Clone BS14259 Report

Search the DGRC for BS14259

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptSyt14-RA
Protein status:BS14259.pep: full length peptide match
Sequenced Size:1793

Clone Sequence Records

BS14259.complete Sequence

1793 bp assembled on 2009-12-07

GenBank Submission: KX804925

> BS14259.complete
GAAGTTATCAGTCGACATGATTGTTACCTCCGCTTCTGGACTGGATAGCA
CTCCGACGCTCGGCACCATCGAGGTGACCACTTTGCTGGGCGCCTTTTTC
GGCGTCCTCGTTCTACTGCTCCTGTTGTTTCTTTTCATCAGTCGCAAGTG
CTGTTTTCACTACCGCCATGCCATCAACTGCTGCGACGAGCGCCACCTTG
CAGTCAAGTGTGTGCAGAAGATCACCCGCAAAAGGCGTTACGAGAACACC
AGCTCCGACTCGGAGGAAGACATCTTGAGGCGCCTGCGGTGGCATCAACA
GCACCAACTGGGCGAGAAGCCTGGCGGATACGGGCTGGGAATCAGCCAGG
CTAATCCGCTGACGGCGCAGAGCTTCAACTACCACCAAGCAGGCGCAAGT
GCCGACCTGCAGCGTGTGACGGTGTCGCGTGACCCCTTAGCCATCGCCGA
GCGTGGCAAGGTTGGAATCCCGTCATCGCACAGTGAGTGCAGCTCGAACG
ATTCCATGGAGGTCTCCGTGGACAGTCACACAGGCGTCCTGACGGGTCTG
AGCAAAGCCACAACCACAGTTCCCCACCCGGCGACAGCCTTCCGCAATCC
GTGTGGAGAACACCGGGCCAAGACCCAGGCACTGAGGTACCAGCACCGGG
TCAACGTGGCTGCTCCGCCAAAGCTGGACAAGGAACGGGACAACGTGCTG
GTGGTGCCCATGGTCAATGCCTACAGCATTAACAACAACAACAACTCGAT
AACAACCAGCAATAACCATCCCAGCAGCAACAACAACGATGACGAACCCC
TATTTGACACCAGCGATTTGCGCTCGATCAAGTCGGATGACCTACTGGTT
GGTGTGGACCAGAAGGAGCCGGCCGTGCAGAGGGGTCCCATCGAGCTGGA
GCTGTCGCTGCTGTACGACGCCCCAATGCGGAAAATGACGGTGCACGTGA
TGCAGGCAAAAAATCTTCCGCCCCTGGGTAGTGGGCAGACCACCCACACG
CAGGTCCGGATGCTGATGCTGCCAAGCAAAAAGCAGAAGCTCAAAACCAA
GATCCGTAGCGGCGAAAATCCACAGTATATGGAGAGCTTTCTTCTCCATC
GCGTCAACCCAGAAGATGTGAACAACATGGGGCTGCGTGTGCGGCTTTAC
GGCTGCGAGCGGCTGCGCAAGGAACGCCTGATTGGGGAGGCGTATGTGAG
CTTCGCCACTGTTGACCTTGAACTGGAAACAAACCTATGGCTGCCGCTGG
AGCCACGAAACACCTCGTCGGGCCTGGGTTCTACTAGCGATCTGTTAAGC
CTGGCTCGGTCAGAAAGCGCGGGCTCCACCTCGTCCATGCAGCACGGGGG
CGTCTCCGAGTTGCTGCTGGGTTTGAGCTACAACGGGGTCACTGGGCGTC
TGAGCGTCGAGATCATCAAGGGAAGCCAGTTCCGCAGCTTGTCGCTGAAC
AAGGCGCCCGACACGTACGTTAAAATGGTTATGGTCAGCAGCATCGGACA
AGAGATCTCCCGGGCCAAAACGTCAATCCGCAGGGGTCAGCCTAACCCGC
TTTTTAAGGAGACATTCGCCTTTCAGGTGGCCCTGTTCCAGCTCAACGAT
GTTACTCTGATGATCTCTGTGTACGCCAAGCGGCACATGAAGAAAAACGA
GATGGTCGGCTGGTTCAGCCTGGGTCTGAACTCGTCCGGATCAGAGGAAG
TGGCCCATTGGGCAGACGTGTGCGAGATGCCCAAGGGAGAGATGCTGGCG
CGTTGGCATGTGCTGGTGGACTCCTGAAAGCTTTCTAGACCAT

BS14259.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Syt14-RD 1947 CG9778-PD 1..1761 17..1777 8805 100 Plus
Syt14-RC 1761 CG9778-PC 1..1761 17..1777 8805 100 Plus
Syt14-RA 1761 CG9778-PA 1..1761 17..1777 8805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Syt14-RD 2736 CG9778-RD 443..2203 17..1777 8805 100 Plus
Syt14-RC 3871 CG9778-RC 443..2203 17..1777 8805 100 Plus
Syt14-RA 2736 CG9778-RA 443..2203 17..1777 8805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4316123..4317106 1777..794 4920 100 Minus
3R 32079331 3R 4317956..4318288 557..225 1665 100 Minus
3R 32079331 3R 4317653..4317891 794..556 1195 100 Minus
3R 32079331 3R 4318348..4318510 224..62 815 100 Minus
3R 32079331 3R 4318581..4318627 63..17 235 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:40:37 has no hits.

BS14259.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:14 Download gff for BS14259.complete
Subject Subject Range Query Range Percent Splice Strand
CG9778-RA 1..1761 17..1777 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:26 Download gff for BS14259.complete
Subject Subject Range Query Range Percent Splice Strand
CG9778-RA 443..2202 17..1776 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:31 Download gff for BS14259.complete
Subject Subject Range Query Range Percent Splice Strand
Syt14-RA 443..2202 17..1776 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:50 Download gff for BS14259.complete
Subject Subject Range Query Range Percent Splice Strand
CG9778-RA 443..2202 17..1776 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:20 Download gff for BS14259.complete
Subject Subject Range Query Range Percent Splice Strand
Syt14-RA 443..2202 17..1776 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:20 Download gff for BS14259.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4316124..4317106 794..1776 100 <- Minus
3R 4317654..4317889 558..793 100 <- Minus
3R 4317956..4318288 225..557 100 <- Minus
3R 4318348..4318509 63..224 100 <- Minus
3R 4318582..4318627 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:31 Download gff for BS14259.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 141846..142828 794..1776 100 <- Minus
arm_3R 143376..143611 558..793 100 <- Minus
arm_3R 143678..144010 225..557 100 <- Minus
arm_3R 144070..144231 63..224 100 <- Minus
arm_3R 144304..144349 17..62 100   Minus

BS14259.3prime Sequence

575 bp (516 high quality bases) assembled on 2006-10-13

> BS14259.3prime
ATGGTCTAGAAAGCTTTCAGGAGTCCACCAGCACATGCCAACGCGCCAGC
ATCTCTCCCTTGGGCATCTCGCACACGTCTGCCCAATGGGCCACTTCCTC
TGATCCGGACGAGTTCAGACCCAGGCTGAACCAGCCGACCATCTCGTTTT
TCTTCATGTGCCGCTTGGCGTACACAGAGATCATCAGAGTAACATCGTTG
AGCTGGAACAGGGCCACCTGAAAGGCGAATGTCTCCTTAAAAAGCGGGTT
AGGCTGACCCCTGCGGATTGACGTTTTGGCCCGGGAGATCTCTTGTCCGA
TGCTGCTGACCATAACCATTTTAACGTACGTGTCGGGCGCCTTGTTCAGC
GACAAGCTGCGGAACTGGCTTCCCTTGATGATCTCGACGCTCAGACGCCC
AGTGACCCCGTTGTAGCTCAAACCCAGCAGCAACTCGGAGACGCCCCCGT
GCTGCATGGACGAGGTGGAGCCCGCGCTTTCTGACCGAGCCAGGCTTAAC
AGATCGCTAGTAGAACCCAAGCCCGACAAGGTGTTTCGTGGCTCCAGCGG
GCAGCCATAGGTTTGTTTTCCAGTT

BS14259.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9778-PA 1761 CG9778-RA 1211..1761 568..17 2670 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Syt14-RD 2736 CG9778-RD 1647..2203 575..17 2715 99.3 Minus
Syt14-RC 3871 CG9778-RC 1647..2203 575..17 2715 99.3 Minus
Syt14-RA 2736 CG9778-RA 1647..2203 575..17 2715 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4316123..4316673 17..568 2680 99.5 Plus
Blast to na_te.dros performed on 2015-02-12 04:42:02 has no hits.

BS14259.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:36 Download gff for BS14259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9778-PA 1205..1761 17..575 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:17:27 Download gff for BS14259.3prime
Subject Subject Range Query Range Percent Splice Strand
Syt14-RA 1647..2203 17..575 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:16 Download gff for BS14259.3prime
Subject Subject Range Query Range Percent Splice Strand
Syt14-RA 1647..2203 17..575 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:16 Download gff for BS14259.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4316123..4316679 17..575 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:17:27 Download gff for BS14259.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 141845..142401 17..575 99   Plus

BS14259.5prime Sequence

571 bp (543 high quality bases) assembled on 2006-10-13

> BS14259.5prime
GAAGTTATCAGTCGACATGATTGTTACCTCCGCTTCTGGACTGGATAGCA
CTCCGACGCTCGGCACCATCGAGGTGACCACTTTGCTGGGCGCCTTTTTC
GGCGTCCTCGTTCTACTGCTCCTGTTGTTTCTTTTCATCAGTCGCAAGTG
CTGTTTTCACTACCGCCATGCCATCAACTGCTGCGACGAGCGCCACCTTG
CAGTCAAGTGTGTGCAGAAGATCACCCGCAAAAGGCGTTACGAGAACACC
AGCTCCGACTCGGAGGAAGACATCTTGAGGCGCCTGCGGTGGCATCAACA
GCACCAACTGGGCGAGAAGCCTGGCGGATACGGGCTGGGAATCAGCCAGG
CTAATCCGCTGACGGCGCAGAGCTTCAACTACCACCAAGCAGGCGCAAGT
GCCGACCTGCAGCGTGTGACGGTGTCGCGTGACCCCTTAGCCATCGCCGA
GCGTGGCAAGGTTGGAATCCCGTCATCGCACAGTGAGTGCAGCTCGAACG
ATTCCATGGAGGTCTCCGTGGACAGTCACACAGGCGTCCTGACGGGTCTG
AGCAAAGCCACAACCACAGTT

BS14259.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9778-PA 1761 CG9778-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
Syt14-RD 2736 CG9778-RD 443..997 17..571 2775 100 Plus
Syt14-RC 3871 CG9778-RC 443..997 17..571 2775 100 Plus
Syt14-RA 2736 CG9778-RA 443..997 17..571 2775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4317956..4318288 557..225 1665 100 Minus
3R 32079331 3R 4318348..4318510 224..62 815 100 Minus
3R 32079331 3R 4318581..4318627 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:08:19 has no hits.

BS14259.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:37 Download gff for BS14259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9778-PA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:25 Download gff for BS14259.5prime
Subject Subject Range Query Range Percent Splice Strand
Syt14-RA 433..997 7..571 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:14 Download gff for BS14259.5prime
Subject Subject Range Query Range Percent Splice Strand
Syt14-RA 433..997 7..571 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:14 Download gff for BS14259.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4317956..4318288 225..557 100 <- Minus
3R 4318348..4318509 63..224 100 <- Minus
3R 4318582..4318637 7..62 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:25 Download gff for BS14259.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 143678..144010 225..557 100 <- Minus
arm_3R 144070..144231 63..224 100 <- Minus
arm_3R 144304..144359 7..62 92   Minus

BS14259.pep Sequence

Translation from 16 to 1776

> BS14259.pep
MIVTSASGLDSTPTLGTIEVTTLLGAFFGVLVLLLLLFLFISRKCCFHYR
HAINCCDERHLAVKCVQKITRKRRYENTSSDSEEDILRRLRWHQQHQLGE
KPGGYGLGISQANPLTAQSFNYHQAGASADLQRVTVSRDPLAIAERGKVG
IPSSHSECSSNDSMEVSVDSHTGVLTGLSKATTTVPHPATAFRNPCGEHR
AKTQALRYQHRVNVAAPPKLDKERDNVLVVPMVNAYSINNNNNSITTSNN
HPSSNNNDDEPLFDTSDLRSIKSDDLLVGVDQKEPAVQRGPIELELSLLY
DAPMRKMTVHVMQAKNLPPLGSGQTTHTQVRMLMLPSKKQKLKTKIRSGE
NPQYMESFLLHRVNPEDVNNMGLRVRLYGCERLRKERLIGEAYVSFATVD
LELETNLWLPLEPRNTSSGLGSTSDLLSLARSESAGSTSSMQHGGVSELL
LGLSYNGVTGRLSVEIIKGSQFRSLSLNKAPDTYVKMVMVSSIGQEISRA
KTSIRRGQPNPLFKETFAFQVALFQLNDVTLMISVYAKRHMKKNEMVGWF
SLGLNSSGSEEVAHWADVCEMPKGEMLARWHVLVDS*

BS14259.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
Syt14-PD 648 CG9778-PD 1..586 1..586 3018 100 Plus
Syt14-PC 586 CG9778-PC 1..586 1..586 3018 100 Plus
Syt14-PA 586 CG9778-PA 1..586 1..586 3018 100 Plus
Syt1-PE 472 CG3139-PE 183..460 281..585 308 27.5 Plus
Syt1-PI 472 CG3139-PI 181..460 281..585 306 27.1 Plus