Clone Sequence Records
BS14270.3prime Sequence
476 bp (462 high quality bases) assembled on 2006-10-13
> BS14270.3prime
ATGGTCTAGAAAGCTTCTACAATGCCGAAGAGTCAATCTCTCCATAAGTC
GCTGCGAGTGGAGAAACGCCCTTTTGCTGCCGTAAAAGCTCCTGCTTATA
CCGTTGCTGCCGCTCCACGGGCGACACCTGGCGGTAGGAATCCGCCGAAT
AATGGGACACCACAATGCCCACGCCCTCTATTAGGGCCAATAGAGCCCCG
CCCACCAAGGCACTACTGAGCATGGAGGTTAGTCCAGTTCTAGCAGCAAG
AATGCCCCCGGTGGTTGCTCCACTAATTATGGCGTTCCACGGGTCCTCCT
TCTTCCGGAAGTAAACCAGTGAGCAGTCGATGGCGCTGAAGGTAGCGCCC
CACACCGCAAAGTTACCACCCACCAGGCCGGATCGAGCCCGTACCGCCGC
CAATCCTCCGCTCAATCGGTATCCCAGGCCGGAGGGGGCGTTTCGAAAGC
CCTTGATCGCCTGGAAGGCTCCTCCG
BS14270.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1158-PA | 540 | Tim17b1-RA | 81..540 | 476..17 | 2300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-RA | 785 | CG1158-RA | 128..589 | 476..15 | 2310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5300272..5300514 | 476..234 | 1215 | 100 | Minus |
3R | 32079331 | 3R | 5300704..5300901 | 235..38 | 990 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:25:12 has no hits.
BS14270.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:43 Download gff for
BS14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1158-PA | 81..540 | 17..476 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:23 Download gff for
BS14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 128..593 | 8..476 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:14:44 Download gff for
BS14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 128..593 | 8..476 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:14:44 Download gff for
BS14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5300705..5300901 | 38..234 | 100 | -> | Minus |
3R | 5300272..5300513 | 235..476 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:23 Download gff for
BS14270.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1126427..1126623 | 38..234 | 100 | -> | Minus |
arm_3R | 1125994..1126235 | 235..476 | 100 | -> | Minus |
BS14270.5prime Sequence
543 bp (498 high quality bases) assembled on 2006-10-13
> BS14270.5prime
GAAGTTATCAGTCGACATGGCGGAGTACGGTCGGGAGCCTTGTCCCTTTC
GCATTGTCGAGGATTGTGGTGGAGCCTTCGCAATGGGCGCCTTGGGCGGA
GGAGCCTTCCAGGCGATCAAGGGCTTTCGAAACGCCCCCTCCGGCCTGGG
ATACCGATTGAGCGGAGGATTGGCGGCGGTACGGGCTCGATCCGGCCTGG
TGGGTGGTAACTTTGCGGTGTGGGGCGCTACCTTCAGCGCCATCGACTGC
TCACTGGTTTACTTCCGGAAGAAGGAGGACCCGTGGAACGCCATAATTAG
TGGAGCAACCACCGGGGGCATTCTTGCTGCTAGAACTGGACTAACCTCCA
TGCTCAGTAGTGCCTTGGTGGGCGGGGCTCTATTGGCCCTAATAGAGGGC
GTGGGCATTGTGGTGTCCCATTATTCGGCGGATTCCTACCGCCAGGTGTC
GCCCGTGGAGCGGCAGCAACGGTATAAGCAGGAGCTTTTACGGCAGCAAA
AGGGCGTTTCTCCACTCGCAGCGACTTATGGAGAGATTGACTC
BS14270.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1158-PA | 540 | Tim17b1-RA | 1..527 | 17..543 | 2635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 04:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-RA | 785 | CG1158-RA | 45..574 | 14..543 | 2650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 04:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5300189..5300514 | 14..339 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 5300704..5300901 | 338..535 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 04:56:24 has no hits.
BS14270.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:44 Download gff for
BS14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1158-PA | 1..527 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 05:34:13 Download gff for
BS14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 38..574 | 7..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 06:50:11 Download gff for
BS14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 38..574 | 7..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 06:50:11 Download gff for
BS14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5300182..5300513 | 7..338 | 99 | -> | Plus |
3R | 5300705..5300901 | 339..535 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 05:34:13 Download gff for
BS14270.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1125904..1126235 | 7..338 | 99 | -> | Plus |
arm_3R | 1126427..1126623 | 339..535 | 100 | | Plus |
BS14270.complete Sequence
572 bp assembled on 2006-11-01
GenBank Submission: FJ637626
> BS14270.complete
GAAGTTATCAGTCGACATGGCGGAGTACGGTCGGGAGCCTTGTCCCTTTC
GCATTGTCGAGGATTGTGGTGGAGCCTTCGCAATGGGCGCCTTGGGCGGA
GGAGCCTTCCAGGCGATCAAGGGCTTTCGAAACGCCCCCTCCGGCCTGGG
ATACCGATTGAGCGGAGGATTGGCGGCGGTACGGGCTCGATCCGGCCTGG
TGGGTGGTAACTTTGCGGTGTGGGGCGCTACCTTCAGCGCCATCGACTGC
TCACTGGTTTACTTCCGGAAGAAGGAGGACCCGTGGAACGCCATAATTAG
TGGAGCAACCACCGGGGGCATTCTTGCTGCTAGAACTGGACTAACCTCCA
TGCTCAGTAGTGCCTTGGTGGGCGGGGCTCTATTGGCCCTAATAGAGGGC
GTGGGCATTGTGGTGTCCCATTATTCGGCGGATTCCTACCGCCAGGTGTC
GCCCGTGGAGCGGCAGCAACGGTATAAGCAGGAGCTTTTACGGCAGCAAA
AGGGCGTTTCTCCACTCGCAGCGACTTATGGAGAGATTGACTCTTCGGCA
TTGTAGAAGCTTTCTAGACCAT
BS14270.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-RA | 540 | CG1158-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-RA | 785 | CG1158-RA | 45..589 | 14..558 | 2725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5300189..5300514 | 14..339 | 1630 | 100 | Plus |
3R | 32079331 | 3R | 5300704..5300901 | 338..535 | 990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:37:57 has no hits.
BS14270.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:57 Download gff for
BS14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 1..540 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:48 Download gff for
BS14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 38..593 | 7..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:40 Download gff for
BS14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 48..587 | 17..556 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:58 Download gff for
BS14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 38..593 | 7..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:58 Download gff for
BS14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim17b1-RA | 48..587 | 17..556 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:58 Download gff for
BS14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5300192..5300513 | 17..338 | 100 | -> | Plus |
3R | 5300705..5300901 | 339..535 | 100 | -> | Plus |
3R | 5300968..5300988 | 536..556 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:40 Download gff for
BS14270.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1125914..1126235 | 17..338 | 100 | -> | Plus |
arm_3R | 1126427..1126623 | 339..535 | 100 | -> | Plus |
arm_3R | 1126690..1126710 | 536..556 | 100 | | Plus |
BS14270.pep Sequence
Translation from 16 to 555
> BS14270.pep
MAEYGREPCPFRIVEDCGGAFAMGALGGGAFQAIKGFRNAPSGLGYRLSG
GLAAVRARSGLVGGNFAVWGATFSAIDCSLVYFRKKEDPWNAIISGATTG
GILAARTGLTSMLSSALVGGALLALIEGVGIVVSHYSADSYRQVSPVERQ
QRYKQELLRQQKGVSPLAATYGEIDSSAL*
BS14270.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim17b1-PA | 179 | CG1158-PA | 1..179 | 1..179 | 911 | 100 | Plus |
Tim17b-PB | 173 | CG40451-PB | 1..146 | 1..146 | 545 | 67.8 | Plus |
Tim17b-PA | 173 | CG40451-PA | 1..146 | 1..146 | 545 | 67.8 | Plus |
CG1724-PA | 185 | CG1724-PA | 1..146 | 1..146 | 522 | 63 | Plus |
Tim17b2-PC | 176 | CG15257-PC | 1..146 | 1..146 | 516 | 60.3 | Plus |