Clone Sequence Records
BS14256.3prime Sequence
642 bp (615 high quality bases) assembled on 2006-10-13
> BS14256.3prime
ATGGTCTAGAAAGCTTTTACGGATTACCCTCCGAGCTCGATTTAACCCGC
AGAAGGGGCTGCGTGGCTTGAGTTAGCATCGTGTCTTTGTACTTCTGGTC
GGGTATGTACATATTAAAAGTTTTAAAGTAGTGCAGTATGTTTTCAACTA
GAGGCTCCTTAAGCTTGTACTCATTGGCTATCTTCTTGGCTGGCCAGGAT
TCCGGATCCAACTGGTGGTCATTGATGAACTTAAGCGCCTGGCGCAGTGT
GCAATGACCGGGGCTAATGCGGTTGGGCTCCAGATATCCGTACTCAAAAT
CATCCGGCGTTTTGCGTTCCAGGGGCAGTGGTCGCTGTTCCACATTGTCC
GCCGCCGCCTCAGCTGCCTGGCGCTCCTGCACTCGCTTGATAAATCGATC
CTGCGAGGTTACATAAACGTCTTTCAATCGTCCGTCCAAGCTGGAGTCTT
TCATATTGAGCTTGTCCACGAACTTGGGATCCAATTCCAAGGTGCGCTCC
ATGTCTCTCAAATTCGAGTCAAATTTGGGCGCCGGCGTTGGCTTCTCGCG
CTCGAGGACGCGATGTGCACGATTCTCGACATTGAAGCGATTGGCCCGGC
GGGCAACCATTGAAACCACCTGACCCCTGTCGACTGATAACT
BS14256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11722-PA | 612 | CG11722-RA | 3..612 | 626..17 | 3025 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11722-RA | 770 | CG11722-RA | 130..740 | 626..16 | 3040 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10044813..10045059 | 145..391 | 1220 | 99.6 | Plus |
3R | 32079331 | 3R | 10045271..10045413 | 484..626 | 715 | 100 | Plus |
3R | 32079331 | 3R | 10044626..10044755 | 16..145 | 650 | 100 | Plus |
3R | 32079331 | 3R | 10045126..10045217 | 392..483 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:51:14 has no hits.
BS14256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:33 Download gff for
BS14256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-PA | 1..612 | 17..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:12 Download gff for
BS14256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-RA | 127..740 | 16..629 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:20 Download gff for
BS14256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-RA | 127..740 | 16..629 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:20 Download gff for
BS14256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10044626..10044754 | 16..144 | 100 | <- | Plus |
3R | 10044813..10045059 | 145..391 | 99 | <- | Plus |
3R | 10045126..10045217 | 392..483 | 100 | <- | Plus |
3R | 10045271..10045416 | 484..629 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:12 Download gff for
BS14256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5870348..5870476 | 16..144 | 100 | <- | Plus |
arm_3R | 5870535..5870781 | 145..391 | 99 | <- | Plus |
arm_3R | 5870848..5870939 | 392..483 | 100 | <- | Plus |
arm_3R | 5870993..5871138 | 484..629 | 99 | | Plus |
BS14256.5prime Sequence
614 bp (552 high quality bases) assembled on 2006-10-13
> BS14256.5prime
GAAGTTATCAGTCGACATGGGTCAGGTGGTTTCAATGGTTGCCCGCCGGG
CCAATCGCTTCAATGTCGAGAATCGTGCACATCGCGTCCTCGAGCGCGAG
AAGCCAACGCCGGCGCCCAAATTTGACTCGAATTTGAGAGACATGGAGCG
CACCTTGGAATTGGATCCCAAGTTCGTGGACAAGCTCAATATGAAAGACT
CCAGCTTGGACGGACGATTGAAAGACGTTTATGTAACCTCGCAGGATCGA
TTTATCAAGCGAGTGCAGGAGCGCCAGGCAGCTGAGGCGGCGGCGGACAA
TGTGGAACAGCGACCACTGCCCCTGGAACGCAAAACGCCGGATGATTTTG
AGTACGGATATCTGGAGCCCAACCGCATTAGCCCCGGTCATTGCACACTG
CGCCAGGCGCTTAAGTTCATCAATGACCACCAGTTGGATCCGGAATCCTG
GCCAGCCAAGAAGATAGCCAATGAGTACAAGCTTAAGGAGCCTCTAGTTG
AAAACATACTGCACTACTTTAAAACTTTTAATATGTACATACCCGACCAG
AAGTACAAAGACACGATGCTAACTCAAGCCACGCAGCCCCTTCTGCGGTT
AAATCGAGCTCGGA
BS14256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11722-PA | 612 | CG11722-RA | 1..582 | 17..598 | 2885 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11722-RA | 770 | CG11722-RA | 127..726 | 16..614 | 2960 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10044813..10045059 | 500..254 | 1220 | 99.6 | Minus |
3R | 32079331 | 3R | 10045271..10045416 | 161..16 | 730 | 100 | Minus |
3R | 32079331 | 3R | 10044640..10044755 | 614..500 | 530 | 99.1 | Minus |
3R | 32079331 | 3R | 10045126..10045217 | 253..162 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:12:13 has no hits.
BS14256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:33 Download gff for
BS14256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-PA | 1..598 | 17..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:04 Download gff for
BS14256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-RA | 127..725 | 16..613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:30 Download gff for
BS14256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-RA | 127..725 | 16..613 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:30 Download gff for
BS14256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10044641..10044754 | 501..613 | 99 | <- | Minus |
3R | 10044813..10045059 | 254..500 | 99 | <- | Minus |
3R | 10045126..10045217 | 162..253 | 100 | <- | Minus |
3R | 10045271..10045416 | 16..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:04 Download gff for
BS14256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5870363..5870476 | 501..613 | 99 | <- | Minus |
arm_3R | 5870535..5870781 | 254..500 | 99 | <- | Minus |
arm_3R | 5870848..5870939 | 162..253 | 100 | <- | Minus |
arm_3R | 5870993..5871138 | 16..161 | 100 | | Minus |
BS14256.complete Sequence
644 bp assembled on 2006-11-01
GenBank Submission: FJ637623
> BS14256.complete
GAAGTTATCAGTCGACATGGGTCAGGTGGTTTCAATGGTTGCCCGCCGGG
CCAATCGCTTCAATGTCGAGAATCGTGCACATCGCGTCCTCGAGCGCGAG
AAGCCAACGCCGGCGCCCAAATTTGACTCGAATTTGAGAGACATGGAGCG
CACCTTGGAATTGGATCCCAAGTTCGTGGACAAGCTCAATATGAAAGACT
CCAGCTTGGACGGACGATTGAAAGACGTTTATGTAACCTCGCAGGATCGA
TTTATCAAGCGAGTGCAGGAGCGCCAGGCAGCTGAGGCGGCGGCGGACAA
TGTGGAACAGCGACCACTGCCCCTGGAACGCAAAACGCCGGATGATTTTG
AGTACGGATATCTGGAGCCCAACCGCATTAGCCCCGGTCATTGCACACTG
CGCCAGGCGCTTAAGTTCATCAATGACCACCAGTTGGATCCGGAATCCTG
GCCAGCCAAGAAGATAGCCAATGAGTACAAGCTTAAGGAGCCTCTAGTTG
AAAACATACTGCACTACTTTAAAACTTTTAATATGTACATACCCGACCAG
AAGTACAAAGACACGATGCTAACTCAAGCCACGCAGCCCCTTCTGCGGGT
TAAATCGAGCTCGGAGGGTAATCCGTAAAAGCTTTCTAGACCAT
BS14256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11722-RA | 612 | CG11722-PA | 1..612 | 17..628 | 3045 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11722-RA | 770 | CG11722-RA | 127..740 | 16..629 | 3055 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10044813..10045059 | 500..254 | 1220 | 99.6 | Minus |
3R | 32079331 | 3R | 10045271..10045416 | 161..16 | 730 | 100 | Minus |
3R | 32079331 | 3R | 10044626..10044755 | 629..500 | 650 | 100 | Minus |
3R | 32079331 | 3R | 10045126..10045217 | 253..162 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:07:49 has no hits.
BS14256.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:34 Download gff for
BS14256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-RA | 1..612 | 17..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:48 Download gff for
BS14256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-RA | 108..721 | 16..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:57:54 Download gff for
BS14256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-RA | 128..737 | 17..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:34 Download gff for
BS14256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-RA | 108..721 | 16..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:31 Download gff for
BS14256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11722-RA | 128..737 | 17..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:31 Download gff for
BS14256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10044629..10044754 | 501..626 | 100 | <- | Minus |
3R | 10044813..10045059 | 254..500 | 99 | <- | Minus |
3R | 10045126..10045217 | 162..253 | 100 | <- | Minus |
3R | 10045271..10045415 | 17..161 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:57:54 Download gff for
BS14256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5870351..5870476 | 501..626 | 100 | <- | Minus |
arm_3R | 5870535..5870781 | 254..500 | 99 | <- | Minus |
arm_3R | 5870848..5870939 | 162..253 | 100 | <- | Minus |
arm_3R | 5870993..5871137 | 17..161 | 100 | | Minus |
BS14256.pep Sequence
Translation from 16 to 627
> BS14256.pep
MGQVVSMVARRANRFNVENRAHRVLEREKPTPAPKFDSNLRDMERTLELD
PKFVDKLNMKDSSLDGRLKDVYVTSQDRFIKRVQERQAAEAAADNVEQRP
LPLERKTPDDFEYGYLEPNRISPGHCTLRQALKFINDHQLDPESWPAKKI
ANEYKLKEPLVENILHYFKTFNMYIPDQKYKDTMLTQATQPLLRVKSSSE
GNP*
BS14256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11722-PA | 203 | CG11722-PA | 1..203 | 1..203 | 1061 | 100 | Plus |