Clone Sequence Records
BS14282.3prime Sequence
569 bp (502 high quality bases) assembled on 2006-10-13
> BS14282.3prime
ATGGTCTAGAAAGCTTTCATTCAAATGAGTTAAAGCTGTGGGGAAGCAGA
TGGTAGGCGGACGTGACCAGCACTTCAGCTTCGTCCGGAATTGAAGGAAT
GCAGTTCTCTTGCTCCGGCGGCGGAGCCTTGGCAATGTAGATAGGAATAT
CATTTTGGATGAACTCCAAAATGAACTGCCGGCAGACTCCGCAAGGTGTG
GTAAACCCATCTGGGTGATAGGCTACCACAGCACCCGCCGTATACTTCTT
CTCGCCCTCGCTGATACCCTTGGCCAGGGCACAACGCTCCGCACAATTGC
CTGGAGTGAAAGCTACGTTCTCGATGTTGCAGCCCGCGTATATCCTGCCG
CACTTCGCACGGAAGGCTGCTCCCACTTTGAATTTGCTGTAGGGCGCATA
GGCACATCGACGGGCAGAAAGAGCCGCCTCTAGCAGCTCCCGGCCATCCT
CACCAACAGCACAGAACGCTACTGTGTACTCCTCCAACATCTGTGGATGT
GGCAGGGTTTCGGATTCACTAGCCCGACCCCTGTCGCCATTTAAACGCGC
CTCCCTGCGGGCCCGCTCG
BS14282.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8349-PA | 795 | CG8349-RA | 253..795 | 559..17 | 2640 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8349-RA | 928 | CG8349-RA | 314..868 | 569..15 | 2685 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8216402..8216841 | 454..15 | 2185 | 99.8 | Minus |
2L | 23513712 | 2L | 8216228..8216349 | 569..448 | 520 | 95.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:54:10 has no hits.
BS14282.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:50 Download gff for
BS14282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-PA | 243..795 | 17..569 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:25 Download gff for
BS14282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-RA | 314..873 | 9..569 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:56 Download gff for
BS14282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-RA | 314..873 | 9..569 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:56 Download gff for
BS14282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8216228..8216343 | 454..569 | 95 | -> | Minus |
2L | 8216403..8216846 | 9..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:25 Download gff for
BS14282.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8216228..8216343 | 454..569 | 95 | -> | Minus |
arm_2L | 8216403..8216846 | 9..453 | 99 | | Minus |
BS14282.5prime Sequence
554 bp (535 high quality bases) assembled on 2006-10-13
> BS14282.5prime
GAAGTTATCAGTCGACATGTCCGAAAAGCGGAAGCTCCTTCAGCGCTACA
TGCGGAACCTGAGCGACCTACAGGATGAGCTGAAGCGAAAAGAGCTGGAG
AAGAAGATGAAGGAACTGGAAATGTTGCAGGCGAAGCTAGCTCGTCGCCA
GGAGCAATCTGGCACCAAGTGCGCTGGCGGTAAGATCAAAAACTTGCGCC
AGAAGAATCTTCGAAAGGTACTGGGAAAGTATATGATGACCTTGGAGGGA
TTTCTATGCGAGCTGGCCCGCAGGGAGGCGCGTCTAAATGGCGACAGGGG
TCGGGCTAGTGAATCCGAAAACCTGCCACATCCACAGATGTTGGAGGAGT
ACACAGTAGCGTTCTGTGCTGTTGGTGAGGATGGCCGGGAGCTGCTAGAG
GCGGCTCTTTCTGCCCGTCGATGTGCCTATGCGCCCTACAGCAAATTCAA
AGTGGGAGCAGCCTTCCGTGCGAAGTGCGGCAGGATATACGCGGGCTGCA
ACATCGAGAACGTAGCTTTCACTCCAGGCAATTGTGCGGAGCGTTGTGCC
CTGG
BS14282.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8349-PA | 795 | CG8349-RA | 1..538 | 17..554 | 2590 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8349-RA | 928 | CG8349-RA | 72..609 | 17..554 | 2630 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8215986..8216349 | 17..380 | 1760 | 98.9 | Plus |
2L | 23513712 | 2L | 8216402..8216582 | 374..554 | 890 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:47:35 has no hits.
BS14282.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:50 Download gff for
BS14282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-PA | 1..538 | 17..554 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:45 Download gff for
BS14282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-RA | 64..609 | 8..554 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:16 Download gff for
BS14282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-RA | 64..609 | 8..554 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:16 Download gff for
BS14282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8215978..8216343 | 8..374 | 98 | -> | Plus |
2L | 8216403..8216582 | 375..554 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:45 Download gff for
BS14282.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8215978..8216343 | 8..374 | 98 | -> | Plus |
arm_2L | 8216403..8216582 | 375..554 | 99 | | Plus |
BS14282.complete Sequence
827 bp assembled on 2006-11-01
GenBank Submission: FJ637629
> BS14282.complete
GAAGTTATCAGTCGACATGTCCGAAAAGCGGAAGCTCCTTCAGCGCTACA
TGCGGAACCTGAGCGACCTACAGGATGAGCTGAAGCGAAAAGAGCTGGAG
AAGAAGATGAAGGAACTGGAAATGTTGCAGGCGAAGCTAGCTCGTCGCCA
GGAGCAATCTGGCACCAAGTGCGCTGGCGGTAAGATCAAAAACTTGCGCC
AGAAGAATCTTCGAAAGGTACTGGGAAAGTATATGATGACCTTGGAGGGA
TTTCTATGCGAGCTGGCCCGCAGGGAGGCGCGTCTAAATGGCGACAGGGG
TCGGGCTAGTGAATCCGAAAACCTGCCACATCCACAGATGTTGGAGGAGT
ACACAGTAGCGTTCTGTGCTGTTGGTGAGGATGGCCGGGAGCTGCTAGAG
GCGGCTCTTTCTGCCCGTCGATGTGCCTATGCGCCCTACAGCAAATTCAA
AGTGGGAGCAGCCTTCCGTGCGAAGTGCGGCAGGATATACGCGGGCTGCA
ACATCGAGAACGTAGCTTTCACTCCAGGCAATTGTGCGGAGCGTTGTGCC
CTGGCCAAGGGTATCAGCGAGGGCGAGAAGAAGTATACGGCGGGTGCTGT
GGTAGCCTATCACCCAGATGGGTTTACCACACCTTGCGGAGTCTGCCGGC
AGTTCATTTTGGAGTTCATCCAAAATGATATTCCTATCTACATTGCCAAG
GCTCCGCCGCCGGAGCAAGAGAACTGCATTCCTTCAATTCCGGACGAAGC
TGAAGTGCTGGTCACGTCCGCCTACCATCTGCTTCCCCACAGCTTTAACT
CATTTGAATGAAAGCTTTCTAGACCAT
BS14282.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8349-RA | 795 | CG8349-PA | 1..795 | 17..811 | 3915 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8349-RA | 928 | CG8349-RA | 72..868 | 17..813 | 3925 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8216402..8216841 | 374..813 | 2185 | 99.8 | Plus |
2L | 23513712 | 2L | 8215986..8216349 | 17..380 | 1760 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:25:53 has no hits.
BS14282.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:11 Download gff for
BS14282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-RA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:37 Download gff for
BS14282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-RA | 64..873 | 8..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:45 Download gff for
BS14282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-RA | 72..865 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:11 Download gff for
BS14282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-RA | 64..873 | 8..819 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:18 Download gff for
BS14282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8349-RA | 72..865 | 17..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:18 Download gff for
BS14282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8215986..8216343 | 17..374 | 99 | -> | Plus |
2L | 8216403..8216838 | 375..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:45 Download gff for
BS14282.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8215986..8216343 | 17..374 | 99 | -> | Plus |
arm_2L | 8216403..8216838 | 375..810 | 99 | | Plus |
BS14282.pep Sequence
Translation from 16 to 810
> BS14282.pep
MSEKRKLLQRYMRNLSDLQDELKRKELEKKMKELEMLQAKLARRQEQSGT
KCAGGKIKNLRQKNLRKVLGKYMMTLEGFLCELARREARLNGDRGRASES
ENLPHPQMLEEYTVAFCAVGEDGRELLEAALSARRCAYAPYSKFKVGAAF
RAKCGRIYAGCNIENVAFTPGNCAERCALAKGISEGEKKYTAGAVVAYHP
DGFTTPCGVCRQFILEFIQNDIPIYIAKAPPPEQENCIPSIPDEAEVLVT
SAYHLLPHSFNSFE*
BS14282.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8349-PA | 264 | CG8349-PA | 1..264 | 1..264 | 1381 | 100 | Plus |
CG8353-PB | 170 | CG8353-PB | 5..168 | 100..263 | 416 | 51.5 | Plus |
CG8353-PA | 170 | CG8353-PA | 5..168 | 100..263 | 416 | 51.5 | Plus |
CG8360-PC | 158 | CG8360-PC | 26..153 | 124..261 | 317 | 50.4 | Plus |
CG8360-PA | 158 | CG8360-PA | 26..153 | 124..261 | 317 | 50.4 | Plus |