Clone Sequence Records
BS14264.complete Sequence
1961 bp assembled on 2009-12-07
GenBank Submission: KX804394
> BS14264.complete
GAAGTTATCAGTCGACATGAGCGATAATGAGGATGGTGAGGAGCGGAAGG
CATCGACCTTCGAGTCGATTATAGACAACATGTTCAGCCGGTTGCGGATC
ATCGCAGTGGACGTGGAGAAATTACAGAAGGCCAAGGAGAAGTTAAATAT
TATGCAACGGCGGAACACCTTCTACCATCTTCTAGGCCAGGAGGAAGAAG
TCAGCATGAACCGTGGAAGCGAGATGGCGATTCTTCGATCCAAGTATTCC
TTACATTCGGGTTTCAATCAGAATTGCAGCTCGGCCTCGGAGGAGGAACT
CGACTTCGAGGAGTTAAGCGAGGATCCGTGCAACATATCTTTCGAGGAGG
ATCGCTGGCACGGTTTCTTCAAAGACTTTCAGATCCTGACCACCCCAGTC
GGCACCGATCCCAACGAGAACCGCAAGTGTGTGGAACTGACTTCGATGAC
GAACTGCGATCTCGAGATCAAACACCATCTATTGGGCGGAGTCCGCTGCT
TTATGGTCAACCTTTTCGAGGGCACTCAGCATGACAACCAGAGCCTGATC
GTAAAGCTGCGAGAGGCGGAGATCAGTGTTTCAAAGGAGTTGGGTTTTCC
CGTGACGTCTTCAGTGATGGTGAAGATATCGCCGCGCCACCAGTTCACTG
GCGGATTCAGCACTCAGTTCCGCCAGGAGGGCAAGAAGTGCGTTGAACTT
GTGCAGGGCCAGAAGGTAATCCTGACCGTGGATCGGCAGTACTCGGATCG
GAGCAACGCTGATGTTATATATGTGAATGCCCGCTTTTTGATCGTTGATG
TACACCCCTTGGACTTTATTCTGATTGGCGAGGACATTCAACTGATGGTG
CGGAGCATCCACGCGGACCACCTCAAGGGCTGTGTGGCCAGGGGAGGCAT
GCTGTATGCCCACATGCCTGTCTTATTCCCGGCGAGGTGTCGTCGTTTCC
GGATCTCGTACGAGGAGCTAGAGGACCTTACCTTCGCCCGAGAGGTTGGC
CTGAATGTGGTAGTATCCCATATCGTGGGGACCCCAAAGTACGTGGACAA
CTTGGAGCACGCGATGTCCGCTATGCACTGCGATGGCATGAGACTGTACG
CTAGAGTGGTGCTCAACGAGGTCCAGGGCTGCAAAGGGGAGCTGAACTGG
GCGATCAAACGCTACGACGGGTTCTTGGTGGAACTGGCGGAGCCGGCCAC
TGTTCCGGACATAATGCACCTGTGCCCCGACGCCGAGTGCTTTATGCAGT
TGACATACGCTGCGAAGAAACCCATTATCTTTGATCCGCGGCTTTTGGAT
GAGCAAAAGCTTAGGGTGGACCCCGCGCACTACTATTACACATTCTATTA
TCCGGACAAGTACGTGACCACGTGCCCGCAGCCGAAAGGTACAATCTACT
TCCGCTTACTGCAATCCGCCATCTTCGAGCAGATCAGCCCAACGGCACTG
GCCAATACTCCATACTGCGACCGATCTCACACTGGAGCGGATAGCTTGGC
GCGTTCCGTGGTAACTGCCTCCATTGAAGTCCATGCGGTGGCCATCGTCG
TGATCGGAGTCACCACGCGGATGGTGCAAAAGATCTCCCACTTTCGGCCC
CACGCCCCCATTCTCTTCGTTAGCCACATGCGCTCCGCCGAGGATTACGT
TTCCATTTACCACAACGTGACCATGCTTCCATTCCGCACCAAGTGCATTA
TTGCACATAGGCGGAACGTCTTCCTTAAGGCCATATACGCGTTGGCCTAT
TTGGTGAAGCGAAAGATCGCCAAGCAGAACGATCAGGTGATCCTGGTGTA
CAATTACGAGGATGGCACAAAGTTTCCTGAAAAGTACATCGTGTACAAGC
TGGACAGAACTAACTTTGCGTCGCACATGGCGGAAATCCTGTTCCCTGTG
GACCAGGACCAGATGCAGACCCTCAAGGAAATAGAAAAGACTTAGAAGCT
TTCTAGACCAT
BS14264.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-RA | 1929 | CG11249-PA | 1..1929 | 17..1945 | 9600 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-RA | 2110 | CG11249-RA | 53..1981 | 17..1945 | 9600 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21672927..21674389 | 483..1945 | 7285 | 99.9 | Plus |
| 3L | 28110227 | 3L | 21672191..21672656 | 17..482 | 2315 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-27 01:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 5214..5265 | 281..233 | 117 | 75 | Minus |
BS14264.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:32 Download gff for
BS14264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 53..1981 | 17..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:02 Download gff for
BS14264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 53..1981 | 17..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:38 Download gff for
BS14264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 53..1981 | 17..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:18 Download gff for
BS14264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 53..1981 | 17..1945 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:18 Download gff for
BS14264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21672191..21672656 | 17..482 | 99 | -> | Plus |
| 3L | 21672927..21674389 | 483..1945 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:02 Download gff for
BS14264.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21665291..21665756 | 17..482 | 99 | -> | Plus |
| arm_3L | 21666027..21667489 | 483..1945 | 99 | | Plus |
BS14264.3prime Sequence
634 bp (549 high quality bases) assembled on 2006-10-13
> BS14264.3prime
ATGGTCTAGAAAGCTTCTAAGTCTTTTCTATTTCCTTGAGGGTCTGCATC
TGGTCCTGGTCCACAGGGAACAGGATTTCCGCCATGTGCGACGCAAAGTT
AGTTCTGTCCAGCTTGTACACGATGTACTTTTCAGGAAACTTTGTGCCAT
CCTCGTAATTGTACACCAGGATCACCTGATCGTTCTGCTTGGCGATCTTT
CGCTTCACCAAATAGGCCAACGCGTATATGGCCTTAAGGAAGACGTTCCG
CCTATGTGCAATAATGCACTTGGTGCGGAATGGAAGCATGGTCACGTTGT
GGTAAATGGAAACGTAATCCTCGGCGGAGCGCATGTGGCTAACGAAGAGA
ATGGGGGCGTGGGGCCGAAAGTGGGAGATCTTTTGCACCATCCGCGTGGT
GACTCCGATCACGACGATGGCCACCGCATGGACTTCAATGGAGGCAGTTA
CCACGGAACGCGCCAAGCTATCCGCTCCAGTGTGAGATCGGTCGCAGTAT
GGAGTATTGGCCAGTGCCGTTGGGCTGATCTGCTCGAAGATGGCGGATTG
CAGTAAGCGGAAGTAGATTGTACCTTTCGGCTGCGGGCACGTGGTCACGT
ACTTGTCCGGATAATAGAATGTGTAAAAGTAGTG
BS14264.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-PA | 1929 | CG11249-RA | 1312..1929 | 634..17 | 3040 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-RA | 2110 | CG11249-RA | 1364..1981 | 634..17 | 3060 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21673772..21674389 | 634..17 | 3060 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 19:05:14 has no hits.
BS14264.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:39 Download gff for
BS14264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-PA | 1312..1929 | 17..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:09:51 Download gff for
BS14264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 1364..1981 | 17..634 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:02:55 Download gff for
BS14264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 1364..1981 | 17..634 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:02:55 Download gff for
BS14264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21673772..21674389 | 17..634 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:09:51 Download gff for
BS14264.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21666872..21667489 | 17..634 | 99 | | Minus |
BS14264.5prime Sequence
536 bp (534 high quality bases) assembled on 2006-10-13
> BS14264.5prime
GAAGTTATCAGTCGACATGAGCGATAATGAGGATGGTGAGGAGCGGAAGG
CATCGACCTTCGAGTCGATTATAGACAACATGTTCAGCCGGTTGCGGATC
ATCGCAGTGGACGTGGAGAAATTACAGAAGGCCAAGGAGAAGTTAAATAT
TATGCAACGGCGGAACACCTTCTACCATCTTCTAGGCCAGGAGGAAGAAG
TCAGCATGAACCGTGGAAGCGAGATGGCGATTCTTCGATCCAAGTATTCC
TTACATTCGGGTTTCAATCAGAATTGCAGCTCGGCCTCGGAGGAGGAACT
CGACTTCGAGGAGTTAAGCGAGGATCCGTGCAACATATCTTTCGAGGAGG
ATCGCTGGCACGGTTTCTTCAAAGACTTTCAGATCCTGACCACCCCAGTC
GGCACCGATCCCAACGAGAACCGCAAGTGTGTGGAACTGACTTCGATGAC
GAACTGCGATCTCGAGATCAAACACCATCTATTGGGCGGAGTCCGCTGCT
TTATGGTCAACCTTTTCGAGGGCACTCAGCATGACA
BS14264.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-PA | 1929 | CG11249-RA | 1..520 | 17..536 | 2575 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:29:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-RA | 2110 | CG11249-RA | 53..572 | 17..536 | 2585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21672191..21672656 | 17..482 | 2315 | 99.8 | Plus |
| 3L | 28110227 | 3L | 21672927..21672980 | 483..536 | 270 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 5214..5265 | 281..233 | 117 | 75 | Minus |
BS14264.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:39 Download gff for
BS14264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-PA | 1..519 | 17..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:09:17 Download gff for
BS14264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 48..571 | 9..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:13:37 Download gff for
BS14264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 48..571 | 9..535 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:13:37 Download gff for
BS14264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21672186..21672656 | 9..482 | 99 | -> | Plus |
| 3L | 21672927..21672979 | 483..535 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:09:17 Download gff for
BS14264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21665286..21665756 | 9..482 | 99 | -> | Plus |
| arm_3L | 21666027..21666079 | 483..535 | 100 | | Plus |
BS14264.pep Sequence
Translation from 16 to 1944
> BS14264.pep
MSDNEDGEERKASTFESIIDNMFSRLRIIAVDVEKLQKAKEKLNIMQRRN
TFYHLLGQEEEVSMNRGSEMAILRSKYSLHSGFNQNCSSASEEELDFEEL
SEDPCNISFEEDRWHGFFKDFQILTTPVGTDPNENRKCVELTSMTNCDLE
IKHHLLGGVRCFMVNLFEGTQHDNQSLIVKLREAEISVSKELGFPVTSSV
MVKISPRHQFTGGFSTQFRQEGKKCVELVQGQKVILTVDRQYSDRSNADV
IYVNARFLIVDVHPLDFILIGEDIQLMVRSIHADHLKGCVARGGMLYAHM
PVLFPARCRRFRISYEELEDLTFAREVGLNVVVSHIVGTPKYVDNLEHAM
SAMHCDGMRLYARVVLNEVQGCKGELNWAIKRYDGFLVELAEPATVPDIM
HLCPDAECFMQLTYAAKKPIIFDPRLLDEQKLRVDPAHYYYTFYYPDKYV
TTCPQPKGTIYFRLLQSAIFEQISPTALANTPYCDRSHTGADSLARSVVT
ASIEVHAVAIVVIGVTTRMVQKISHFRPHAPILFVSHMRSAEDYVSIYHN
VTMLPFRTKCIIAHRRNVFLKAIYALAYLVKRKIAKQNDQVILVYNYEDG
TKFPEKYIVYKLDRTNFASHMAEILFPVDQDQMQTLKEIEKT*
BS14264.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:55:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-PA | 642 | CG11249-PA | 1..642 | 1..642 | 3350 | 100 | Plus |
