Clone Sequence Records
BS14261.3prime Sequence
530 bp (510 high quality bases) assembled on 2006-10-13
> BS14261.3prime
ATGGTCTAGAAAGCTTTCACTGAATGACGCACTTCTTCTGCTTCTTCTGC
GATCGACAGTGGCCGCAGGAGTTCGGGTTCTGACTCTGGTTGCCGTGGTG
CGGGCGATAGGGTTGCGGTCCTCTGGGCACGTTCTGGCCACAGGTCACGT
TGGCGTAGGTGGGCTGGGCCATCGCCTGCTGCTGCTGTTGGTTGGGAGGC
GGGGCCACCGGCGGGGCGCAGTGGCACTCCGTCTTGGCGGGCTTCTCGCG
ACAGGTGCAGCGGGTCTCCAGGGCAGGCGGCTGCTCCCGCGGACCCCGGC
TGCACGTGATGTGGTCCGCCTGAACGGATGGCGGAGGTGGCCGGCTACGG
TTCTGAGTGCACGTGCACTCCACGGTGGGGGCTCCCCGGCTCTGGTAGAG
GCTGCATGCGGCGGGATCGCCCGGCGGCTGCGTCGAGTTGACCTGGCACC
CGCCTGCTCCCTGGCCCCGCGGACCCGGATAGGGACAGCTGTCCGGCTGC
TGCTGCGGCTGGTTGGCGTACGAAGGGGGT
BS14261.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31542-PA | 600 | CG31542-RA | 87..600 | 530..17 | 2520 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34277-RD | 1803 | CG34277-RD | 139..652 | 530..17 | 2540 | 99.6 | Minus |
| CG31542-RC | 1803 | CG31542-RC | 139..652 | 530..17 | 2540 | 99.6 | Minus |
| CG31542-RA | 832 | CG31542-RA | 139..652 | 530..17 | 2540 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:31:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5369737..5370250 | 530..17 | 2540 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-03 06:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1222..1276 | 41..93 | 108 | 69.1 | Plus |
BS14261.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:37 Download gff for
BS14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-PA | 87..600 | 17..530 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:31 Download gff for
BS14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34277-RD | 139..655 | 12..530 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:11 Download gff for
BS14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-RA | 139..655 | 12..530 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:11 Download gff for
BS14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5369737..5370253 | 12..530 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:31 Download gff for
BS14261.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1195459..1195975 | 12..530 | 99 | | Minus |
BS14261.5prime Sequence
494 bp (475 high quality bases) assembled on 2006-10-13
> BS14261.5prime
GAAGTTATCAGTCGACATGTCGTCTCCGTGTGGCAAGTGCAACAACTGTC
CCTGCGGCACCAGCGGCGGAGCCCCACCCCCCCAGCAGCCGCCCCACAGG
CCACCCCCCTCGTACGCCCACCAGCCGCAGCAGCAGCCGGACAGCTGTCC
CTATCCGGGTCCGCGGGGCCAGGGAGCAGGCGGGTGCCAGGTCAACTCGA
CGCAGCCGCCGGGCGATCCCGCCGCATGCAGCCTCTACCAGAGCCGGGGA
GCCCCCACCGTGGAGTGCACGTGCACTCAGAACCGTAGCCGGCCACCTCC
GCCATCCGTTCAGGCGGACCACATCACGTGCAGCCGGGGTCCGCGGGAGC
AGCCGCCTGCCCTGGAGACCCGCTGCACCTGTCGCGAGAAGCCCGCCAAG
ACGGAGTGCCACTGCGCCCCGCCGGTGGCCCCGCCTCCCAACCAACAGCA
GCAGCAGGCGATGGCCCAGCCCACCTACGCCAACGTGACCTGTG
BS14261.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31542-PA | 600 | CG31542-RA | 1..478 | 17..494 | 2390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34277-RD | 1803 | CG34277-RD | 53..530 | 17..494 | 2390 | 100 | Plus |
| CG31542-RC | 1803 | CG31542-RC | 53..530 | 17..494 | 2390 | 100 | Plus |
| CG31542-RA | 832 | CG31542-RA | 53..530 | 17..494 | 2390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5369655..5370128 | 21..494 | 2370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:31:44 has no hits.
BS14261.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:38 Download gff for
BS14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-PA | 1..478 | 17..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:33 Download gff for
BS14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34277-RD | 53..530 | 17..494 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:13 Download gff for
BS14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-RA | 53..530 | 17..494 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:13 Download gff for
BS14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5369652..5370128 | 16..494 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:33 Download gff for
BS14261.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1195374..1195850 | 16..494 | 99 | | Plus |
BS14261.complete Sequence
632 bp assembled on 2006-11-01
GenBank Submission: FJ637624
> BS14261.complete
GAAGTTATCAGTCGACATGTCGTCTCCGTGTGGCAAGTGCAACAACTGTC
CCTGCGGCACCAGCGGCGGAGCCCCACCCCCCCAGCAGCCGCCCCACAGG
CCACCCCCCTCGTACGCCCACCAGCCGCAGCAGCAGCCGGACAGCTGTCC
CTATCCGGGTCCGCGGGGCCAGGGAGCAGGCGGGTGCCAGGTCAACTCGA
CGCAGCCGCCGGGCGATCCCGCCGCATGCAGCCTCTACCAGAGCCGGGGA
GCCCCCACCGTGGAGTGCACGTGCACTCAGAACCGTAGCCGGCCACCTCC
GCCATCCGTTCAGGCGGACCACATCACGTGCAGCCGGGGTCCGCGGGAGC
AGCCGCCTGCCCTGGAGACCCGCTGCACCTGTCGCGAGAAGCCCGCCAAG
ACGGAGTGCCACTGCGCCCCGCCGGTGGCCCCGCCTCCCAACCAACAGCA
GCAGCAGGCGATGGCCCAGCCCACCTACGCCAACGTGACCTGTGGCCAGA
ACGTGCCCAGAGGACCGCAACCCTATCGCCCGCACCACGGCAACCAGAGT
CAGAACCCGAACTCCTGCGGCCACTGTCGATCGCAGAAGAAGCAGAAGAA
GTGCGTCATTCAGTGAAAGCTTTCTAGACCAT
BS14261.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31542-RC | 600 | CG31542-PC | 1..600 | 17..616 | 3000 | 100 | Plus |
| CG31542-RA | 600 | CG31542-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34277-RD | 1803 | CG34277-RD | 53..652 | 17..616 | 3000 | 100 | Plus |
| CG31542-RC | 1803 | CG31542-RC | 53..652 | 17..616 | 3000 | 100 | Plus |
| CG31542-RA | 832 | CG31542-RA | 53..652 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5369655..5370250 | 21..616 | 2980 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1222..1276 | 592..540 | 108 | 69.1 | Minus |
BS14261.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:35 Download gff for
BS14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-RA | 1..600 | 17..616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:49 Download gff for
BS14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-RA | 53..655 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:10 Download gff for
BS14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34277-RD | 53..651 | 17..615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:35 Download gff for
BS14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-RA | 53..655 | 17..621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:37 Download gff for
BS14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-RA | 53..651 | 17..615 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:37 Download gff for
BS14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5369653..5370249 | 17..615 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:10 Download gff for
BS14261.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1195375..1195971 | 17..615 | 99 | | Plus |
BS14261.pep Sequence
Translation from 16 to 615
> BS14261.pep
MSSPCGKCNNCPCGTSGGAPPPQQPPHRPPPSYAHQPQQQPDSCPYPGPR
GQGAGGCQVNSTQPPGDPAACSLYQSRGAPTVECTCTQNRSRPPPPSVQA
DHITCSRGPREQPPALETRCTCREKPAKTECHCAPPVAPPPNQQQQQAMA
QPTYANVTCGQNVPRGPQPYRPHHGNQSQNPNSCGHCRSQKKQKKCVIQ*
BS14261.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31542-PC | 199 | CG31542-PC | 1..199 | 1..199 | 1164 | 100 | Plus |
| CG31542-PA | 199 | CG31542-PA | 1..199 | 1..199 | 1164 | 100 | Plus |
