Clone BS14270 Report

Search the DGRC for BS14270

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptTim17b1-RA
Protein status:BS14270.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14270.3prime Sequence

476 bp (462 high quality bases) assembled on 2006-10-13

> BS14270.3prime
ATGGTCTAGAAAGCTTCTACAATGCCGAAGAGTCAATCTCTCCATAAGTC
GCTGCGAGTGGAGAAACGCCCTTTTGCTGCCGTAAAAGCTCCTGCTTATA
CCGTTGCTGCCGCTCCACGGGCGACACCTGGCGGTAGGAATCCGCCGAAT
AATGGGACACCACAATGCCCACGCCCTCTATTAGGGCCAATAGAGCCCCG
CCCACCAAGGCACTACTGAGCATGGAGGTTAGTCCAGTTCTAGCAGCAAG
AATGCCCCCGGTGGTTGCTCCACTAATTATGGCGTTCCACGGGTCCTCCT
TCTTCCGGAAGTAAACCAGTGAGCAGTCGATGGCGCTGAAGGTAGCGCCC
CACACCGCAAAGTTACCACCCACCAGGCCGGATCGAGCCCGTACCGCCGC
CAATCCTCCGCTCAATCGGTATCCCAGGCCGGAGGGGGCGTTTCGAAAGC
CCTTGATCGCCTGGAAGGCTCCTCCG

BS14270.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1158-PA 540 Tim17b1-RA 81..540 476..17 2300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-RA 785 CG1158-RA 128..589 476..15 2310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5300272..5300514 476..234 1215 100 Minus
3R 32079331 3R 5300704..5300901 235..38 990 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:25:12 has no hits.

BS14270.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:43 Download gff for BS14270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1158-PA 81..540 17..476 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:23 Download gff for BS14270.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 128..593 8..476 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:44 Download gff for BS14270.3prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 128..593 8..476 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:44 Download gff for BS14270.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5300705..5300901 38..234 100 -> Minus
3R 5300272..5300513 235..476 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:23 Download gff for BS14270.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1126427..1126623 38..234 100 -> Minus
arm_3R 1125994..1126235 235..476 100 -> Minus

BS14270.5prime Sequence

543 bp (498 high quality bases) assembled on 2006-10-13

> BS14270.5prime
GAAGTTATCAGTCGACATGGCGGAGTACGGTCGGGAGCCTTGTCCCTTTC
GCATTGTCGAGGATTGTGGTGGAGCCTTCGCAATGGGCGCCTTGGGCGGA
GGAGCCTTCCAGGCGATCAAGGGCTTTCGAAACGCCCCCTCCGGCCTGGG
ATACCGATTGAGCGGAGGATTGGCGGCGGTACGGGCTCGATCCGGCCTGG
TGGGTGGTAACTTTGCGGTGTGGGGCGCTACCTTCAGCGCCATCGACTGC
TCACTGGTTTACTTCCGGAAGAAGGAGGACCCGTGGAACGCCATAATTAG
TGGAGCAACCACCGGGGGCATTCTTGCTGCTAGAACTGGACTAACCTCCA
TGCTCAGTAGTGCCTTGGTGGGCGGGGCTCTATTGGCCCTAATAGAGGGC
GTGGGCATTGTGGTGTCCCATTATTCGGCGGATTCCTACCGCCAGGTGTC
GCCCGTGGAGCGGCAGCAACGGTATAAGCAGGAGCTTTTACGGCAGCAAA
AGGGCGTTTCTCCACTCGCAGCGACTTATGGAGAGATTGACTC

BS14270.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1158-PA 540 Tim17b1-RA 1..527 17..543 2635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-RA 785 CG1158-RA 45..574 14..543 2650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5300189..5300514 14..339 1630 100 Plus
3R 32079331 3R 5300704..5300901 338..535 990 100 Plus
Blast to na_te.dros performed on 2015-01-30 04:56:24 has no hits.

BS14270.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:44 Download gff for BS14270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1158-PA 1..527 17..543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:34:13 Download gff for BS14270.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 38..574 7..543 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:50:11 Download gff for BS14270.5prime
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 38..574 7..543 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:50:11 Download gff for BS14270.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5300182..5300513 7..338 99 -> Plus
3R 5300705..5300901 339..535 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:34:13 Download gff for BS14270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1125904..1126235 7..338 99 -> Plus
arm_3R 1126427..1126623 339..535 100   Plus

BS14270.complete Sequence

572 bp assembled on 2006-11-01

GenBank Submission: FJ637626

> BS14270.complete
GAAGTTATCAGTCGACATGGCGGAGTACGGTCGGGAGCCTTGTCCCTTTC
GCATTGTCGAGGATTGTGGTGGAGCCTTCGCAATGGGCGCCTTGGGCGGA
GGAGCCTTCCAGGCGATCAAGGGCTTTCGAAACGCCCCCTCCGGCCTGGG
ATACCGATTGAGCGGAGGATTGGCGGCGGTACGGGCTCGATCCGGCCTGG
TGGGTGGTAACTTTGCGGTGTGGGGCGCTACCTTCAGCGCCATCGACTGC
TCACTGGTTTACTTCCGGAAGAAGGAGGACCCGTGGAACGCCATAATTAG
TGGAGCAACCACCGGGGGCATTCTTGCTGCTAGAACTGGACTAACCTCCA
TGCTCAGTAGTGCCTTGGTGGGCGGGGCTCTATTGGCCCTAATAGAGGGC
GTGGGCATTGTGGTGTCCCATTATTCGGCGGATTCCTACCGCCAGGTGTC
GCCCGTGGAGCGGCAGCAACGGTATAAGCAGGAGCTTTTACGGCAGCAAA
AGGGCGTTTCTCCACTCGCAGCGACTTATGGAGAGATTGACTCTTCGGCA
TTGTAGAAGCTTTCTAGACCAT

BS14270.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-RA 540 CG1158-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-RA 785 CG1158-RA 45..589 14..558 2725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5300189..5300514 14..339 1630 100 Plus
3R 32079331 3R 5300704..5300901 338..535 990 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:37:57 has no hits.

BS14270.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:57 Download gff for BS14270.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 1..540 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:48 Download gff for BS14270.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 38..593 7..565 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:40 Download gff for BS14270.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 48..587 17..556 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:58 Download gff for BS14270.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 38..593 7..565 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:58 Download gff for BS14270.complete
Subject Subject Range Query Range Percent Splice Strand
Tim17b1-RA 48..587 17..556 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:58 Download gff for BS14270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5300192..5300513 17..338 100 -> Plus
3R 5300705..5300901 339..535 100 -> Plus
3R 5300968..5300988 536..556 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:40 Download gff for BS14270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1125914..1126235 17..338 100 -> Plus
arm_3R 1126427..1126623 339..535 100 -> Plus
arm_3R 1126690..1126710 536..556 100   Plus

BS14270.pep Sequence

Translation from 16 to 555

> BS14270.pep
MAEYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSG
GLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTG
GILAARTGLTSMLSSALVGGALLALIEGVGIVVSHYSADSYRQVSPVERQ
QRYKQELLRQQKGVSPLAATYGEIDSSAL*

BS14270.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Tim17b1-PA 179 CG1158-PA 1..179 1..179 911 100 Plus
Tim17b-PB 173 CG40451-PB 1..146 1..146 545 67.8 Plus
Tim17b-PA 173 CG40451-PA 1..146 1..146 545 67.8 Plus
CG1724-PA 185 CG1724-PA 1..146 1..146 522 63 Plus
Tim17b2-PC 176 CG15257-PC 1..146 1..146 516 60.3 Plus