Clone BS14255 Report

Search the DGRC for BS14255

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG6907-RA
Protein status:BS14255.pep: full length peptide match
Sequenced Size:1346

Clone Sequence Records

BS14255.complete Sequence

1346 bp assembled on 2009-12-07

GenBank Submission: KX804876

> BS14255.complete
GAAGTTATCAGTCGACATGACCAGTTTCCGCAAGCGCACCGTGCAGAAGC
CAATCCGCGGCACCCGCACCTCGCCGCACACGGCGCAGGTGATCACCTCC
AGCGGAAATCCGTACTTGGACGTGGTCATTGGCGGCGGTCTGCCCATGGG
TTCGATCTGCCTGATCGAGGAGGATCGCTTCATGACGCACGCCAAGGTGC
TGGCCAAGTACTTTCTGGCCGAGGGTGTGATTTCCAAGCAGGAGATATTT
CTGGGCAGCCTGGACGACATTCCAGCCGAGATGCTGCGCCGTCTGCCCAG
ACCGCTGACCGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGCGCTGG
GAGATGCTGGCGCCGAAAATGGCCTAAGGATCGCCTGGCGATACAATGAT
CTGCCGCTGGTGAATTCGGAACATGCCACAGCAAAAATCGGACACCATTT
CAATCTGATGGAACAGATGGACTCCATGATGCTCTACAATGTCAAGACTA
CCTTGTGGGACGATAGCCCCAAGCATCTGGACATCGTCATTGACGAGGAG
TTCTCCAAGAGCAGCTCCCCAACCACTCCGTCGCTGGAGCAGCAGCCCGT
GGAGGATGCCCCACCGATTCCGGGCACGGAGACCGCTCCGCAGGAGAAGA
TGCCAGCCCAGGAGGAGGAGAACTCTGCCAACAACAATAATAACAACAAT
AACAATAGCAGCAGCGTGACCAGTAGCACAAAAACAGGCAGCCAGGATTC
GCCGTTGCAGGTGTTCCACAACCCTCGGTACAAAGGACTGCTCAACGATA
TTCAACAGCTGCTGCGTAACGAGAGCTTCGTCGCTGGGACCAAGAATAAC
CTGTGCCGCGTCTGCCTGACCTCGTTGGGATCGCCGCTGTGGTACGACGA
ACACTTCGGCGAGGATCTGATCAAGTTTCTCACACTGCTGATGGCCAGTG
TGCGGAACTGCAACTCCGTGTGCCTGATCACGATGCCCATGCACCTGATT
GCCAAGTACGATGCCAGCCTAGTGCCCAAGATCCGCCAACTGGTGGACTA
TGCCATCGAACTGGAGTCGTTTGCCGGTTCGGAGCGTGAAACGCACCCAG
CCTTCAAGGAGTACAGTGGCCTGCTCCATTTGCACAAGATGTCGGCCATC
AATACGCTGGCCGTGCACATGCCGGAAACCCCGGACTTGGCCTTCAAGTT
GCGCCGCAAGAAGTTCATCATCGAAAAGTTCCATCTGCCCCCGGAGCTGC
AGGAGTCATCTGCCAAGCCGGACAATTGCATCTCTGGTCTACTGAGCAAT
TCCAATGCCACAGCCTCGCTGGATTTCTAGAAGCTTTCTAGACCAT

BS14255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-RB 1314 CG6907-PB 1..1314 17..1330 6555 99.9 Plus
CG6907-RA 1314 CG6907-PA 1..1314 17..1330 6555 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-RB 1512 CG6907-RB 113..1426 17..1330 6555 99.9 Plus
CG6907-RA 1671 CG6907-RA 272..1585 17..1330 6555 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5524410..5525723 17..1330 6555 99.9 Plus
Blast to na_te.dros performed 2014-11-28 01:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 5648..5713 678..742 129 68.2 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 19..46 680..707 113 89.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 22..49 680..707 113 89.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7057..7084 680..707 113 89.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7060..7087 680..707 113 89.3 Plus

BS14255.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:52 Download gff for BS14255.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 272..1585 17..1330 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:44 Download gff for BS14255.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 272..1585 17..1330 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:54 Download gff for BS14255.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 272..1585 17..1330 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:08 Download gff for BS14255.complete
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 272..1585 17..1330 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:08 Download gff for BS14255.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5524410..5525723 17..1330 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:44 Download gff for BS14255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5524410..5525723 17..1330 99   Plus

BS14255.3prime Sequence

562 bp (476 high quality bases) assembled on 2006-10-13

> BS14255.3prime
ATGGTCTAGAAAGCTTCTAGAAATCCAGCGAGGCTGTGGCATTGGAATTG
CTCAGTAGACCAGAGATGCAATTGTCCGGCTTGGCAGATGACTCCTGCAG
CTCCGGGGGCAGATGGAACTTTTCGATGATGAACTTCTTGCGGCGCAACT
TGAAGGCCAAGTCCGGGGTTTCCGGCATGTGCACGGCCAGCGTATTGATG
GCCGACATCTTGTGCAAATGGAGCAGGCCACTGTACTCCTTGAAGGCTGG
GTGCGTTTCACGCTCCGAACCGGCAAACGACTCCAGTTCGATGGCATAGT
CCACCAGTTGGCGGATCTTGGGCACTAGGCTGGCATCGTACTTGGCAATC
AGGTGCATGGGCATCGTGATCAGGCACACGGAGTTGCAGTTCCGCACACT
GGCCATCAGCAGTGTGAGAAACTTGATCAGATCCTCGCCGAAGTGTTCGT
CGTACCACAGCGGCGATCCCAACGAGGTCAGGCAGACGCGGCACAGGTTA
TTCTTGGTCCCAGCGACGAAGCTCTCGTTACGCAGCAGCTGTTGAATATC
GTTGAGCAGTCC

BS14255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-PA 1314 CG6907-RA 769..1314 562..17 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-RB 1512 CG6907-RB 881..1426 562..17 2730 100 Minus
CG6907-RA 1671 CG6907-RA 1040..1585 562..17 2730 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5525178..5525723 562..17 2730 100 Minus
Blast to na_te.dros performed on 2015-02-12 16:54:46 has no hits.

BS14255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:32 Download gff for BS14255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6907-PA 769..1314 17..562 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:16 Download gff for BS14255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1040..1590 9..562 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:09 Download gff for BS14255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 1040..1590 9..562 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:09 Download gff for BS14255.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5525178..5525728 9..562 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:16 Download gff for BS14255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5525178..5525728 9..562 99   Minus

BS14255.5prime Sequence

543 bp (485 high quality bases) assembled on 2006-10-13

> BS14255.5prime
GAAGTTATCAGTCGACATGACCAGTTTCCGCAAGCGCACCGTGCAGAAGC
CAATCCGCGGCACCCGCACCTCGCCGCACACGGCGCAGGTGATCACCTCC
AGCGGAAATCCGTACTTGGACGTGGTCATTGGCGGCGGTCTGCCCATGGG
TTCGATCTGCCTGATCGAGGAGGATCGCTTCATGACGCACGCCAAGGTGC
TGGCCAAGTACTTTCTGGCCGAGGGTGTGATTTCCAAGCAGGAGATATTT
CTGGGCAGCCTGGACGACATTCCAGCCGAGATGCTGCGCCGTCTGCCCAG
ACCGCTGACCGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGCGCTGG
GAGATGCTGGCGCCGAAAATGGCCTAAGGATCGCCTGGCGATACAATGAT
CTGCCGCTGGTGAATTCGGAACATGCCACAGCAAAAATCGGACACCATTT
CAATCTGATGGAACAGATGGACTCCATGATGCTCTACAATGTCAAGACTA
CCTTGTGGGACGATAGCCCCCAGCATCTGGACATCGTCATTTG

BS14255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-PA 1314 CG6907-RA 1..525 17..541 2575 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-RB 1512 CG6907-RB 113..637 17..541 2595 99.6 Plus
CG6907-RA 1671 CG6907-RA 272..796 17..541 2595 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5524410..5524934 17..541 2595 99.6 Plus
Blast to na_te.dros performed on 2015-02-12 16:55:02 has no hits.

BS14255.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:33 Download gff for BS14255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6907-PA 1..526 17..543 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:17 Download gff for BS14255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 272..797 17..543 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:53:59 Download gff for BS14255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6907-RA 272..797 17..543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:53:59 Download gff for BS14255.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5524410..5524935 17..543 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:17 Download gff for BS14255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5524410..5524935 17..543 99   Plus

BS14255.pep Sequence

Translation from 16 to 1329

> BS14255.pep
MTSFRKRTVQKPIRGTRTSPHTAQVITSSGNPYLDVVIGGGLPMGSICLI
EEDRFMTHAKVLAKYFLAEGVISKQEIFLGSLDDIPAEMLRRLPRPLTDQ
ESMEQSEVQALGDAGAENGLRIAWRYNDLPLVNSEHATAKIGHHFNLMEQ
MDSMMLYNVKTTLWDDSPKHLDIVIDEEFSKSSSPTTPSLEQQPVEDAPP
IPGTETAPQEKMPAQEEENSANNNNNNNNNSSSVTSSTKTGSQDSPLQVF
HNPRYKGLLNDIQQLLRNESFVAGTKNNLCRVCLTSLGSPLWYDEHFGED
LIKFLTLLMASVRNCNSVCLITMPMHLIAKYDASLVPKIRQLVDYAIELE
SFAGSERETHPAFKEYSGLLHLHKMSAINTLAVHMPETPDLAFKLRRKKF
IIEKFHLPPELQESSAKPDNCISGLLSNSNATASLDF*

BS14255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6907-PB 437 CG6907-PB 1..437 1..437 2269 100 Plus
CG6907-PA 437 CG6907-PA 1..437 1..437 2269 100 Plus