Clone Sequence Records
BS14276.3prime Sequence
572 bp (530 high quality bases) assembled on 2006-10-13
> BS14276.3prime
ATGGTCTAGAAAGCTTCTAAAATCCACTCTGGCCTTCCCACTGACGCAGC
TGCTCGACGGACAGCCAAAAGAGCACTGAGAACGGTCCCAGCCGAAACCA
AGTGGGCATTAGGCCCTTATATAACGTGAGGACACCCTCCTCCCTGACCA
GCTTCCTAACGCAGTCGAGGGAGTTCTTGTAGTACAGATTCTTGCCGCTC
TCGTCCACCGGCTGGTTCATCATCCGCGACTTGATCACGTCCGCCGGCGT
GCTGAGCACGGATGCCGTTAGTCCGGCGCACATGGAAGACACGAAACGCA
GTGGCAGGCCTTCCTCCAAGTCCAGCAGGCGCTTGAAGGTGCGCTTACTG
ATATCGTAGCTGCCCACATCGCCGGTCGTCATCAGGCAGGCACGCATGCA
GCTGGGCCCTACACCCTTCCACATACTGGGCAGTCCGCCACGGCGGTAGA
TGTCCACGAAGGCCTGCACCATGCTGTTCACCCGCACATCATAGCCCAGC
TGGCGGCGGCGTCCTTCCGTCTGCATTCGCACCTTGACAATGTCAAAGGG
ATTGGCCAGTGCCCTGGCAATG
BS14276.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9064-PA | 1008 | Ucp4C-RA | 462..1008 | 563..17 | 2710 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4C-RA | 1196 | CG9064-RA | 570..1129 | 572..13 | 2740 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5969135..5969694 | 572..13 | 2740 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:53:41 has no hits.
BS14276.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:47 Download gff for
BS14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9064-PA | 453..1008 | 17..572 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:21 Download gff for
BS14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4C-RA | 570..1135 | 7..572 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:09 Download gff for
BS14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4C-RA | 570..1135 | 7..572 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:09 Download gff for
BS14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5969135..5969700 | 7..572 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:21 Download gff for
BS14276.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5969135..5969700 | 7..572 | 98 | | Minus |
BS14276.5prime Sequence
575 bp (504 high quality bases) assembled on 2006-10-13
> BS14276.5prime
GAAGTTATCAGTCGACATGGACAAAGCTGAACGCGACTACTGGCATCTTC
GATCCTTGGAAATCGAAGAGGAGCCGCGATTTCCGCCAACAAACGTCGCT
GATCCACTAACCGCACGCAATCTGTTCCAGCTCTACGTCAACACCTTCAT
TGGAGCCAATCTGGCCGAGTCGTGTGTCTTCCCATTGGACGTGGCCAAGA
CCCGGATGCAGGTAGATGGCGAGCAGGCCAAGAAGACGGGTAAAGCGATG
CCAACTTTCCGGGCAACTCTTACCAACATGATCCGAGTGGAGGGATTCAA
GTCGCTCTACGCCGGCTTCTCGGCAATGGTGACCCGAAACTTTATCTTCA
ACTCGTTACGTGTTGTTCTCTACGACGTTTTCCGGCGCCCTTTTCTCTAC
CAGAACGAGCGGAACGAGGAAGTGCTCAAGATCTACATGGCGCTGGGATG
CAGCTTCACCGCAGGCTGCATTGCCCAGGCACTGGCCAATCCCTTTGACA
TCGTCAAGGTGCGAATGCAGACGGAAGGACGCCGCCGCCAGCTGGGCTAT
GATGTGCGGGTGAACAGCATGGTGC
BS14276.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9064-PA | 1008 | Ucp4C-RA | 1..559 | 17..575 | 2795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4C-RA | 1196 | CG9064-RA | 118..676 | 17..575 | 2795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5968683..5969241 | 17..575 | 2795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:47:33 has no hits.
BS14276.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:47 Download gff for
BS14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9064-PA | 1..559 | 17..575 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:44 Download gff for
BS14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4C-RA | 105..676 | 5..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:10 Download gff for
BS14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4C-RA | 105..676 | 5..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:10 Download gff for
BS14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5968670..5969241 | 5..575 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:44 Download gff for
BS14276.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5968670..5969241 | 5..575 | 99 | | Plus |
BS14276.complete Sequence
1040 bp assembled on 2006-11-01
GenBank Submission: FJ638860
> BS14276.complete
GAAGTTATCAGTCGACATGGACAAAGCTGAACGCGACTACTGGCATCTTC
GATCCTTGGAAATCGAAGAGGAGCCGCGATTTCCGCCAACAAACGTCGCT
GATCCACTAACCGCACGCAATCTGTTCCAGCTCTACGTCAACACCTTCAT
TGGAGCCAATCTGGCCGAGTCGTGTGTCTTCCCATTGGACGTGGCCAAGA
CCCGGATGCAGGTAGATGGCGAGCAGGCCAAGAAGACGGGTAAAGCGATG
CCAACTTTCCGGGCAACTCTTACCAACATGATCCGAGTGGAGGGATTCAA
GTCGCTCTACGCCGGCTTCTCGGCAATGGTGACCCGAAACTTTATCTTCA
ACTCGTTACGTGTTGTTCTCTACGACGTTTTCCGGCGCCCTTTTCTCTAC
CAGAACGAGCGGAACGAGGAAGTGCTCAAGATCTACATGGCGCTGGGATG
CAGCTTCACCGCAGGCTGCATTGCCCAGGCACTGGCCAATCCCTTTGACA
TCGTCAAGGTGCGAATGCAGACGGAAGGACGCCGCCGCCAGCTGGGCTAT
GATGTGCGGGTGAACAGCATGGTGCAGGCCTTCGTGGACATCTACCGCCG
TGGCGGACTGCCCAGTATGTGGAAGGGTGTAGGGCCCAGCTGCATGCGTG
CCTGCCTGATGACGACCGGCGATGTGGGCAGCTACGATATCAGTAAGCGC
ACCTTCAAGCGCCTGCTGGACTTGGAGGAAGGCCTGCCACTGCGTTTCGT
GTCTTCCATGTGCGCCGGACTAACGGCATCCGTGCTCAGCACGCCGGCGG
ACGTGATCAAGTCGCGGATGATGAACCAGCCGGTGGACGAGAGCGGCAAG
AATCTGTACTACAAGAACTCCCTCGACTGCGTTAGGAAGCTGGTCAGGGA
GGAGGGTGTCCTCACGTTATATAAGGGCCTAATGCCCACTTGGTTTCGGC
TGGGACCGTTCTCAGTGCTCTTTTGGCTGTCCGTCGAGCAGCTGCGTCAG
TGGGAAGGCCAGAGTGGATTTTAGAAGCTTTCTAGACCAT
BS14276.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4C-RA | 1008 | CG9064-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4C-RA | 1196 | CG9064-RA | 118..1129 | 17..1028 | 5045 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5968683..5969694 | 17..1028 | 5045 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:12:44 has no hits.
BS14276.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:29 Download gff for
BS14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4C-RA | 1..1008 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:41 Download gff for
BS14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4C-RA | 74..1104 | 5..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:55 Download gff for
BS14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4C-RA | 118..1125 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:29 Download gff for
BS14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4C-RA | 74..1104 | 5..1034 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:16 Download gff for
BS14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ucp4C-RA | 118..1125 | 17..1024 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:16 Download gff for
BS14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5968683..5969690 | 17..1024 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:55 Download gff for
BS14276.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5968683..5969690 | 17..1024 | 100 | | Plus |
BS14276.pep Sequence
Translation from 16 to 1023
> BS14276.pep
MDKAERDYWHLRSLEIEEEPRFPPTNVADPLTARNLFQLYVNTFIGANLA
ESCVFPLDVAKTRMQVDGEQAKKTGKAMPTFRATLTNMIRVEGFKSLYAG
FSAMVTRNFIFNSLRVVLYDVFRRPFLYQNERNEEVLKIYMALGCSFTAG
CIAQALANPFDIVKVRMQTEGRRRQLGYDVRVNSMVQAFVDIYRRGGLPS
MWKGVGPSCMRACLMTTGDVGSYDISKRTFKRLLDLEEGLPLRFVSSMCA
GLTASVLSTPADVIKSRMMNQPVDESGKNLYYKNSLDCVRKLVREEGVLT
LYKGLMPTWFRLGPFSVLFWLSVEQLRQWEGQSGF*
BS14276.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ucp4C-PA | 335 | CG9064-PA | 1..335 | 1..335 | 1747 | 100 | Plus |
| Ucp4B-PA | 337 | CG18340-PA | 38..337 | 38..335 | 651 | 41.3 | Plus |
| Ucp4A-PB | 340 | CG6492-PB | 44..340 | 40..335 | 621 | 40 | Plus |
| Ucp4A-PA | 340 | CG6492-PA | 44..340 | 40..335 | 621 | 40 | Plus |
| Bmcp-PB | 303 | CG7314-PB | 20..303 | 50..329 | 399 | 31.5 | Plus |
