCGGCAGGCAGTTGAGGAAATA
TGTCTTGGTCAGCACCGTGTTGGTAAAGTAATCATTGGGATCGAAGTGGA
ATTCGATATCAAACTTCACCACGGGTTCGTTGTACAGCCGAGAACGGATG
TCGCTTAAGCACTCTAATATTTTCTCATCCCTCTTGCTGATGAACTCGGT
GTACGATGCTTTGAGAACCCTCAG

BS14254.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5017-PA 852 CG5017-RA 295..852 574..17 2790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
mil-RA 1097 CG5017-RA 416..974 574..16 2795 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27913052..27913282 513..283 1155 100 Minus
3R 32079331 3R 27913482..27913662 196..16 905 100 Minus
3R 32079331 3R 27913341..27913428 283..196 440 100 Minus
3R 32079331 3R 27912927..27912989 574..512 315 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:50:49 has no hits.

BS14254.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:32 Download gff for BS14254.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5017-PA 295..852 17..574 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:04 Download gff for BS14254.3prime
Subject Subject Range Query Range Percent Splice Strand
hanabi-RA 416..981 7..574 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:12 Download gff for BS14254.3prime
Subject Subject Range Query Range Percent Splice Strand
mil-RA 416..981 7..574 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:12 Download gff for BS14254.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27912927..27912989 512..574 100 -> Minus
3R 27913054..27913282 283..511 100 -> Minus
3R 27913342..27913427 197..282 100 -> Minus
3R 27913482..27913669 7..196 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:04 Download gff for BS14254.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23738649..23738711 512..574 100 -> Minus
arm_3R 23738776..23739004 283..511 100 -> Minus
arm_3R 23739064..23739149 197..282 100 -> Minus
arm_3R 23739204..23739391 7..196 97   Minus

BS14254.5prime Sequence

462 bp (431 high quality bases) assembled on 2006-10-13

> BS14254.5prime
GAAGTTATCAGTCGACATGGAAACTGTGCGAAATCGAAACCCTCCGCGGA
TGAAGTACACCGCTCCACCGAAGATGGAATCGGATTTAAACTTCACCGAG
AAGGAGAAGAAAACTCTTACCGAACTGAAGCAGCTCTATTTGGAGACCAT
TAACCTGGATGTGGCTCTGCAGCGCGACATTTACAATATCGAGAAGAAGT
ACGAGGATAAGCACAATATCATATTTGATAAGCGCAAGAAGATTCTAGAT
GAGTTTAGAAAGCAAAACCACGGTGACGTGGAAACCAATCAGAGCGTGCC
CAACTTTTGGCTGAGGGTTCTCAAAGCATCGTACACCGAGTTCATCAGCA
AGAGGGATGAGAAAATATTAGAGTGCTTAAGCGACATCCGTTCTTCGGCT
GTACAACGAACCCGTGGTGAAGTTTGATATCGAATTCCACTTCGATCCCA
ATGAATACTTTA

BS14254.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5017-PA 852 CG5017-RA 1..378 17..394 1865 99.7 Plus
CG5017-PA 852 CG5017-RA 378..445 395..462 315 98.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
mil-RA 1097 CG5017-RA 122..566 17..462 2175 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27912568..27912800 17..249 1165 100 Plus
3R 32079331 3R 27912866..27912989 250..373 605 99.2 Plus
3R 32079331 3R 27913052..27913141 372..462 390 97.8 Plus
Blast to na_te.dros performed on 2015-01-30 17:38:57 has no hits.

BS14254.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:32 Download gff for BS14254.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5017-PA 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:35 Download gff for BS14254.5prime
Subject Subject Range Query Range Percent Splice Strand
hanabi-RA 117..565 9..461 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:50 Download gff for BS14254.5prime
Subject Subject Range Query Range Percent Splice Strand
mil-RA 117..565 9..461 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:50 Download gff for BS14254.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27912563..27912800 9..249 98 -> Plus
3R 27912866..27912989 250..373 99 -> Plus
3R 27913054..27913140 374..461 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:35 Download gff for BS14254.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23738285..23738522 9..249 98 -> Plus
arm_3R 23738588..23738711 250..373 99 -> Plus
arm_3R 23738776..23738862 374..461 97   Plus

BS14254.complete Sequence

884 bp assembled on 2006-11-01

> BS14254.complete
GAAGTTATCAGTCGACATGGAAACTGTGCGAAATCGAAACCCTCCGCGGA
TGAAGTACACCGCTCCACCGAAGATGGAATCGGATTTAAACTTCACCGAG
AAGGAGAAGAAAACTCTTACCGAACTGAAGCAGCTCTATTTGGAGACCAT
TAACCTGGATGTGGCTCTGCAGCGCGACATTTACAATATCGAGAAGAAGT
ACGAGGATAAGCACAATATCATATTTGATAAGCGCAAGAAGATTCTAGAT
GAGTTTAGAAAGCAAAACCACGGTGACGTGGAAACCAATCAGAGCGTGCC
CAACTTTTGGCTGAGGGTTCTCAAAGCATCGTACACCGAGTTCATCAGCA
AGAGGGATGAGAAAATATTAGAGTGCTTAAGCGACATCCGTTCTCGGCTG
TACAACGAACCCGTGGTGAAGTTTGATATCGAATTCCACTTCGATCCCAA
TGATTACTTTACCAACACGGTGCTGACCAAGACATATTTCCTCAACTGCC
TGCCGGATCCAGACGATCCGCTCGCATATGATGGCGCCGAGATCTACAAG
TGCGAAGGCTGCGTCATCGACTGGAAGCAGACCAAGGACCAGACCAAAAC
CGAAAATCAAGAGCCGTCGTTCTTTGAGTTCTTCTCGCCGCCGCTTTTGC
CAGAAGATACCCTTGACCCCAACTACTGTGACGTCAATGCTATGCTGCAA
AACGATTTTGAGGTGGGCTTCTATCTAAAGGAGCGCGTGATTCCCAAGGC
GGTGATCTTCTTCACCGGCGAGATTGCCGATTGTCAGAGCTCCAGCGGAT
CGGAGACCGAGTCGGAAGATACCGAGGACGAGTCGGATGCCGAAGAGGAG
GATGGCGTCGACAAGTAAAAGCTTTCTAGACCAT

BS14254.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
mil-RA 852 CG5017-PA 1..852 17..868 4245 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
mil-RA 1097 CG5017-RA 122..974 17..869 4250 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27912568..27912800 17..249 1165 100 Plus
3R 32079331 3R 27913052..27913282 372..602 1155 100 Plus
3R 32079331 3R 27913482..27913662 689..869 905 100 Plus
3R 32079331 3R 27912866..27912989 250..373 605 99.2 Plus
3R 32079331 3R 27913341..27913428 602..689 440 100 Plus
Blast to na_te.dros performed on 2014-11-27 02:08:15 has no hits.

BS14254.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:33 Download gff for BS14254.complete
Subject Subject Range Query Range Percent Splice Strand
CG5017-RA 1..852 17..868 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:46 Download gff for BS14254.complete
Subject Subject Range Query Range Percent Splice Strand
CG5017-RA 117..981 9..878 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:18 Download gff for BS14254.complete
Subject Subject Range Query Range Percent Splice Strand
hanabi-RA 122..971 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:33 Download gff for BS14254.complete
Subject Subject Range Query Range Percent Splice Strand
CG5017-RA 117..981 9..878 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:09 Download gff for BS14254.complete
Subject Subject Range Query Range Percent Splice Strand
mil-RA 122..971 17..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:09 Download gff for BS14254.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27913054..27913282 374..602 100 -> Plus
3R 27913342..27913427 603..688 100 -> Plus
3R 27913482..27913659 689..866 100   Plus
3R 27912568..27912800 17..249 100 -> Plus
3R 27912866..27912989 250..373 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:18 Download gff for BS14254.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23738290..23738522 17..249 100 -> Plus
arm_3R 23738588..23738711 250..373 99 -> Plus
arm_3R 23738776..23739004 374..602 100 -> Plus
arm_3R 23739064..23739149 603..688 100 -> Plus
arm_3R 23739204..23739381 689..866 100   Plus

BS14254.pep Sequence

Translation from 16 to 867

> BS14254.pep
METVRNRNPPRMKYTAPPKMESDLNFTEKEKKTLTELKQLYLETINLDVA
LQRDIYNIEKKYEDKHNIIFDKRKKILDEFRKQNHGDVETNQSVPNFWLR
VLKASYTEFISKRDEKILECLSDIRSRLYNEPVVKFDIEFHFDPNDYFTN
TVLTKTYFLNCLPDPDDPLAYDGAEIYKCEGCVIDWKQTKDQTKTENQEP
SFFEFFSPPLLPEDTLDPNYCDVNAMLQNDFEVGFYLKERVIPKAVIFFT
GEIADCQSSSGSETESEDTEDESDAEEEDGVDK*

BS14254.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:17
Subject Length Description Subject Range Query Range Score Percent Strand
mil-PA 283 CG5017-PA 1..283 1..283 1512 100 Plus
Nap1-PC 370 CG5330-PC 60..347 37..277 425 33.7 Plus
Nap1-PB 370 CG5330-PB 60..347 37..277 425 33.7 Plus
Nap1-PA 370 CG5330-PA 60..347 37..277 425 33.7 Plus
CG3708-PB 362 CG3708-PB 67..359 28..274 302 27.3 Plus