Clone BS14274 Report

Search the DGRC for BS14274

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptBuffy-RA
Protein status:BS14274.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14274.3prime Sequence

571 bp (543 high quality bases) assembled on 2006-10-13

> BS14274.3prime
ATGGTCTAGAAAGCTTTTAGGAATTCGTAAATCGTTGGTATATTTTTGGT
ACAATCAAGTTAAATATAAATCGCAGAATCATAAAAACTAGAATTAGGCC
AAAAACTACGCCTATAACCAAAGTGGTCCACTCTAAAGGATTCAGGCTGT
TGGTAGTGGGTAAAACGTGTGTGTTGATGCCACTCCAACCACCATTCTCG
TTAATCCACGGAACCAGCTCATCTTCGATCACCTCGGAAACGCTCTCCAT
CAACTTGGGCAAGTATTCCGGATGTCCTTGGCGTACACAATCAACGGACA
GCCCACCGGCGATGGCGAACAGAGAGATCACCTTGCTCCACGTAATCTCC
ACCCGGAAGAGCTCGCGACCAACGGCTCCCAAAAGCAAGCTCACAGCATC
CGGAGTATGGAACTCACCACCCGGATTCCGACAAATCTGACGAGCTACTC
CGTTGTATATCCGGGGATGCATGCGCTCCAGTTCATCGCCCAGCACTTGG
ACCGCTGGAAACACATCGCGCACAATGCCCATGGAGGTGGAGCCCAGTAT
GCTACGTATGCGCTGCAGTCC

BS14274.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8238-PA 900 Buffy-RA 346..900 571..17 2750 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
Buffy-RA 1038 CG8238-RA 484..1038 571..17 2760 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11688019..11688328 494..185 1535 99.7 Minus
2R 25286936 2R 11688389..11688558 185..16 850 100 Minus
2R 25286936 2R 11687882..11687959 571..494 390 100 Minus
Blast to na_te.dros performed 2015-01-31 10:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 854..895 56..15 111 73.8 Minus

BS14274.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:45 Download gff for BS14274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8238-PA 346..900 17..571 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:41 Download gff for BS14274.3prime
Subject Subject Range Query Range Percent Splice Strand
Buffy-RA 484..1038 17..571 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:30 Download gff for BS14274.3prime
Subject Subject Range Query Range Percent Splice Strand
Buffy-RA 484..1038 17..571 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:30 Download gff for BS14274.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11687882..11687959 494..571 100 -> Minus
2R 11688020..11688328 185..493 99 -> Minus
2R 11688390..11688562 10..184 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:41 Download gff for BS14274.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7575387..7575464 494..571 100 -> Minus
arm_2R 7575525..7575833 185..493 99 -> Minus
arm_2R 7575895..7576067 10..184 98   Minus

BS14274.5prime Sequence

595 bp (528 high quality bases) assembled on 2006-10-13

> BS14274.5prime
GAAGTTATCAGTCGACATGCCCGGCACCTCGTATCCCACGAATAACGATA
ATTTCAGCAACGGATTTCCGATGGCCACCACACAAAGTGAGCGCCTCTTG
CAGGCCCAGAATCGAAGAAAGTTCAGTTTTCCAGCCACACTACATTCCGC
ATCACTACTGGAGGTGGGTGGTGGTCCCAAGGAGACCACGAGGCGTAGGT
TGAGCAATGTCAGCGATGCCGTAACCAGGAAACTCTCCTACACGATTGGC
TGGAAGGCGGCACAGATTCCAGCGCAGGATATCATTTCTCAGGGTCGTTG
CCTGTGCGGTCATTATATCAAGAGACGCCTCAGAAGATCTGGTTTGTTCA
ACAAAAAGCTGGGACTGCAGCGCATACGTAGCATACTGGGCTCCACCTCC
ATGGGCATTGTGCGCGATGTGTTTCCAGCGGTCCAAGTGCTGGGCGATGA
ACTGGAGCGCATGCATCCCCGGATATACAACGGAGTAGCTCGTCAGATTT
GTCGGAATCCGGGTGGTGAGTTCCATACTCCGGATGCTGTGAGCTTGCTT
TTGGGAGCCGTTGGTCGCGAGCTCTTCCGGGTGGAAATACGTGGA

BS14274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8238-PA 900 Buffy-RA 1..569 17..585 2745 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Buffy-RA 1038 CG8238-RA 137..718 15..595 2810 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11687459..11687737 15..293 1350 98.9 Plus
2R 25286936 2R 11687811..11687959 291..439 745 100 Plus
2R 25286936 2R 11688019..11688165 439..585 720 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 03:47:07 has no hits.

BS14274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:45 Download gff for BS14274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8238-PA 1..579 17..594 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:34 Download gff for BS14274.5prime
Subject Subject Range Query Range Percent Splice Strand
Buffy-RA 137..717 15..594 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:28 Download gff for BS14274.5prime
Subject Subject Range Query Range Percent Splice Strand
Buffy-RA 137..717 15..594 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:28 Download gff for BS14274.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11687459..11687736 15..292 98 -> Plus
2R 11687813..11687959 293..439 100 -> Plus
2R 11688020..11688175 440..594 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:34 Download gff for BS14274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7574964..7575241 15..292 98 -> Plus
arm_2R 7575318..7575464 293..439 100 -> Plus
arm_2R 7575525..7575680 440..594 98   Plus

BS14274.complete Sequence

932 bp assembled on 2006-11-01

GenBank Submission: FJ637627

> BS14274.complete
GAAGTTATCAGTCGACATGCCCGGCACCTCGTATCCCACGAATAACGATA
ATTTCAGCAACGGATTTCCGATGGCCACCACACAAAGTGAGCGCCTCTTG
CAGGCCCAGAATCGAAGAAAGTTCAGTTTTCCAGCCACACTACATTCCGC
ATCACTACTGGAGGTGGGTGGTGGTCCCAAGGAGACCACGAGGCGTAGGT
TGAGCAATGTCAGCGATGCCGTAACCAGGAAACTCTCCTACACGATTGGC
TGGAAGGCGGCACAGATTCCAGCGCAGGATATCATTTCTCAGGGTCGTTG
CCTGTGCGGTCATTATATCAAGAGACGCCTCAGAAGATCTGGTTTGTTCA
ACAAAAAGCTGGGACTGCAGCGCATACGTAGCATACTGGGCTCCACCTCC
ATGGGCATTGTGCGCGATGTGTTTCCAGCGGTCCAAGTGCTGGGCGATGA
ACTGGAGCGCATGCATCCCCGGATATACAACGGAGTAGCTCGTCAGATTT
GTCGGAATCCGGGTGGTGAGTTCCATACTCCGGATGCTGTGAGCTTGCTT
TTGGGAGCCGTTGGTCGCGAGCTCTTCCGGGTGGAGATTACGTGGAGCAA
GGTGATCTCTCTGTTCGCCATCGCCGGTGGGCTGTCCGTTGATTGTGTAC
GCCAAGGACATCCGGAATACTTGCCCAAGTTGATGGAGAGCGTTTCCGAG
GTGATCGAAGATGAGCTGGTTCCGTGGATTAACGAGAATGGTGGTTGGAG
TGGCATCAACACACACGTTTTACCCACTACCAACAGCCTGAATCCTTTAG
AGTGGACCACTTTGGTTATAGGCGTAGTTTTTGGCCTAATTCTAGTTTTT
ATGATTCTGCGATTTATATTTAACTTGATTGTACCAAAAATATACCAACG
ATTTACGAATTCCTAAAAGCTTTCTAGACCAT

BS14274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Buffy-RA 900 CG8238-PA 1..900 17..916 4440 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:34:30
Subject Length Description Subject Range Query Range Score Percent Strand
Buffy-RA 1038 CG8238-RA 137..1038 15..916 4450 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11688019..11688328 439..748 1535 99.7 Plus
2R 25286936 2R 11687459..11687737 15..293 1350 98.9 Plus
2R 25286936 2R 11688389..11688558 748..917 850 100 Plus
2R 25286936 2R 11687811..11687959 291..439 745 100 Plus
Blast to na_te.dros performed 2014-11-27 14:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 854..895 877..918 111 73.8 Plus

BS14274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:26 Download gff for BS14274.complete
Subject Subject Range Query Range Percent Splice Strand
Buffy-RA 1..900 17..916 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:38 Download gff for BS14274.complete
Subject Subject Range Query Range Percent Splice Strand
Buffy-RA 156..1062 15..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:46 Download gff for BS14274.complete
Subject Subject Range Query Range Percent Splice Strand
Buffy-RA 139..1036 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:26 Download gff for BS14274.complete
Subject Subject Range Query Range Percent Splice Strand
Buffy-RA 156..1062 15..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:31 Download gff for BS14274.complete
Subject Subject Range Query Range Percent Splice Strand
Buffy-RA 139..1036 17..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:31 Download gff for BS14274.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11687461..11687736 17..292 98 -> Plus
2R 11687813..11687959 293..439 100 -> Plus
2R 11688020..11688328 440..748 99 -> Plus
2R 11688390..11688555 749..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:46 Download gff for BS14274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7574966..7575241 17..292 98 -> Plus
arm_2R 7575318..7575464 293..439 100 -> Plus
arm_2R 7575525..7575833 440..748 99 -> Plus
arm_2R 7575895..7576060 749..914 100   Plus

BS14274.pep Sequence

Translation from 16 to 915

> BS14274.pep
MPGTSYPTNNDNFSNGFPMATTQSERLLQAQNRRKFSFPATLHSASLLEV
GGGPKETTRRRLSNVSDAVTRKLSYTIGWKAAQIPAQDIISQGRCLCGHY
IKRRLRRSGLFNKKLGLQRIRSILGSTSMGIVRDVFPAVQVLGDELERMH
PRIYNGVARQICRNPGGEFHTPDAVSLLLGAVGRELFRVEITWSKVISLF
AIAGGLSVDCVRQGHPEYLPKLMESVSEVIEDELVPWINENGGWSGINTH
VLPTTNSLNPLEWTTLVIGVVFGLILVFMILRFIFNLIVPKIYQRFTNS*

BS14274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Buffy-PA 299 CG8238-PA 1..299 1..299 1553 100 Plus
Debcl-PA 300 CG33134-PA 96..291 88..284 521 47.7 Plus