Clone Sequence Records
BS14259.complete Sequence
1793 bp assembled on 2009-12-07
GenBank Submission: KX804925
> BS14259.complete
GAAGTTATCAGTCGACATGATTGTTACCTCCGCTTCTGGACTGGATAGCA
CTCCGACGCTCGGCACCATCGAGGTGACCACTTTGCTGGGCGCCTTTTTC
GGCGTCCTCGTTCTACTGCTCCTGTTGTTTCTTTTCATCAGTCGCAAGTG
CTGTTTTCACTACCGCCATGCCATCAACTGCTGCGACGAGCGCCACCTTG
CAGTCAAGTGTGTGCAGAAGATCACCCGCAAAAGGCGTTACGAGAACACC
AGCTCCGACTCGGAGGAAGACATCTTGAGGCGCCTGCGGTGGCATCAACA
GCACCAACTGGGCGAGAAGCCTGGCGGATACGGGCTGGGAATCAGCCAGG
CTAATCCGCTGACGGCGCAGAGCTTCAACTACCACCAAGCAGGCGCAAGT
GCCGACCTGCAGCGTGTGACGGTGTCGCGTGACCCCTTAGCCATCGCCGA
GCGTGGCAAGGTTGGAATCCCGTCATCGCACAGTGAGTGCAGCTCGAACG
ATTCCATGGAGGTCTCCGTGGACAGTCACACAGGCGTCCTGACGGGTCTG
AGCAAAGCCACAACCACAGTTCCCCACCCGGCGACAGCCTTCCGCAATCC
GTGTGGAGAACACCGGGCCAAGACCCAGGCACTGAGGTACCAGCACCGGG
TCAACGTGGCTGCTCCGCCAAAGCTGGACAAGGAACGGGACAACGTGCTG
GTGGTGCCCATGGTCAATGCCTACAGCATTAACAACAACAACAACTCGAT
AACAACCAGCAATAACCATCCCAGCAGCAACAACAACGATGACGAACCCC
TATTTGACACCAGCGATTTGCGCTCGATCAAGTCGGATGACCTACTGGTT
GGTGTGGACCAGAAGGAGCCGGCCGTGCAGAGGGGTCCCATCGAGCTGGA
GCTGTCGCTGCTGTACGACGCCCCAATGCGGAAAATGACGGTGCACGTGA
TGCAGGCAAAAAATCTTCCGCCCCTGGGTAGTGGGCAGACCACCCACACG
CAGGTCCGGATGCTGATGCTGCCAAGCAAAAAGCAGAAGCTCAAAACCAA
GATCCGTAGCGGCGAAAATCCACAGTATATGGAGAGCTTTCTTCTCCATC
GCGTCAACCCAGAAGATGTGAACAACATGGGGCTGCGTGTGCGGCTTTAC
GGCTGCGAGCGGCTGCGCAAGGAACGCCTGATTGGGGAGGCGTATGTGAG
CTTCGCCACTGTTGACCTTGAACTGGAAACAAACCTATGGCTGCCGCTGG
AGCCACGAAACACCTCGTCGGGCCTGGGTTCTACTAGCGATCTGTTAAGC
CTGGCTCGGTCAGAAAGCGCGGGCTCCACCTCGTCCATGCAGCACGGGGG
CGTCTCCGAGTTGCTGCTGGGTTTGAGCTACAACGGGGTCACTGGGCGTC
TGAGCGTCGAGATCATCAAGGGAAGCCAGTTCCGCAGCTTGTCGCTGAAC
AAGGCGCCCGACACGTACGTTAAAATGGTTATGGTCAGCAGCATCGGACA
AGAGATCTCCCGGGCCAAAACGTCAATCCGCAGGGGTCAGCCTAACCCGC
TTTTTAAGGAGACATTCGCCTTTCAGGTGGCCCTGTTCCAGCTCAACGAT
GTTACTCTGATGATCTCTGTGTACGCCAAGCGGCACATGAAGAAAAACGA
GATGGTCGGCTGGTTCAGCCTGGGTCTGAACTCGTCCGGATCAGAGGAAG
TGGCCCATTGGGCAGACGTGTGCGAGATGCCCAAGGGAGAGATGCTGGCG
CGTTGGCATGTGCTGGTGGACTCCTGAAAGCTTTCTAGACCAT
BS14259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syt14-RD | 1947 | CG9778-PD | 1..1761 | 17..1777 | 8805 | 100 | Plus |
Syt14-RC | 1761 | CG9778-PC | 1..1761 | 17..1777 | 8805 | 100 | Plus |
Syt14-RA | 1761 | CG9778-PA | 1..1761 | 17..1777 | 8805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syt14-RD | 2736 | CG9778-RD | 443..2203 | 17..1777 | 8805 | 100 | Plus |
Syt14-RC | 3871 | CG9778-RC | 443..2203 | 17..1777 | 8805 | 100 | Plus |
Syt14-RA | 2736 | CG9778-RA | 443..2203 | 17..1777 | 8805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4316123..4317106 | 1777..794 | 4920 | 100 | Minus |
3R | 32079331 | 3R | 4317956..4318288 | 557..225 | 1665 | 100 | Minus |
3R | 32079331 | 3R | 4317653..4317891 | 794..556 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 4318348..4318510 | 224..62 | 815 | 100 | Minus |
3R | 32079331 | 3R | 4318581..4318627 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:40:37 has no hits.
BS14259.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:14 Download gff for
BS14259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9778-RA | 1..1761 | 17..1777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:26 Download gff for
BS14259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9778-RA | 443..2202 | 17..1776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:31 Download gff for
BS14259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syt14-RA | 443..2202 | 17..1776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:50 Download gff for
BS14259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9778-RA | 443..2202 | 17..1776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:20 Download gff for
BS14259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syt14-RA | 443..2202 | 17..1776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:20 Download gff for
BS14259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4316124..4317106 | 794..1776 | 100 | <- | Minus |
3R | 4317654..4317889 | 558..793 | 100 | <- | Minus |
3R | 4317956..4318288 | 225..557 | 100 | <- | Minus |
3R | 4318348..4318509 | 63..224 | 100 | <- | Minus |
3R | 4318582..4318627 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:31 Download gff for
BS14259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 141846..142828 | 794..1776 | 100 | <- | Minus |
arm_3R | 143376..143611 | 558..793 | 100 | <- | Minus |
arm_3R | 143678..144010 | 225..557 | 100 | <- | Minus |
arm_3R | 144070..144231 | 63..224 | 100 | <- | Minus |
arm_3R | 144304..144349 | 17..62 | 100 | | Minus |
BS14259.3prime Sequence
575 bp (516 high quality bases) assembled on 2006-10-13
> BS14259.3prime
ATGGTCTAGAAAGCTTTCAGGAGTCCACCAGCACATGCCAACGCGCCAGC
ATCTCTCCCTTGGGCATCTCGCACACGTCTGCCCAATGGGCCACTTCCTC
TGATCCGGACGAGTTCAGACCCAGGCTGAACCAGCCGACCATCTCGTTTT
TCTTCATGTGCCGCTTGGCGTACACAGAGATCATCAGAGTAACATCGTTG
AGCTGGAACAGGGCCACCTGAAAGGCGAATGTCTCCTTAAAAAGCGGGTT
AGGCTGACCCCTGCGGATTGACGTTTTGGCCCGGGAGATCTCTTGTCCGA
TGCTGCTGACCATAACCATTTTAACGTACGTGTCGGGCGCCTTGTTCAGC
GACAAGCTGCGGAACTGGCTTCCCTTGATGATCTCGACGCTCAGACGCCC
AGTGACCCCGTTGTAGCTCAAACCCAGCAGCAACTCGGAGACGCCCCCGT
GCTGCATGGACGAGGTGGAGCCCGCGCTTTCTGACCGAGCCAGGCTTAAC
AGATCGCTAGTAGAACCCAAGCCCGACAAGGTGTTTCGTGGCTCCAGCGG
GCAGCCATAGGTTTGTTTTCCAGTT
BS14259.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9778-PA | 1761 | CG9778-RA | 1211..1761 | 568..17 | 2670 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:42:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syt14-RD | 2736 | CG9778-RD | 1647..2203 | 575..17 | 2715 | 99.3 | Minus |
Syt14-RC | 3871 | CG9778-RC | 1647..2203 | 575..17 | 2715 | 99.3 | Minus |
Syt14-RA | 2736 | CG9778-RA | 1647..2203 | 575..17 | 2715 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4316123..4316673 | 17..568 | 2680 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:42:02 has no hits.
BS14259.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:36 Download gff for
BS14259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9778-PA | 1205..1761 | 17..575 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:17:27 Download gff for
BS14259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syt14-RA | 1647..2203 | 17..575 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:16 Download gff for
BS14259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syt14-RA | 1647..2203 | 17..575 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:16 Download gff for
BS14259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4316123..4316679 | 17..575 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:17:27 Download gff for
BS14259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 141845..142401 | 17..575 | 99 | | Plus |
BS14259.5prime Sequence
571 bp (543 high quality bases) assembled on 2006-10-13
> BS14259.5prime
GAAGTTATCAGTCGACATGATTGTTACCTCCGCTTCTGGACTGGATAGCA
CTCCGACGCTCGGCACCATCGAGGTGACCACTTTGCTGGGCGCCTTTTTC
GGCGTCCTCGTTCTACTGCTCCTGTTGTTTCTTTTCATCAGTCGCAAGTG
CTGTTTTCACTACCGCCATGCCATCAACTGCTGCGACGAGCGCCACCTTG
CAGTCAAGTGTGTGCAGAAGATCACCCGCAAAAGGCGTTACGAGAACACC
AGCTCCGACTCGGAGGAAGACATCTTGAGGCGCCTGCGGTGGCATCAACA
GCACCAACTGGGCGAGAAGCCTGGCGGATACGGGCTGGGAATCAGCCAGG
CTAATCCGCTGACGGCGCAGAGCTTCAACTACCACCAAGCAGGCGCAAGT
GCCGACCTGCAGCGTGTGACGGTGTCGCGTGACCCCTTAGCCATCGCCGA
GCGTGGCAAGGTTGGAATCCCGTCATCGCACAGTGAGTGCAGCTCGAACG
ATTCCATGGAGGTCTCCGTGGACAGTCACACAGGCGTCCTGACGGGTCTG
AGCAAAGCCACAACCACAGTT
BS14259.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9778-PA | 1761 | CG9778-RA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syt14-RD | 2736 | CG9778-RD | 443..997 | 17..571 | 2775 | 100 | Plus |
Syt14-RC | 3871 | CG9778-RC | 443..997 | 17..571 | 2775 | 100 | Plus |
Syt14-RA | 2736 | CG9778-RA | 443..997 | 17..571 | 2775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4317956..4318288 | 557..225 | 1665 | 100 | Minus |
3R | 32079331 | 3R | 4318348..4318510 | 224..62 | 815 | 100 | Minus |
3R | 32079331 | 3R | 4318581..4318627 | 63..17 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:08:19 has no hits.
BS14259.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:37 Download gff for
BS14259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9778-PA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:25 Download gff for
BS14259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syt14-RA | 433..997 | 7..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:14 Download gff for
BS14259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syt14-RA | 433..997 | 7..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:14 Download gff for
BS14259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4317956..4318288 | 225..557 | 100 | <- | Minus |
3R | 4318348..4318509 | 63..224 | 100 | <- | Minus |
3R | 4318582..4318637 | 7..62 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:25 Download gff for
BS14259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 143678..144010 | 225..557 | 100 | <- | Minus |
arm_3R | 144070..144231 | 63..224 | 100 | <- | Minus |
arm_3R | 144304..144359 | 7..62 | 92 | | Minus |
BS14259.pep Sequence
Translation from 16 to 1776
> BS14259.pep
MIVTSASGLDSTPTLGTIEVTTLLGAFFGVLVLLLLLFLFISRKCCFHYR
HAINCCDERHLAVKCVQKITRKRRYENTSSDSEEDILRRLRWHQQHQLGE
KPGGYGLGISQANPLTAQSFNYHQAGASADLQRVTVSRDPLAIAERGKVG
IPSSHSECSSNDSMEVSVDSHTGVLTGLSKATTTVPHPATAFRNPCGEHR
AKTQALRYQHRVNVAAPPKLDKERDNVLVVPMVNAYSINNNNNSITTSNN
HPSSNNNDDEPLFDTSDLRSIKSDDLLVGVDQKEPAVQRGPIELELSLLY
DAPMRKMTVHVMQAKNLPPLGSGQTTHTQVRMLMLPSKKQKLKTKIRSGE
NPQYMESFLLHRVNPEDVNNMGLRVRLYGCERLRKERLIGEAYVSFATVD
LELETNLWLPLEPRNTSSGLGSTSDLLSLARSESAGSTSSMQHGGVSELL
LGLSYNGVTGRLSVEIIKGSQFRSLSLNKAPDTYVKMVMVSSIGQEISRA
KTSIRRGQPNPLFKETFAFQVALFQLNDVTLMISVYAKRHMKKNEMVGWF
SLGLNSSGSEEVAHWADVCEMPKGEMLARWHVLVDS*
BS14259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syt14-PD | 648 | CG9778-PD | 1..586 | 1..586 | 3018 | 100 | Plus |
Syt14-PC | 586 | CG9778-PC | 1..586 | 1..586 | 3018 | 100 | Plus |
Syt14-PA | 586 | CG9778-PA | 1..586 | 1..586 | 3018 | 100 | Plus |
Syt1-PE | 472 | CG3139-PE | 183..460 | 281..585 | 308 | 27.5 | Plus |
Syt1-PI | 472 | CG3139-PI | 181..460 | 281..585 | 306 | 27.1 | Plus |