Clone BS14268 Report

Search the DGRC for BS14268

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG3809-RA
Protein status:BS14268.pep: full length peptide match
Sequenced Size:1223

Clone Sequence Records

BS14268.5prime Sequence

486 bp (428 high quality bases) assembled on 2006-10-13

> BS14268.5prime
GAAGTTATCAGTCGACATGTCCAGGCGGGTTTTTGGACTCAGTATAAAAT
CATTCCGATTGTTCCGAAGAACTCCGATCCATCCCCCAGCATTCCAGCAT
TTTTCTGGTGGTGTCTTTCGAACTTCCTTTAGGAGTTTCTGCGATTGTCA
GGAACACCGAAGAATGGATCTACCAGAGGGAATACTTATGGGCTTTGGCA
ACCCCCTGCTGGACATCACCTGCACCGTTGAGGATAATGTGATCCTGGAA
AAGTACGGATTGGAAGCAAATGCTGCGATCATTGCTGATGAAAAGCACGA
TGCCCTGTTCGATGAGTTGATGAACATGGAAAATGTCATCTATTCGGCGG
GTGGAGCCTGTCAGAACTCGATGCGGATCTTCCAGTGGATCGTGCAGACT
CCATTTCGAGCTGTGTTCATAGGGTCAGTGGGCAAGGATAAGCTAGGTGA
TCGCATCGAAAAGAGGGCCAAATCCGAATGGCTGCT

BS14268.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG3809-PA 1191 CG3809-RA 1..461 17..477 2130 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG3809-RA 1427 CG3809-RA 146..606 17..477 2200 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12198086..12198546 17..477 2200 98.5 Plus
Blast to na_te.dros performed on 2015-02-12 11:58:24 has no hits.

BS14268.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:42 Download gff for BS14268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3809-PA 1..470 17..486 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:48 Download gff for BS14268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 144..615 14..486 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:06:50 Download gff for BS14268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 144..615 14..486 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:06:50 Download gff for BS14268.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12198084..12198555 14..486 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:48 Download gff for BS14268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8023806..8024277 14..486 97   Plus

BS14268.complete Sequence

1223 bp assembled on 2009-08-24

GenBank Submission: KX804359

> BS14268.complete
GAAGTTATCAGTCGACATGTCCAGGCGGGTTTTTGGACTCAGTATAAAAT
CATTCCGATTGTTCCGAAGAACTCCGATCCATCCCCCAGCATTCCAGCAT
TTTTCTGGTGGTGTCTTTCGAACTTCCTTTAGGAGTTTCTGCGATTGTCA
GGAACACCGAAGAATGGATCTACCAGAGGGAATACTTATGGGCTTTGGCA
ACCCCCTGCTGGACATCACCTGCACCGTTGAGGATAATGTGATCCTGGAA
AAGTACGGATTGGAAGCAAATGCTGCGATCATTGCTGATGAAAAGCACGA
TGCCCTGTTCGATGAGTTGATGAACATGGAAAATGTCATCTATTCGGCGG
GTGGAGCCTGTCAGAACTCGATGCGGATCTTCCAGTGGATCGTGCAGACT
CCATTTCGAGCTGTGTTCATAGGGTCAGTGGGCAAGGATAAGCTAGGTGA
TCGCATCGAAAAGAGGGCCAAATCCGATGGCCTGCTAACACTTTATCAGC
TGAAGGAAGAGCTGCCGACAGGCTCTTGTGCTGTGATCATCAACGGTCCA
AACCGCTCATTAGTGGCCAACTTGGGCGCTGCCTCTCTCTTCAGCGACGA
CTGGATTGACGAGGATGATAACATCTGCGCCTTGGATCGCGCCGAGTACT
TCTACTTTACGGGCTTCTTTCTGGCCGTTTGTCCACCTGCCGTGGAGCGG
GTAGCTAGGATGTGCTGCGAGACCAATCGAATTATGATCCTCAACTTCAG
CGCCGTGTTTGTGCTGCAGATGCAAAAGGAAGCCTTGGGCAATATCCTGC
AGTACGTGGATATAATCATCTGCAATAAGGAAGAGGCCATTGCATTTAGC
GACACCAACGACTGGAAGACGAAGAATATCTTTGAGATCGGATCTAGGCT
GCAGCAAATGCCCAAGGAAAATACCCGACCAAGACTAGTAATGATTACGG
ATGCGGTGTGTCCTGTTCTCGTCTTCCAGGATAACGATCGCGTTCTGGAA
TACCCTGTTCCACCCGTAAAGCAGGGCGAGATTTTCGACACCAATGGTTG
TGGCGACGCCTTCGTCGGCGGATTCCTGGCCATGTACGTCCAAAGGATGC
CCCTGGATTACTGCATCCGAACGGGGATTTTCGCATCCCAGCAGGTCCTA
CACGTGGTCGGTGTTCAGATCGATAAGCTGCCAAAGTTTAGCGAGAAATG
CATATGAAAGCTTTCTAGACCAT

BS14268.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3809-RA 1191 CG3809-PA 1..1191 17..1207 5835 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3809-RA 1427 CG3809-RA 146..1337 17..1208 5840 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12198694..12199383 519..1208 3435 99.9 Plus
3R 32079331 3R 12198086..12198591 17..522 2425 98.6 Plus
Blast to na_te.dros performed on 2014-11-28 01:36:59 has no hits.

BS14268.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:44 Download gff for BS14268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 146..1335 17..1206 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:48 Download gff for BS14268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 146..1335 17..1206 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:48 Download gff for BS14268.complete
Subject Subject Range Query Range Percent Splice Strand
CG3809-RA 146..1335 17..1206 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:48 Download gff for BS14268.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12198086..12198590 17..521 98 -> Plus
3R 12198697..12199381 522..1206 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:48 Download gff for BS14268.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8023808..8024312 17..521 98 -> Plus
arm_3R 8024419..8025103 522..1206 99   Plus

BS14268.pep Sequence

Translation from 16 to 1206

> BS14268.pep
MSRRVFGLSIKSFRLFRRTPIHPPAFQHFSGGVFRTSFRSFCDCQEHRRM
DLPEGILMGFGNPLLDITCTVEDNVILEKYGLEANAAIIADEKHDALFDE
LMNMENVIYSAGGACQNSMRIFQWIVQTPFRAVFIGSVGKDKLGDRIEKR
AKSDGLLTLYQLKEELPTGSCAVIINGPNRSLVANLGAASLFSDDWIDED
DNICALDRAEYFYFTGFFLAVCPPAVERVARMCCETNRIMILNFSAVFVL
QMQKEALGNILQYVDIIICNKEEAIAFSDTNDWKTKNIFEIGSRLQQMPK
ENTRPRLVMITDAVCPVLVFQDNDRVLEYPVPPVKQGEIFDTNGCGDAFV
GGFLAMYVQRMPLDYCIRTGIFASQQVLHVVGVQIDKLPKFSEKCI*

BS14268.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG3809-PA 396 CG3809-PA 1..396 1..396 2083 100 Plus
AdenoK-PC 345 CG11255-PC 5..345 52..393 710 44 Plus
AdenoK-PA 345 CG11255-PA 5..345 52..393 710 44 Plus
AdenoK-PB 345 CG11255-PB 7..345 54..393 707 44 Plus
Ady43A-PA 366 CG1851-PA 34..365 60..385 272 25 Plus