Clone Sequence Records
BS14254.3prime Sequence
574 bp (570 high quality bases) assembled on 2006-10-13
> BS14254.3prime
ATGGTCTAGAAAGCTTTTACTTGTCGACGCCATCCTCCTCTTCGGCATCC
GACTCGTCCTCGGTATCTTCCGACTCGGTCTCCGATCCGCTGGAGCTCTG
ACAATCGGCAATCTCGCCGGTGAAGAAGATCACCGCCTTGGGAATCACGC
GCTCCTTTAGATAGAAGCCCACCTCAAAATCGTTTTGCAGCATAGCATTG
ACGTCACAGTAGTTGGGGTCAAGGGTATCTTCTGGCAAAAGCGGCGGCGA
GAAGAACTCAAAGAACGACGGCTCTTGATTTTCGGTTTTGGTCTGGTCCT
TGGTCTGCTTCCAGTCGATGACGCAGCCTTCGCACTTGTAGATCTCGGCG
CCATCATATGCGAGCGGATCGTCTGGATCCGGCAGGCAGTTGAGGAAATA
TGTCTTGGTCAGCACCGTGTTGGTAAAGTAATCATTGGGATCGAAGTGGA
ATTCGATATCAAACTTCACCACGGGTTCGTTGTACAGCCGAGAACGGATG
TCGCTTAAGCACTCTAATATTTTCTCATCCCTCTTGCTGATGAACTCGGT
GTACGATGCTTTGAGAACCCTCAG
BS14254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5017-PA | 852 | CG5017-RA | 295..852 | 574..17 | 2790 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mil-RA | 1097 | CG5017-RA | 416..974 | 574..16 | 2795 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27913052..27913282 | 513..283 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 27913482..27913662 | 196..16 | 905 | 100 | Minus |
3R | 32079331 | 3R | 27913341..27913428 | 283..196 | 440 | 100 | Minus |
3R | 32079331 | 3R | 27912927..27912989 | 574..512 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:50:49 has no hits.
BS14254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:32 Download gff for
BS14254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5017-PA | 295..852 | 17..574 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:04 Download gff for
BS14254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hanabi-RA | 416..981 | 7..574 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:12 Download gff for
BS14254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mil-RA | 416..981 | 7..574 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:12 Download gff for
BS14254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27912927..27912989 | 512..574 | 100 | -> | Minus |
3R | 27913054..27913282 | 283..511 | 100 | -> | Minus |
3R | 27913342..27913427 | 197..282 | 100 | -> | Minus |
3R | 27913482..27913669 | 7..196 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:04 Download gff for
BS14254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23738649..23738711 | 512..574 | 100 | -> | Minus |
arm_3R | 23738776..23739004 | 283..511 | 100 | -> | Minus |
arm_3R | 23739064..23739149 | 197..282 | 100 | -> | Minus |
arm_3R | 23739204..23739391 | 7..196 | 97 | | Minus |
BS14254.5prime Sequence
462 bp (431 high quality bases) assembled on 2006-10-13
> BS14254.5prime
GAAGTTATCAGTCGACATGGAAACTGTGCGAAATCGAAACCCTCCGCGGA
TGAAGTACACCGCTCCACCGAAGATGGAATCGGATTTAAACTTCACCGAG
AAGGAGAAGAAAACTCTTACCGAACTGAAGCAGCTCTATTTGGAGACCAT
TAACCTGGATGTGGCTCTGCAGCGCGACATTTACAATATCGAGAAGAAGT
ACGAGGATAAGCACAATATCATATTTGATAAGCGCAAGAAGATTCTAGAT
GAGTTTAGAAAGCAAAACCACGGTGACGTGGAAACCAATCAGAGCGTGCC
CAACTTTTGGCTGAGGGTTCTCAAAGCATCGTACACCGAGTTCATCAGCA
AGAGGGATGAGAAAATATTAGAGTGCTTAAGCGACATCCGTTCTTCGGCT
GTACAACGAACCCGTGGTGAAGTTTGATATCGAATTCCACTTCGATCCCA
ATGAATACTTTA
BS14254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5017-PA | 852 | CG5017-RA | 1..378 | 17..394 | 1865 | 99.7 | Plus |
CG5017-PA | 852 | CG5017-RA | 378..445 | 395..462 | 315 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mil-RA | 1097 | CG5017-RA | 122..566 | 17..462 | 2175 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27912568..27912800 | 17..249 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 27912866..27912989 | 250..373 | 605 | 99.2 | Plus |
3R | 32079331 | 3R | 27913052..27913141 | 372..462 | 390 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:38:57 has no hits.
BS14254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:32 Download gff for
BS14254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5017-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:35 Download gff for
BS14254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hanabi-RA | 117..565 | 9..461 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:50 Download gff for
BS14254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mil-RA | 117..565 | 9..461 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:50 Download gff for
BS14254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27912563..27912800 | 9..249 | 98 | -> | Plus |
3R | 27912866..27912989 | 250..373 | 99 | -> | Plus |
3R | 27913054..27913140 | 374..461 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:35 Download gff for
BS14254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23738285..23738522 | 9..249 | 98 | -> | Plus |
arm_3R | 23738588..23738711 | 250..373 | 99 | -> | Plus |
arm_3R | 23738776..23738862 | 374..461 | 97 | | Plus |
BS14254.complete Sequence
884 bp assembled on 2006-11-01
> BS14254.complete
GAAGTTATCAGTCGACATGGAAACTGTGCGAAATCGAAACCCTCCGCGGA
TGAAGTACACCGCTCCACCGAAGATGGAATCGGATTTAAACTTCACCGAG
AAGGAGAAGAAAACTCTTACCGAACTGAAGCAGCTCTATTTGGAGACCAT
TAACCTGGATGTGGCTCTGCAGCGCGACATTTACAATATCGAGAAGAAGT
ACGAGGATAAGCACAATATCATATTTGATAAGCGCAAGAAGATTCTAGAT
GAGTTTAGAAAGCAAAACCACGGTGACGTGGAAACCAATCAGAGCGTGCC
CAACTTTTGGCTGAGGGTTCTCAAAGCATCGTACACCGAGTTCATCAGCA
AGAGGGATGAGAAAATATTAGAGTGCTTAAGCGACATCCGTTCTCGGCTG
TACAACGAACCCGTGGTGAAGTTTGATATCGAATTCCACTTCGATCCCAA
TGATTACTTTACCAACACGGTGCTGACCAAGACATATTTCCTCAACTGCC
TGCCGGATCCAGACGATCCGCTCGCATATGATGGCGCCGAGATCTACAAG
TGCGAAGGCTGCGTCATCGACTGGAAGCAGACCAAGGACCAGACCAAAAC
CGAAAATCAAGAGCCGTCGTTCTTTGAGTTCTTCTCGCCGCCGCTTTTGC
CAGAAGATACCCTTGACCCCAACTACTGTGACGTCAATGCTATGCTGCAA
AACGATTTTGAGGTGGGCTTCTATCTAAAGGAGCGCGTGATTCCCAAGGC
GGTGATCTTCTTCACCGGCGAGATTGCCGATTGTCAGAGCTCCAGCGGAT
CGGAGACCGAGTCGGAAGATACCGAGGACGAGTCGGATGCCGAAGAGGAG
GATGGCGTCGACAAGTAAAAGCTTTCTAGACCAT
BS14254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mil-RA | 852 | CG5017-PA | 1..852 | 17..868 | 4245 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mil-RA | 1097 | CG5017-RA | 122..974 | 17..869 | 4250 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27912568..27912800 | 17..249 | 1165 | 100 | Plus |
3R | 32079331 | 3R | 27913052..27913282 | 372..602 | 1155 | 100 | Plus |
3R | 32079331 | 3R | 27913482..27913662 | 689..869 | 905 | 100 | Plus |
3R | 32079331 | 3R | 27912866..27912989 | 250..373 | 605 | 99.2 | Plus |
3R | 32079331 | 3R | 27913341..27913428 | 602..689 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 02:08:15 has no hits.
BS14254.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:33 Download gff for
BS14254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5017-RA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:46 Download gff for
BS14254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5017-RA | 117..981 | 9..878 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:18 Download gff for
BS14254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hanabi-RA | 122..971 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:33 Download gff for
BS14254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5017-RA | 117..981 | 9..878 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:38:09 Download gff for
BS14254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mil-RA | 122..971 | 17..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:38:09 Download gff for
BS14254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27913054..27913282 | 374..602 | 100 | -> | Plus |
3R | 27913342..27913427 | 603..688 | 100 | -> | Plus |
3R | 27913482..27913659 | 689..866 | 100 | | Plus |
3R | 27912568..27912800 | 17..249 | 100 | -> | Plus |
3R | 27912866..27912989 | 250..373 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:18 Download gff for
BS14254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23738290..23738522 | 17..249 | 100 | -> | Plus |
arm_3R | 23738588..23738711 | 250..373 | 99 | -> | Plus |
arm_3R | 23738776..23739004 | 374..602 | 100 | -> | Plus |
arm_3R | 23739064..23739149 | 603..688 | 100 | -> | Plus |
arm_3R | 23739204..23739381 | 689..866 | 100 | | Plus |
BS14254.pep Sequence
Translation from 16 to 867
> BS14254.pep
METVRNRNPPRMKYTAPPKMESDLNFTEKEKKTLTELKQLYLETINLDVA
LQRDIYNIEKKYEDKHNIIFDKRKKILDEFRKQNHGDVETNQSVPNFWLR
VLKASYTEFISKRDEKILECLSDIRSRLYNEPVVKFDIEFHFDPNDYFTN
TVLTKTYFLNCLPDPDDPLAYDGAEIYKCEGCVIDWKQTKDQTKTENQEP
SFFEFFSPPLLPEDTLDPNYCDVNAMLQNDFEVGFYLKERVIPKAVIFFT
GEIADCQSSSGSETESEDTEDESDAEEEDGVDK*
BS14254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mil-PA | 283 | CG5017-PA | 1..283 | 1..283 | 1512 | 100 | Plus |
Nap1-PC | 370 | CG5330-PC | 60..347 | 37..277 | 425 | 33.7 | Plus |
Nap1-PB | 370 | CG5330-PB | 60..347 | 37..277 | 425 | 33.7 | Plus |
Nap1-PA | 370 | CG5330-PA | 60..347 | 37..277 | 425 | 33.7 | Plus |
CG3708-PB | 362 | CG3708-PB | 67..359 | 28..274 | 302 | 27.3 | Plus |