Clone Sequence Records
BS14255.complete Sequence
1346 bp assembled on 2009-12-07
GenBank Submission: KX804876
> BS14255.complete
GAAGTTATCAGTCGACATGACCAGTTTCCGCAAGCGCACCGTGCAGAAGC
CAATCCGCGGCACCCGCACCTCGCCGCACACGGCGCAGGTGATCACCTCC
AGCGGAAATCCGTACTTGGACGTGGTCATTGGCGGCGGTCTGCCCATGGG
TTCGATCTGCCTGATCGAGGAGGATCGCTTCATGACGCACGCCAAGGTGC
TGGCCAAGTACTTTCTGGCCGAGGGTGTGATTTCCAAGCAGGAGATATTT
CTGGGCAGCCTGGACGACATTCCAGCCGAGATGCTGCGCCGTCTGCCCAG
ACCGCTGACCGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGCGCTGG
GAGATGCTGGCGCCGAAAATGGCCTAAGGATCGCCTGGCGATACAATGAT
CTGCCGCTGGTGAATTCGGAACATGCCACAGCAAAAATCGGACACCATTT
CAATCTGATGGAACAGATGGACTCCATGATGCTCTACAATGTCAAGACTA
CCTTGTGGGACGATAGCCCCAAGCATCTGGACATCGTCATTGACGAGGAG
TTCTCCAAGAGCAGCTCCCCAACCACTCCGTCGCTGGAGCAGCAGCCCGT
GGAGGATGCCCCACCGATTCCGGGCACGGAGACCGCTCCGCAGGAGAAGA
TGCCAGCCCAGGAGGAGGAGAACTCTGCCAACAACAATAATAACAACAAT
AACAATAGCAGCAGCGTGACCAGTAGCACAAAAACAGGCAGCCAGGATTC
GCCGTTGCAGGTGTTCCACAACCCTCGGTACAAAGGACTGCTCAACGATA
TTCAACAGCTGCTGCGTAACGAGAGCTTCGTCGCTGGGACCAAGAATAAC
CTGTGCCGCGTCTGCCTGACCTCGTTGGGATCGCCGCTGTGGTACGACGA
ACACTTCGGCGAGGATCTGATCAAGTTTCTCACACTGCTGATGGCCAGTG
TGCGGAACTGCAACTCCGTGTGCCTGATCACGATGCCCATGCACCTGATT
GCCAAGTACGATGCCAGCCTAGTGCCCAAGATCCGCCAACTGGTGGACTA
TGCCATCGAACTGGAGTCGTTTGCCGGTTCGGAGCGTGAAACGCACCCAG
CCTTCAAGGAGTACAGTGGCCTGCTCCATTTGCACAAGATGTCGGCCATC
AATACGCTGGCCGTGCACATGCCGGAAACCCCGGACTTGGCCTTCAAGTT
GCGCCGCAAGAAGTTCATCATCGAAAAGTTCCATCTGCCCCCGGAGCTGC
AGGAGTCATCTGCCAAGCCGGACAATTGCATCTCTGGTCTACTGAGCAAT
TCCAATGCCACAGCCTCGCTGGATTTCTAGAAGCTTTCTAGACCAT
BS14255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-RB | 1314 | CG6907-PB | 1..1314 | 17..1330 | 6555 | 99.9 | Plus |
CG6907-RA | 1314 | CG6907-PA | 1..1314 | 17..1330 | 6555 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-RB | 1512 | CG6907-RB | 113..1426 | 17..1330 | 6555 | 99.9 | Plus |
CG6907-RA | 1671 | CG6907-RA | 272..1585 | 17..1330 | 6555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5524410..5525723 | 17..1330 | 6555 | 99.9 | Plus |
Blast to na_te.dros performed 2014-11-28 01:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5648..5713 | 678..742 | 129 | 68.2 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 19..46 | 680..707 | 113 | 89.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..49 | 680..707 | 113 | 89.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7057..7084 | 680..707 | 113 | 89.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7087 | 680..707 | 113 | 89.3 | Plus |
BS14255.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:52 Download gff for
BS14255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1585 | 17..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:44 Download gff for
BS14255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1585 | 17..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:54 Download gff for
BS14255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1585 | 17..1330 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:08 Download gff for
BS14255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..1585 | 17..1330 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:08 Download gff for
BS14255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5524410..5525723 | 17..1330 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:44 Download gff for
BS14255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5524410..5525723 | 17..1330 | 99 | | Plus |
BS14255.3prime Sequence
562 bp (476 high quality bases) assembled on 2006-10-13
> BS14255.3prime
ATGGTCTAGAAAGCTTCTAGAAATCCAGCGAGGCTGTGGCATTGGAATTG
CTCAGTAGACCAGAGATGCAATTGTCCGGCTTGGCAGATGACTCCTGCAG
CTCCGGGGGCAGATGGAACTTTTCGATGATGAACTTCTTGCGGCGCAACT
TGAAGGCCAAGTCCGGGGTTTCCGGCATGTGCACGGCCAGCGTATTGATG
GCCGACATCTTGTGCAAATGGAGCAGGCCACTGTACTCCTTGAAGGCTGG
GTGCGTTTCACGCTCCGAACCGGCAAACGACTCCAGTTCGATGGCATAGT
CCACCAGTTGGCGGATCTTGGGCACTAGGCTGGCATCGTACTTGGCAATC
AGGTGCATGGGCATCGTGATCAGGCACACGGAGTTGCAGTTCCGCACACT
GGCCATCAGCAGTGTGAGAAACTTGATCAGATCCTCGCCGAAGTGTTCGT
CGTACCACAGCGGCGATCCCAACGAGGTCAGGCAGACGCGGCACAGGTTA
TTCTTGGTCCCAGCGACGAAGCTCTCGTTACGCAGCAGCTGTTGAATATC
GTTGAGCAGTCC
BS14255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-PA | 1314 | CG6907-RA | 769..1314 | 562..17 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-RB | 1512 | CG6907-RB | 881..1426 | 562..17 | 2730 | 100 | Minus |
CG6907-RA | 1671 | CG6907-RA | 1040..1585 | 562..17 | 2730 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5525178..5525723 | 562..17 | 2730 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:54:46 has no hits.
BS14255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:32 Download gff for
BS14255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-PA | 769..1314 | 17..562 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:16 Download gff for
BS14255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 1040..1590 | 9..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:09 Download gff for
BS14255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 1040..1590 | 9..562 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:09 Download gff for
BS14255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5525178..5525728 | 9..562 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:16 Download gff for
BS14255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5525178..5525728 | 9..562 | 99 | | Minus |
BS14255.5prime Sequence
543 bp (485 high quality bases) assembled on 2006-10-13
> BS14255.5prime
GAAGTTATCAGTCGACATGACCAGTTTCCGCAAGCGCACCGTGCAGAAGC
CAATCCGCGGCACCCGCACCTCGCCGCACACGGCGCAGGTGATCACCTCC
AGCGGAAATCCGTACTTGGACGTGGTCATTGGCGGCGGTCTGCCCATGGG
TTCGATCTGCCTGATCGAGGAGGATCGCTTCATGACGCACGCCAAGGTGC
TGGCCAAGTACTTTCTGGCCGAGGGTGTGATTTCCAAGCAGGAGATATTT
CTGGGCAGCCTGGACGACATTCCAGCCGAGATGCTGCGCCGTCTGCCCAG
ACCGCTGACCGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGCGCTGG
GAGATGCTGGCGCCGAAAATGGCCTAAGGATCGCCTGGCGATACAATGAT
CTGCCGCTGGTGAATTCGGAACATGCCACAGCAAAAATCGGACACCATTT
CAATCTGATGGAACAGATGGACTCCATGATGCTCTACAATGTCAAGACTA
CCTTGTGGGACGATAGCCCCCAGCATCTGGACATCGTCATTTG
BS14255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-PA | 1314 | CG6907-RA | 1..525 | 17..541 | 2575 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-RB | 1512 | CG6907-RB | 113..637 | 17..541 | 2595 | 99.6 | Plus |
CG6907-RA | 1671 | CG6907-RA | 272..796 | 17..541 | 2595 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5524410..5524934 | 17..541 | 2595 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:55:02 has no hits.
BS14255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:33 Download gff for
BS14255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-PA | 1..526 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:17 Download gff for
BS14255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..797 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:59 Download gff for
BS14255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6907-RA | 272..797 | 17..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:59 Download gff for
BS14255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5524410..5524935 | 17..543 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:17 Download gff for
BS14255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5524410..5524935 | 17..543 | 99 | | Plus |
BS14255.pep Sequence
Translation from 16 to 1329
> BS14255.pep
MTSFRKRTVQKPIRGTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLI
EEDRFMTHAKVLAKYFLAEGVISKQEIFLGSLDDIPAEMLRRLPRPLTDQ
ESMEQSEVQALGDAGAENGLRIAWRYNDLPLVNSEHATAKIGHHFNLMEQ
MDSMMLYNVKTTLWDDSPKHLDIVIDEEFSKSSSPTTPSLEQQPVEDAPP
IPGTETAPQEKMPAQEEENSANNNNNNNNNSSSVTSSTKTGSQDSPLQVF
HNPRYKGLLNDIQQLLRNESFVAGTKNNLCRVCLTSLGSPLWYDEHFGED
LIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIRQLVDYAIELE
SFAGSERETHPAFKEYSGLLHLHKMSAINTLAVHMPETPDLAFKLRRKKF
IIEKFHLPPELQESSAKPDNCISGLLSNSNATASLDF*
BS14255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6907-PB | 437 | CG6907-PB | 1..437 | 1..437 | 2269 | 100 | Plus |
CG6907-PA | 437 | CG6907-PA | 1..437 | 1..437 | 2269 | 100 | Plus |