Clone Sequence Records
BS14265.3prime Sequence
569 bp (537 high quality bases) assembled on 2006-10-13
> BS14265.3prime
ATGGTCTAGAAAGCTTTCAGAGAATTTGTGGGTTCACCGACCATCTGATT
ACTGAATCCTTTACAGTTAGCTCGTGTCGGTTGTCGGGCAGAGGAGTATG
GTAATCTTCCTTAGTAATACTTATTATAGACCTCTCACTGCGACGTTGGT
GTCTAGAGATCCTCTTCAGTTCCCTTTCGTTGTCCTGGTCTAATTCCTGA
CCGGTGCTTATGCCAGACATCTCACTGGGACGTTGGAGTCTAACTATGGA
CTTCTTTCGATCCAGTAAATTGCTCTCGGCCTCGGCCATCTTTTCGCATC
GCCTGGCACACCGCTTCTTCTTGGCCTGATTGACAAAGGTGGCGTTAAAG
TCCTCTTTCACCTGCGGATACTCGTGGGCAGGACAACGGCGCGGCATACG
CAGGCACTTGCAGAAGCTCATGTTGTACTTGAAGTAATTTGCGAAATCCT
CATTGGGTTCCAATAGCTTCTGATAGTACTCGATGCTGTTCAAGTCCAAG
GGATCCAACATGTGGGCAGCGCAGTCGAACTGTACGTGTCCACTGTAGAA
GTAGGCGAAGAGCTCCTCC
BS14265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30393-PA | 1065 | CG30393-RA | 513..1065 | 569..17 | 2765 | 100 | Minus |
CG30391-PA | 1017 | CG30391-RA | 513..546 | 569..536 | 145 | 97 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:31:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30393-RA | 1216 | CG30393-RA | 577..1132 | 569..14 | 2780 | 100 | Minus |
CG30391-RA | 1538 | CG30391-RA | 610..780 | 569..399 | 330 | 80.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21266448..21267003 | 14..569 | 2780 | 100 | Plus |
2R | 25286936 | 2R | 21265563..21265733 | 399..569 | 330 | 79.5 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:31:55 has no hits.
BS14265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:40 Download gff for
BS14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-PA | 513..1065 | 17..569 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:35 Download gff for
BS14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-RA | 577..1132 | 14..569 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:14 Download gff for
BS14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-RA | 577..1132 | 14..569 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:14 Download gff for
BS14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21266448..21267003 | 14..569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:35 Download gff for
BS14265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17153953..17154508 | 14..569 | 100 | | Plus |
BS14265.5prime Sequence
628 bp (556 high quality bases) assembled on 2006-10-13
> BS14265.5prime
GAAGTTATCAGTCGACATGGAAACAACCGCTCAGCTGCAGCAATTGAAAC
CCCAACAGAGCGTCATGTCGCACGTCACGGTCACCGAGAGTGATGCCGAG
TTTGCGATCTTGAATCTGGATTGCAACGAAGGTTTGGAGAGCTCGGTGAC
CAAGATTCTGGTGGCCATCGAAGAGATGTTCTGCAGTTACTTTGAGGATC
TCAAGAAGGAGCTGGAACTGCAGAAGATGGCGGCACTGACCTTGAATCAG
CTGACCCAACGTTACAGGATCAACACGAAGGTGGACACGAGCTGCACGTG
TCCGCAGATCTATGAGATCGAATCGGATGATGCGATCATTAACAAATACT
ACATCTACTACCAGGTGATAGCCTGTTCCAACAATAACCAGGGTTGGGTC
ATCCACAACATGCGCCCCTATGTTCTCCTCTTTCGTCGAGAGTGCGCCAA
GTTGAATCTGAACGAGGATAGTCCCTTCATCATGGGTGACGCTTTCCACA
AGCCAATCAAGTTCTTCATCGACTTGGTGGAGGAGCTCTTCGCCTACTTC
TACAGTGGACACGTACAGTTCGACTGCGCTGCCCACATGTTGGGATCCCT
TGAACTTGAAAAGCATCAAGTACAATCA
BS14265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30393-PA | 1065 | CG30393-RA | 1..577 | 17..593 | 2885 | 100 | Plus |
CG30391-PA | 1017 | CG30391-RA | 266..389 | 282..405 | 270 | 88.7 | Plus |
CG30391-PA | 1017 | CG30391-RA | 478..546 | 494..562 | 195 | 91.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30393-RA | 1216 | CG30393-RA | 64..675 | 16..628 | 2980 | 99.2 | Plus |
CG30391-RA | 1538 | CG30391-RA | 227..682 | 146..602 | 895 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21266905..21267516 | 628..16 | 2955 | 99.2 | Minus |
2R | 25286936 | 2R | 21265683..21266116 | 579..146 | 865 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:25:00 has no hits.
BS14265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:40 Download gff for
BS14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-PA | 1..610 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:22 Download gff for
BS14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-RA | 57..674 | 10..627 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:09 Download gff for
BS14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-RA | 57..674 | 10..627 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:09 Download gff for
BS14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21266906..21267523 | 10..627 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:22 Download gff for
BS14265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17154411..17155028 | 10..627 | 98 | | Minus |
BS14265.complete Sequence
1097 bp assembled on 2006-11-01
GenBank Submission: FJ637625
> BS14265.complete
GAAGTTATCAGTCGACATGGAAACAACCGCTCAGCTGCAGCAATTGAAAC
CCCAACAGAGCGTCATGTCGCACGTCACGGTCACCGAGAGTGATGCCGAG
TTTGCGATCTTGAATCTGGATTGCAACGAAGGTTTGGAGAGCTCGGTGAC
CAAGATTCTGGTGGCCATCGAAGAGATGTTCTGCAGTTACTTTGAGGATC
TCAAGAAGGAGCTGGAACTGCAGAAGATGGCGGCACTGACCTTGAATCAG
CTGACCCAACGTTACAGGATCAACACGAAGGTGGACACGAGCTGCACGTG
TCCGCAGATCTATGAGATCGAATCGGATGATGCGATCATTAACAAATACT
ACATCTACTACCAGGTGATAGCCTGTTCCAACAATAACCAGGGTTGGGTC
ATCCACAACATGCGCCCCTATGTTCTCCTCTTTCGTCGAGAGTGCGCCAA
GTTGAATCTGAACGAGGATAGTCCCTTCATCATGGGTGACGCTTTCCACA
AGCCAATCAAGTTCTTCATCGACTTGGTGGAGGAGCTCTTCGCCTACTTC
TACAGTGGACACGTACAGTTCGACTGCGCTGCCCACATGTTGGATCCCTT
GGACTTGAACAGCATCGAGTACTATCAGAAGCTATTGGAACCCAATGAGG
ATTTCGCAAATTACTTCAAGTACAACATGAGCTTCTGCAAGTGCCTGCGT
ATGCCGCGCCGTTGTCCTGCCCACGAGTATCCGCAGGTGAAAGAGGACTT
TAACGCCACCTTTGTCAATCAGGCCAAGAAGAAGCGGTGTGCCAGGCGAT
GCGAAAAGATGGCCGAGGCCGAGAGCAATTTACTGGATCGAAAGAAGTCC
ATAGTTAGACTCCAACGTCCCAGTGAGATGTCTGGCATAAGCACCGGTCA
GGAATTAGACCAGGACAACGAAAGGGAACTGAAGAGGATCTCTAGACACC
AACGTCGCAGTGAGAGGTCTATAATAAGTATTACTAAGGAAGATTACCAT
ACTCCTCTGCCCGACAACCGACACGAGCTAACTGTAAAGGATTCAGTAAT
CAGATGGTCGGTGAACCCACAAATTCTCTGAAAGCTTTCTAGACCAT
BS14265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30393-RA | 1065 | CG30393-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
CG30391-RA | 1017 | CG30391-PA | 130..683 | 146..699 | 1030 | 79.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30393-RA | 1216 | CG30393-RA | 64..1132 | 16..1084 | 5345 | 100 | Plus |
CG30391-RA | 1538 | CG30391-RA | 227..780 | 146..699 | 1030 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:20:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21266448..21267516 | 1084..16 | 5345 | 100 | Minus |
2R | 25286936 | 2R | 21265563..21266116 | 699..146 | 1030 | 79.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:20:38 has no hits.
BS14265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:36 Download gff for
BS14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-RA | 1..1065 | 17..1081 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:51 Download gff for
BS14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-RA | 57..1132 | 10..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:42 Download gff for
BS14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-RA | 65..1128 | 17..1080 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:36 Download gff for
BS14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-RA | 57..1132 | 10..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:22 Download gff for
BS14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30393-RA | 65..1128 | 17..1080 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:22 Download gff for
BS14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21266452..21267515 | 17..1080 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:42 Download gff for
BS14265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17153957..17155020 | 17..1080 | 100 | | Minus |
BS14265.pep Sequence
Translation from 16 to 1080
> BS14265.pep
METTAQLQQLKPQQSVMSHVTVTESDAEFAILNLDCNEGLESSVTKILVA
IEEMFCSYFEDLKKELELQKMAALTLNQLTQRYRINTKVDTSCTCPQIYE
IESDDAIINKYYIYYQVIACSNNNQGWVIHNMRPYVLLFRRECAKLNLNE
DSPFIMGDAFHKPIKFFIDLVEELFAYFYSGHVQFDCAAHMLDPLDLNSI
EYYQKLLEPNEDFANYFKYNMSFCKCLRMPRRCPAHEYPQVKEDFNATFV
NQAKKKRCARRCEKMAEAESNLLDRKKSIVRLQRPSEMSGISTGQELDQD
NERELKRISRHQRRSERSIISITKEDYHTPLPDNRHELTVKDSVIRWSVN
PQIL*
BS14265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30393-PA | 354 | CG30393-PA | 1..354 | 1..354 | 1864 | 100 | Plus |
CG30391-PA | 338 | CG30391-PA | 1..333 | 1..328 | 927 | 55.2 | Plus |
CG31910-PA | 262 | CG31910-PA | 44..242 | 39..234 | 300 | 31.7 | Plus |