Clone Sequence Records
BS14268.5prime Sequence
486 bp (428 high quality bases) assembled on 2006-10-13
> BS14268.5prime
GAAGTTATCAGTCGACATGTCCAGGCGGGTTTTTGGACTCAGTATAAAAT
CATTCCGATTGTTCCGAAGAACTCCGATCCATCCCCCAGCATTCCAGCAT
TTTTCTGGTGGTGTCTTTCGAACTTCCTTTAGGAGTTTCTGCGATTGTCA
GGAACACCGAAGAATGGATCTACCAGAGGGAATACTTATGGGCTTTGGCA
ACCCCCTGCTGGACATCACCTGCACCGTTGAGGATAATGTGATCCTGGAA
AAGTACGGATTGGAAGCAAATGCTGCGATCATTGCTGATGAAAAGCACGA
TGCCCTGTTCGATGAGTTGATGAACATGGAAAATGTCATCTATTCGGCGG
GTGGAGCCTGTCAGAACTCGATGCGGATCTTCCAGTGGATCGTGCAGACT
CCATTTCGAGCTGTGTTCATAGGGTCAGTGGGCAAGGATAAGCTAGGTGA
TCGCATCGAAAAGAGGGCCAAATCCGAATGGCTGCT
BS14268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:58:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3809-PA | 1191 | CG3809-RA | 1..461 | 17..477 | 2130 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3809-RA | 1427 | CG3809-RA | 146..606 | 17..477 | 2200 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12198086..12198546 | 17..477 | 2200 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:58:24 has no hits.
BS14268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:42 Download gff for
BS14268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3809-PA | 1..470 | 17..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:48 Download gff for
BS14268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3809-RA | 144..615 | 14..486 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:06:50 Download gff for
BS14268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3809-RA | 144..615 | 14..486 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:06:50 Download gff for
BS14268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12198084..12198555 | 14..486 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:48 Download gff for
BS14268.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8023806..8024277 | 14..486 | 97 | | Plus |
BS14268.complete Sequence
1223 bp assembled on 2009-08-24
GenBank Submission: KX804359
> BS14268.complete
GAAGTTATCAGTCGACATGTCCAGGCGGGTTTTTGGACTCAGTATAAAAT
CATTCCGATTGTTCCGAAGAACTCCGATCCATCCCCCAGCATTCCAGCAT
TTTTCTGGTGGTGTCTTTCGAACTTCCTTTAGGAGTTTCTGCGATTGTCA
GGAACACCGAAGAATGGATCTACCAGAGGGAATACTTATGGGCTTTGGCA
ACCCCCTGCTGGACATCACCTGCACCGTTGAGGATAATGTGATCCTGGAA
AAGTACGGATTGGAAGCAAATGCTGCGATCATTGCTGATGAAAAGCACGA
TGCCCTGTTCGATGAGTTGATGAACATGGAAAATGTCATCTATTCGGCGG
GTGGAGCCTGTCAGAACTCGATGCGGATCTTCCAGTGGATCGTGCAGACT
CCATTTCGAGCTGTGTTCATAGGGTCAGTGGGCAAGGATAAGCTAGGTGA
TCGCATCGAAAAGAGGGCCAAATCCGATGGCCTGCTAACACTTTATCAGC
TGAAGGAAGAGCTGCCGACAGGCTCTTGTGCTGTGATCATCAACGGTCCA
AACCGCTCATTAGTGGCCAACTTGGGCGCTGCCTCTCTCTTCAGCGACGA
CTGGATTGACGAGGATGATAACATCTGCGCCTTGGATCGCGCCGAGTACT
TCTACTTTACGGGCTTCTTTCTGGCCGTTTGTCCACCTGCCGTGGAGCGG
GTAGCTAGGATGTGCTGCGAGACCAATCGAATTATGATCCTCAACTTCAG
CGCCGTGTTTGTGCTGCAGATGCAAAAGGAAGCCTTGGGCAATATCCTGC
AGTACGTGGATATAATCATCTGCAATAAGGAAGAGGCCATTGCATTTAGC
GACACCAACGACTGGAAGACGAAGAATATCTTTGAGATCGGATCTAGGCT
GCAGCAAATGCCCAAGGAAAATACCCGACCAAGACTAGTAATGATTACGG
ATGCGGTGTGTCCTGTTCTCGTCTTCCAGGATAACGATCGCGTTCTGGAA
TACCCTGTTCCACCCGTAAAGCAGGGCGAGATTTTCGACACCAATGGTTG
TGGCGACGCCTTCGTCGGCGGATTCCTGGCCATGTACGTCCAAAGGATGC
CCCTGGATTACTGCATCCGAACGGGGATTTTCGCATCCCAGCAGGTCCTA
CACGTGGTCGGTGTTCAGATCGATAAGCTGCCAAAGTTTAGCGAGAAATG
CATATGAAAGCTTTCTAGACCAT
BS14268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3809-RA | 1191 | CG3809-PA | 1..1191 | 17..1207 | 5835 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3809-RA | 1427 | CG3809-RA | 146..1337 | 17..1208 | 5840 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12198694..12199383 | 519..1208 | 3435 | 99.9 | Plus |
3R | 32079331 | 3R | 12198086..12198591 | 17..522 | 2425 | 98.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:36:59 has no hits.
BS14268.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:44 Download gff for
BS14268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3809-RA | 146..1335 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:48 Download gff for
BS14268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3809-RA | 146..1335 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:48 Download gff for
BS14268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3809-RA | 146..1335 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:48 Download gff for
BS14268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12198086..12198590 | 17..521 | 98 | -> | Plus |
3R | 12198697..12199381 | 522..1206 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:48 Download gff for
BS14268.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8023808..8024312 | 17..521 | 98 | -> | Plus |
arm_3R | 8024419..8025103 | 522..1206 | 99 | | Plus |
BS14268.pep Sequence
Translation from 16 to 1206
> BS14268.pep
MSRRVFGLSIKSFRLFRRTPIHPPAFQHFSGGVFRTSFRSFCDCQEHRRM
DLPEGILMGFGNPLLDITCTVEDNVILEKYGLEANAAIIADEKHDALFDE
LMNMENVIYSAGGACQNSMRIFQWIVQTPFRAVFIGSVGKDKLGDRIEKR
AKSDGLLTLYQLKEELPTGSCAVIINGPNRSLVANLGAASLFSDDWIDED
DNICALDRAEYFYFTGFFLAVCPPAVERVARMCCETNRIMILNFSAVFVL
QMQKEALGNILQYVDIIICNKEEAIAFSDTNDWKTKNIFEIGSRLQQMPK
ENTRPRLVMITDAVCPVLVFQDNDRVLEYPVPPVKQGEIFDTNGCGDAFV
GGFLAMYVQRMPLDYCIRTGIFASQQVLHVVGVQIDKLPKFSEKCI*
BS14268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3809-PA | 396 | CG3809-PA | 1..396 | 1..396 | 2083 | 100 | Plus |
AdenoK-PC | 345 | CG11255-PC | 5..345 | 52..393 | 710 | 44 | Plus |
AdenoK-PA | 345 | CG11255-PA | 5..345 | 52..393 | 710 | 44 | Plus |
AdenoK-PB | 345 | CG11255-PB | 7..345 | 54..393 | 707 | 44 | Plus |
Ady43A-PA | 366 | CG1851-PA | 34..365 | 60..385 | 272 | 25 | Plus |