Clone Sequence Records
BS14275.3prime Sequence
603 bp (603 high quality bases) assembled on 2006-10-13
> BS14275.3prime
ATGGTCTAGAAAGCTTTTAGCCCTCAGTGAGTGCGTAGGTCATAAGGGCC
AGGATGCCGGTGTTTCCCAGAGTCTCTACAACGTTGCTAAGGCCCTCGTT
GCAGCTATCGACAATTGCACCGCCGTATCTGGCGAGGAGCGCGGTGGCAG
CCACACCGAAGTAGATATGGTTGCCGTCCTTGATGGCCAGATACAACGTG
GAGCCGATGTTGCCCAACAGAGCGAGGTCCATCAGCGTCTCCGTGGAGCT
GTCCCAGTCCTCGCTGATCTTGCCGATCATGTCGTAGAACAGTGGAATCA
ACGACAGGCCGTGCACCAGCGCCACTCCCGACTGATCGGATACCAGGTAG
AACTCGATGTTCGCCAGTGGCAGCGGGATAACCTCCAGTATGATGGCTGA
GATCATAAAGGTGCGTCCGCACTCGTCGGGCTCGTTGGCAAAGGAGCGAA
CCACGCCCAGCACTCCGTGGACCAGGCTGAAGGATGCCGCCAGGAAGGCA
TACGGATGGTCCGCCGGGGTCAGTGAGGTCATCGTGTAAATGCAGGCCAA
GATCAGCAGCAGATTGACCAGTGCCCCCACCACATGCATGTCGACTGATA
ACT
BS14275.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12679-PA | 573 | CG12679-RA | 1..573 | 589..17 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:35:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12679-RA | 759 | CG12679-RA | 131..703 | 589..17 | 2865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:35:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20375820..20376392 | 17..589 | 2865 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:35:52 has no hits.
BS14275.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:46 Download gff for
BS14275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-PA | 1..573 | 17..589 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:17 Download gff for
BS14275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-RA | 131..708 | 12..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:50 Download gff for
BS14275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-RA | 131..708 | 12..589 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:50 Download gff for
BS14275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20375815..20376392 | 12..589 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:17 Download gff for
BS14275.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20246842..20247419 | 12..589 | 99 | | Plus |
BS14275.5prime Sequence
598 bp (587 high quality bases) assembled on 2006-10-13
> BS14275.5prime
GAAGTTATCAGTCGACATGCATGTGGTGGGGGCACTGGTCAATCTGCTGC
TGATCTTGGCCTGCATTTACACGATGACCTCACTGACCCCGGCGGACCAT
CCGTATGCCTTCCTGGCGGCATCCTTCAGCCTGGTCCACGGAGTGCTGGG
CGTGGTTCGCTCCTTTGCCAACGAGCCCGACGAGTGCGGACGCACCTTTA
TGATCTCAGCCATCATACTGGAGGTTATCCCGCTGCCACTGGCGAACATC
GAGTTCTACCTGGTATCCGATCAGTCGGGAGTGGCGCTGGTGCACGGCCT
GTCGTTGATTCCACTGTTCTACGACATGATCGGCAAGATCAGCGAGGACT
GGGACAGCTCCACGGAGACGCTGATGGACCTCGCTCTGTTGGGCAACATC
GGCTCCACGTTGTATCTGGCCATCAAGGACGGCAACCATATCTACTTCGG
TGTGGCTGCCACCGCGCTCCTCGCCAGATACGGCGGTGCAATTGTCGATA
GCTGCAACGAGGGCCTTAGCAACGTTGTAGAGACTCTGGGAAACACCGGC
ATCCTGGCCCTTATGACCTACGCACTCACTGAGGGCTAAAAGCTTTCT
BS14275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12679-PA | 573 | CG12679-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12679-RA | 759 | CG12679-RA | 131..703 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20375820..20376392 | 589..17 | 2865 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:47:21 has no hits.
BS14275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:46 Download gff for
BS14275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-PA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:40 Download gff for
BS14275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-RA | 131..708 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:48 Download gff for
BS14275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-RA | 131..708 | 17..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:48 Download gff for
BS14275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20375815..20376392 | 17..594 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:40 Download gff for
BS14275.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20246842..20247419 | 17..594 | 99 | | Minus |
BS14275.complete Sequence
605 bp assembled on 2006-11-01
GenBank Submission: FJ637628
> BS14275.complete
GAAGTTATCAGTCGACATGCATGTGGTGGGGGCACTGGTCAATCTGCTGC
TGATCTTGGCCTGCATTTACACGATGACCTCACTGACCCCGGCGGACCAT
CCGTATGCCTTCCTGGCGGCATCCTTCAGCCTGGTCCACGGAGTGCTGGG
CGTGGTTCGCTCCTTTGCCAACGAGCCCGACGAGTGCGGACGCACCTTTA
TGATCTCAGCCATCATACTGGAGGTTATCCCGCTGCCACTGGCGAACATC
GAGTTCTACCTGGTATCCGATCAGTCGGGAGTGGCGCTGGTGCACGGCCT
GTCGTTGATTCCACTGTTCTACGACATGATCGGCAAGATCAGCGAGGACT
GGGACAGCTCCACGGAGACGCTGATGGACCTCGCTCTGTTGGGCAACATC
GGCTCCACGTTGTATCTGGCCATCAAGGACGGCAACCATATCTACTTCGG
TGTGGCTGCCACCGCGCTCCTCGCCAGATACGGCGGTGCAATTGTCGATA
GCTGCAACGAGGGCCTTAGCAACGTTGTAGAGACTCTGGGAAACACCGGC
ATCCTGGCCCTTATGACCTACGCACTCACTGAGGGCTAAAAGCTTTCTAG
ACCAT
BS14275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12679-RA | 573 | CG12679-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12679-RA | 759 | CG12679-RA | 131..703 | 17..589 | 2865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:51:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20375820..20376392 | 589..17 | 2865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:52:00 has no hits.
BS14275.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:27 Download gff for
BS14275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-RA | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:40 Download gff for
BS14275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-RA | 131..708 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:40:12 Download gff for
BS14275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-RA | 131..701 | 17..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:28 Download gff for
BS14275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-RA | 131..708 | 17..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:54 Download gff for
BS14275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12679-RA | 131..701 | 17..587 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:54 Download gff for
BS14275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20375822..20376392 | 17..587 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:40:12 Download gff for
BS14275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20246849..20247419 | 17..587 | 100 | | Minus |
BS14275.pep Sequence
Translation from 16 to 588
> BS14275.pep
MHVVGALVNLLLILACIYTMTSLTPADHPYAFLAASFSLVHGVLGVVRSF
ANEPDECGRTFMISAIILEVIPLPLANIEFYLVSDQSGVALVHGLSLIPL
FYDMIGKISEDWDSSTETLMDLALLGNIGSTLYLAIKDGNHIYFGVAATA
LLARYGGAIVDSCNEGLSNVVETLGNTGILALMTYALTEG*
BS14275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12679-PA | 190 | CG12679-PA | 1..190 | 1..190 | 959 | 100 | Plus |
| CG14269-PB | 190 | CG14269-PB | 1..188 | 1..188 | 395 | 42.6 | Plus |
| CG14269-PA | 190 | CG14269-PA | 1..188 | 1..188 | 395 | 42.6 | Plus |
| CG16782-PA | 200 | CG16782-PA | 7..197 | 4..188 | 247 | 32.3 | Plus |
| CG14537-PA | 203 | CG14537-PA | 15..198 | 9..187 | 234 | 31.9 | Plus |
