Clone BS14256 Report

Search the DGRC for BS14256

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptCG11722-RA
Protein status:BS14256.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14256.3prime Sequence

642 bp (615 high quality bases) assembled on 2006-10-13

> BS14256.3prime
ATGGTCTAGAAAGCTTTTACGGATTACCCTCCGAGCTCGATTTAACCCGC
AGAAGGGGCTGCGTGGCTTGAGTTAGCATCGTGTCTTTGTACTTCTGGTC
GGGTATGTACATATTAAAAGTTTTAAAGTAGTGCAGTATGTTTTCAACTA
GAGGCTCCTTAAGCTTGTACTCATTGGCTATCTTCTTGGCTGGCCAGGAT
TCCGGATCCAACTGGTGGTCATTGATGAACTTAAGCGCCTGGCGCAGTGT
GCAATGACCGGGGCTAATGCGGTTGGGCTCCAGATATCCGTACTCAAAAT
CATCCGGCGTTTTGCGTTCCAGGGGCAGTGGTCGCTGTTCCACATTGTCC
GCCGCCGCCTCAGCTGCCTGGCGCTCCTGCACTCGCTTGATAAATCGATC
CTGCGAGGTTACATAAACGTCTTTCAATCGTCCGTCCAAGCTGGAGTCTT
TCATATTGAGCTTGTCCACGAACTTGGGATCCAATTCCAAGGTGCGCTCC
ATGTCTCTCAAATTCGAGTCAAATTTGGGCGCCGGCGTTGGCTTCTCGCG
CTCGAGGACGCGATGTGCACGATTCTCGACATTGAAGCGATTGGCCCGGC
GGGCAACCATTGAAACCACCTGACCCCTGTCGACTGATAACT

BS14256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11722-PA 612 CG11722-RA 3..612 626..17 3025 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11722-RA 770 CG11722-RA 130..740 626..16 3040 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10044813..10045059 145..391 1220 99.6 Plus
3R 32079331 3R 10045271..10045413 484..626 715 100 Plus
3R 32079331 3R 10044626..10044755 16..145 650 100 Plus
3R 32079331 3R 10045126..10045217 392..483 460 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:51:14 has no hits.

BS14256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:33 Download gff for BS14256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11722-PA 1..612 17..628 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:12 Download gff for BS14256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11722-RA 127..740 16..629 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:20 Download gff for BS14256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11722-RA 127..740 16..629 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:20 Download gff for BS14256.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10044626..10044754 16..144 100 <- Plus
3R 10044813..10045059 145..391 99 <- Plus
3R 10045126..10045217 392..483 100 <- Plus
3R 10045271..10045416 484..629 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:12 Download gff for BS14256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5870348..5870476 16..144 100 <- Plus
arm_3R 5870535..5870781 145..391 99 <- Plus
arm_3R 5870848..5870939 392..483 100 <- Plus
arm_3R 5870993..5871138 484..629 99   Plus

BS14256.5prime Sequence

614 bp (552 high quality bases) assembled on 2006-10-13

> BS14256.5prime
GAAGTTATCAGTCGACATGGGTCAGGTGGTTTCAATGGTTGCCCGCCGGG
CCAATCGCTTCAATGTCGAGAATCGTGCACATCGCGTCCTCGAGCGCGAG
AAGCCAACGCCGGCGCCCAAATTTGACTCGAATTTGAGAGACATGGAGCG
CACCTTGGAATTGGATCCCAAGTTCGTGGACAAGCTCAATATGAAAGACT
CCAGCTTGGACGGACGATTGAAAGACGTTTATGTAACCTCGCAGGATCGA
TTTATCAAGCGAGTGCAGGAGCGCCAGGCAGCTGAGGCGGCGGCGGACAA
TGTGGAACAGCGACCACTGCCCCTGGAACGCAAAACGCCGGATGATTTTG
AGTACGGATATCTGGAGCCCAACCGCATTAGCCCCGGTCATTGCACACTG
CGCCAGGCGCTTAAGTTCATCAATGACCACCAGTTGGATCCGGAATCCTG
GCCAGCCAAGAAGATAGCCAATGAGTACAAGCTTAAGGAGCCTCTAGTTG
AAAACATACTGCACTACTTTAAAACTTTTAATATGTACATACCCGACCAG
AAGTACAAAGACACGATGCTAACTCAAGCCACGCAGCCCCTTCTGCGGTT
AAATCGAGCTCGGA

BS14256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11722-PA 612 CG11722-RA 1..582 17..598 2885 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG11722-RA 770 CG11722-RA 127..726 16..614 2960 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10044813..10045059 500..254 1220 99.6 Minus
3R 32079331 3R 10045271..10045416 161..16 730 100 Minus
3R 32079331 3R 10044640..10044755 614..500 530 99.1 Minus
3R 32079331 3R 10045126..10045217 253..162 460 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:12:13 has no hits.

BS14256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:33 Download gff for BS14256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11722-PA 1..598 17..613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:04 Download gff for BS14256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11722-RA 127..725 16..613 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:30 Download gff for BS14256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11722-RA 127..725 16..613 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:30 Download gff for BS14256.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10044641..10044754 501..613 99 <- Minus
3R 10044813..10045059 254..500 99 <- Minus
3R 10045126..10045217 162..253 100 <- Minus
3R 10045271..10045416 16..161 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:04 Download gff for BS14256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5870363..5870476 501..613 99 <- Minus
arm_3R 5870535..5870781 254..500 99 <- Minus
arm_3R 5870848..5870939 162..253 100 <- Minus
arm_3R 5870993..5871138 16..161 100   Minus

BS14256.complete Sequence

644 bp assembled on 2006-11-01

GenBank Submission: FJ637623

> BS14256.complete
GAAGTTATCAGTCGACATGGGTCAGGTGGTTTCAATGGTTGCCCGCCGGG
CCAATCGCTTCAATGTCGAGAATCGTGCACATCGCGTCCTCGAGCGCGAG
AAGCCAACGCCGGCGCCCAAATTTGACTCGAATTTGAGAGACATGGAGCG
CACCTTGGAATTGGATCCCAAGTTCGTGGACAAGCTCAATATGAAAGACT
CCAGCTTGGACGGACGATTGAAAGACGTTTATGTAACCTCGCAGGATCGA
TTTATCAAGCGAGTGCAGGAGCGCCAGGCAGCTGAGGCGGCGGCGGACAA
TGTGGAACAGCGACCACTGCCCCTGGAACGCAAAACGCCGGATGATTTTG
AGTACGGATATCTGGAGCCCAACCGCATTAGCCCCGGTCATTGCACACTG
CGCCAGGCGCTTAAGTTCATCAATGACCACCAGTTGGATCCGGAATCCTG
GCCAGCCAAGAAGATAGCCAATGAGTACAAGCTTAAGGAGCCTCTAGTTG
AAAACATACTGCACTACTTTAAAACTTTTAATATGTACATACCCGACCAG
AAGTACAAAGACACGATGCTAACTCAAGCCACGCAGCCCCTTCTGCGGGT
TAAATCGAGCTCGGAGGGTAATCCGTAAAAGCTTTCTAGACCAT

BS14256.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11722-RA 612 CG11722-PA 1..612 17..628 3045 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11722-RA 770 CG11722-RA 127..740 16..629 3055 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10044813..10045059 500..254 1220 99.6 Minus
3R 32079331 3R 10045271..10045416 161..16 730 100 Minus
3R 32079331 3R 10044626..10044755 629..500 650 100 Minus
3R 32079331 3R 10045126..10045217 253..162 460 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:07:49 has no hits.

BS14256.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:34 Download gff for BS14256.complete
Subject Subject Range Query Range Percent Splice Strand
CG11722-RA 1..612 17..628 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:48 Download gff for BS14256.complete
Subject Subject Range Query Range Percent Splice Strand
CG11722-RA 108..721 16..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:57:54 Download gff for BS14256.complete
Subject Subject Range Query Range Percent Splice Strand
CG11722-RA 128..737 17..626 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:34 Download gff for BS14256.complete
Subject Subject Range Query Range Percent Splice Strand
CG11722-RA 108..721 16..629 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:31 Download gff for BS14256.complete
Subject Subject Range Query Range Percent Splice Strand
CG11722-RA 128..737 17..626 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:31 Download gff for BS14256.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10044629..10044754 501..626 100 <- Minus
3R 10044813..10045059 254..500 99 <- Minus
3R 10045126..10045217 162..253 100 <- Minus
3R 10045271..10045415 17..161 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:57:54 Download gff for BS14256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5870351..5870476 501..626 100 <- Minus
arm_3R 5870535..5870781 254..500 99 <- Minus
arm_3R 5870848..5870939 162..253 100 <- Minus
arm_3R 5870993..5871137 17..161 100   Minus

BS14256.pep Sequence

Translation from 16 to 627

> BS14256.pep
MGQVVSMVARRANRFNVENRAHRVLEREKPTPAPKFDSNLRDMERTLELD
PKFVDKLNMKDSSLDGRLKDVYVTSQDRFIKRVQERQAAEAAADNVEQRP
LPLERKTPDDFEYGYLEPNRISPGHCTLRQALKFINDHQLDPESWPAKKI
ANEYKLKEPLVENILHYFKTFNMYIPDQKYKDTMLTQATQPLLRVKSSSE
GNP*

BS14256.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11722-PA 203 CG11722-PA 1..203 1..203 1061 100 Plus