Clone Sequence Records
BS14274.3prime Sequence
571 bp (543 high quality bases) assembled on 2006-10-13
> BS14274.3prime
ATGGTCTAGAAAGCTTTTAGGAATTCGTAAATCGTTGGTATATTTTTGGT
ACAATCAAGTTAAATATAAATCGCAGAATCATAAAAACTAGAATTAGGCC
AAAAACTACGCCTATAACCAAAGTGGTCCACTCTAAAGGATTCAGGCTGT
TGGTAGTGGGTAAAACGTGTGTGTTGATGCCACTCCAACCACCATTCTCG
TTAATCCACGGAACCAGCTCATCTTCGATCACCTCGGAAACGCTCTCCAT
CAACTTGGGCAAGTATTCCGGATGTCCTTGGCGTACACAATCAACGGACA
GCCCACCGGCGATGGCGAACAGAGAGATCACCTTGCTCCACGTAATCTCC
ACCCGGAAGAGCTCGCGACCAACGGCTCCCAAAAGCAAGCTCACAGCATC
CGGAGTATGGAACTCACCACCCGGATTCCGACAAATCTGACGAGCTACTC
CGTTGTATATCCGGGGATGCATGCGCTCCAGTTCATCGCCCAGCACTTGG
ACCGCTGGAAACACATCGCGCACAATGCCCATGGAGGTGGAGCCCAGTAT
GCTACGTATGCGCTGCAGTCC
BS14274.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8238-PA | 900 | Buffy-RA | 346..900 | 571..17 | 2750 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-RA | 1038 | CG8238-RA | 484..1038 | 571..17 | 2760 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11688019..11688328 | 494..185 | 1535 | 99.7 | Minus |
2R | 25286936 | 2R | 11688389..11688558 | 185..16 | 850 | 100 | Minus |
2R | 25286936 | 2R | 11687882..11687959 | 571..494 | 390 | 100 | Minus |
Blast to na_te.dros performed 2015-01-31 10:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
412 | 7567 | 412 412 7567bp | 854..895 | 56..15 | 111 | 73.8 | Minus |
BS14274.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:45 Download gff for
BS14274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8238-PA | 346..900 | 17..571 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:41 Download gff for
BS14274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 484..1038 | 17..571 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:30 Download gff for
BS14274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 484..1038 | 17..571 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:30 Download gff for
BS14274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11687882..11687959 | 494..571 | 100 | -> | Minus |
2R | 11688020..11688328 | 185..493 | 99 | -> | Minus |
2R | 11688390..11688562 | 10..184 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:41 Download gff for
BS14274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7575387..7575464 | 494..571 | 100 | -> | Minus |
arm_2R | 7575525..7575833 | 185..493 | 99 | -> | Minus |
arm_2R | 7575895..7576067 | 10..184 | 98 | | Minus |
BS14274.5prime Sequence
595 bp (528 high quality bases) assembled on 2006-10-13
> BS14274.5prime
GAAGTTATCAGTCGACATGCCCGGCACCTCGTATCCCACGAATAACGATA
ATTTCAGCAACGGATTTCCGATGGCCACCACACAAAGTGAGCGCCTCTTG
CAGGCCCAGAATCGAAGAAAGTTCAGTTTTCCAGCCACACTACATTCCGC
ATCACTACTGGAGGTGGGTGGTGGTCCCAAGGAGACCACGAGGCGTAGGT
TGAGCAATGTCAGCGATGCCGTAACCAGGAAACTCTCCTACACGATTGGC
TGGAAGGCGGCACAGATTCCAGCGCAGGATATCATTTCTCAGGGTCGTTG
CCTGTGCGGTCATTATATCAAGAGACGCCTCAGAAGATCTGGTTTGTTCA
ACAAAAAGCTGGGACTGCAGCGCATACGTAGCATACTGGGCTCCACCTCC
ATGGGCATTGTGCGCGATGTGTTTCCAGCGGTCCAAGTGCTGGGCGATGA
ACTGGAGCGCATGCATCCCCGGATATACAACGGAGTAGCTCGTCAGATTT
GTCGGAATCCGGGTGGTGAGTTCCATACTCCGGATGCTGTGAGCTTGCTT
TTGGGAGCCGTTGGTCGCGAGCTCTTCCGGGTGGAAATACGTGGA
BS14274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8238-PA | 900 | Buffy-RA | 1..569 | 17..585 | 2745 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-RA | 1038 | CG8238-RA | 137..718 | 15..595 | 2810 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11687459..11687737 | 15..293 | 1350 | 98.9 | Plus |
2R | 25286936 | 2R | 11687811..11687959 | 291..439 | 745 | 100 | Plus |
2R | 25286936 | 2R | 11688019..11688165 | 439..585 | 720 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:47:07 has no hits.
BS14274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:45 Download gff for
BS14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8238-PA | 1..579 | 17..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:34 Download gff for
BS14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 137..717 | 15..594 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:28 Download gff for
BS14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 137..717 | 15..594 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:28 Download gff for
BS14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11687459..11687736 | 15..292 | 98 | -> | Plus |
2R | 11687813..11687959 | 293..439 | 100 | -> | Plus |
2R | 11688020..11688175 | 440..594 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:34 Download gff for
BS14274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7574964..7575241 | 15..292 | 98 | -> | Plus |
arm_2R | 7575318..7575464 | 293..439 | 100 | -> | Plus |
arm_2R | 7575525..7575680 | 440..594 | 98 | | Plus |
BS14274.complete Sequence
932 bp assembled on 2006-11-01
GenBank Submission: FJ637627
> BS14274.complete
GAAGTTATCAGTCGACATGCCCGGCACCTCGTATCCCACGAATAACGATA
ATTTCAGCAACGGATTTCCGATGGCCACCACACAAAGTGAGCGCCTCTTG
CAGGCCCAGAATCGAAGAAAGTTCAGTTTTCCAGCCACACTACATTCCGC
ATCACTACTGGAGGTGGGTGGTGGTCCCAAGGAGACCACGAGGCGTAGGT
TGAGCAATGTCAGCGATGCCGTAACCAGGAAACTCTCCTACACGATTGGC
TGGAAGGCGGCACAGATTCCAGCGCAGGATATCATTTCTCAGGGTCGTTG
CCTGTGCGGTCATTATATCAAGAGACGCCTCAGAAGATCTGGTTTGTTCA
ACAAAAAGCTGGGACTGCAGCGCATACGTAGCATACTGGGCTCCACCTCC
ATGGGCATTGTGCGCGATGTGTTTCCAGCGGTCCAAGTGCTGGGCGATGA
ACTGGAGCGCATGCATCCCCGGATATACAACGGAGTAGCTCGTCAGATTT
GTCGGAATCCGGGTGGTGAGTTCCATACTCCGGATGCTGTGAGCTTGCTT
TTGGGAGCCGTTGGTCGCGAGCTCTTCCGGGTGGAGATTACGTGGAGCAA
GGTGATCTCTCTGTTCGCCATCGCCGGTGGGCTGTCCGTTGATTGTGTAC
GCCAAGGACATCCGGAATACTTGCCCAAGTTGATGGAGAGCGTTTCCGAG
GTGATCGAAGATGAGCTGGTTCCGTGGATTAACGAGAATGGTGGTTGGAG
TGGCATCAACACACACGTTTTACCCACTACCAACAGCCTGAATCCTTTAG
AGTGGACCACTTTGGTTATAGGCGTAGTTTTTGGCCTAATTCTAGTTTTT
ATGATTCTGCGATTTATATTTAACTTGATTGTACCAAAAATATACCAACG
ATTTACGAATTCCTAAAAGCTTTCTAGACCAT
BS14274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-RA | 900 | CG8238-PA | 1..900 | 17..916 | 4440 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-RA | 1038 | CG8238-RA | 137..1038 | 15..916 | 4450 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11688019..11688328 | 439..748 | 1535 | 99.7 | Plus |
2R | 25286936 | 2R | 11687459..11687737 | 15..293 | 1350 | 98.9 | Plus |
2R | 25286936 | 2R | 11688389..11688558 | 748..917 | 850 | 100 | Plus |
2R | 25286936 | 2R | 11687811..11687959 | 291..439 | 745 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
412 | 7567 | 412 412 7567bp | 854..895 | 877..918 | 111 | 73.8 | Plus |
BS14274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:26 Download gff for
BS14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 1..900 | 17..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:38 Download gff for
BS14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 156..1062 | 15..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:46 Download gff for
BS14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 139..1036 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:26 Download gff for
BS14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 156..1062 | 15..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:31 Download gff for
BS14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Buffy-RA | 139..1036 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:31 Download gff for
BS14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11687461..11687736 | 17..292 | 98 | -> | Plus |
2R | 11687813..11687959 | 293..439 | 100 | -> | Plus |
2R | 11688020..11688328 | 440..748 | 99 | -> | Plus |
2R | 11688390..11688555 | 749..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:46 Download gff for
BS14274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7574966..7575241 | 17..292 | 98 | -> | Plus |
arm_2R | 7575318..7575464 | 293..439 | 100 | -> | Plus |
arm_2R | 7575525..7575833 | 440..748 | 99 | -> | Plus |
arm_2R | 7575895..7576060 | 749..914 | 100 | | Plus |
BS14274.pep Sequence
Translation from 16 to 915
> BS14274.pep
MPGTSYPTNNDNFSNGFPMATTQSERLLQAQNRRKFSFPATLHSASLLEV
GGGPKETTRRRLSNVSDAVTRKLSYTIGWKAAQIPAQDIISQGRCLCGHY
IKRRLRRSGLFNKKLGLQRIRSILGSTSMGIVRDVFPAVQVLGDELERMH
PRIYNGVARQICRNPGGEFHTPDAVSLLLGAVGRELFRVEITWSKVISLF
AIAGGLSVDCVRQGHPEYLPKLMESVSEVIEDELVPWINENGGWSGINTH
VLPTTNSLNPLEWTTLVIGVVFGLILVFMILRFIFNLIVPKIYQRFTNS*
BS14274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Buffy-PA | 299 | CG8238-PA | 1..299 | 1..299 | 1553 | 100 | Plus |
Debcl-PA | 300 | CG33134-PA | 96..291 | 88..284 | 521 | 47.7 | Plus |