Clone BS14282 Report

Search the DGRC for BS14282

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG8349-RA
Protein status:BS14282.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14282.3prime Sequence

569 bp (502 high quality bases) assembled on 2006-10-13

> BS14282.3prime
ATGGTCTAGAAAGCTTTCATTCAAATGAGTTAAAGCTGTGGGGAAGCAGA
TGGTAGGCGGACGTGACCAGCACTTCAGCTTCGTCCGGAATTGAAGGAAT
GCAGTTCTCTTGCTCCGGCGGCGGAGCCTTGGCAATGTAGATAGGAATAT
CATTTTGGATGAACTCCAAAATGAACTGCCGGCAGACTCCGCAAGGTGTG
GTAAACCCATCTGGGTGATAGGCTACCACAGCACCCGCCGTATACTTCTT
CTCGCCCTCGCTGATACCCTTGGCCAGGGCACAACGCTCCGCACAATTGC
CTGGAGTGAAAGCTACGTTCTCGATGTTGCAGCCCGCGTATATCCTGCCG
CACTTCGCACGGAAGGCTGCTCCCACTTTGAATTTGCTGTAGGGCGCATA
GGCACATCGACGGGCAGAAAGAGCCGCCTCTAGCAGCTCCCGGCCATCCT
CACCAACAGCACAGAACGCTACTGTGTACTCCTCCAACATCTGTGGATGT
GGCAGGGTTTCGGATTCACTAGCCCGACCCCTGTCGCCATTTAAACGCGC
CTCCCTGCGGGCCCGCTCG

BS14282.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8349-PA 795 CG8349-RA 253..795 559..17 2640 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8349-RA 928 CG8349-RA 314..868 569..15 2685 98.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8216402..8216841 454..15 2185 99.8 Minus
2L 23513712 2L 8216228..8216349 569..448 520 95.1 Minus
Blast to na_te.dros performed on 2015-02-10 20:54:10 has no hits.

BS14282.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:50 Download gff for BS14282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8349-PA 243..795 17..569 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:25 Download gff for BS14282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8349-RA 314..873 9..569 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:56 Download gff for BS14282.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8349-RA 314..873 9..569 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:56 Download gff for BS14282.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8216228..8216343 454..569 95 -> Minus
2L 8216403..8216846 9..453 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:25 Download gff for BS14282.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8216228..8216343 454..569 95 -> Minus
arm_2L 8216403..8216846 9..453 99   Minus

BS14282.5prime Sequence

554 bp (535 high quality bases) assembled on 2006-10-13

> BS14282.5prime
GAAGTTATCAGTCGACATGTCCGAAAAGCGGAAGCTCCTTCAGCGCTACA
TGCGGAACCTGAGCGACCTACAGGATGAGCTGAAGCGAAAAGAGCTGGAG
AAGAAGATGAAGGAACTGGAAATGTTGCAGGCGAAGCTAGCTCGTCGCCA
GGAGCAATCTGGCACCAAGTGCGCTGGCGGTAAGATCAAAAACTTGCGCC
AGAAGAATCTTCGAAAGGTACTGGGAAAGTATATGATGACCTTGGAGGGA
TTTCTATGCGAGCTGGCCCGCAGGGAGGCGCGTCTAAATGGCGACAGGGG
TCGGGCTAGTGAATCCGAAAACCTGCCACATCCACAGATGTTGGAGGAGT
ACACAGTAGCGTTCTGTGCTGTTGGTGAGGATGGCCGGGAGCTGCTAGAG
GCGGCTCTTTCTGCCCGTCGATGTGCCTATGCGCCCTACAGCAAATTCAA
AGTGGGAGCAGCCTTCCGTGCGAAGTGCGGCAGGATATACGCGGGCTGCA
ACATCGAGAACGTAGCTTTCACTCCAGGCAATTGTGCGGAGCGTTGTGCC
CTGG

BS14282.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8349-PA 795 CG8349-RA 1..538 17..554 2590 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8349-RA 928 CG8349-RA 72..609 17..554 2630 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8215986..8216349 17..380 1760 98.9 Plus
2L 23513712 2L 8216402..8216582 374..554 890 99.4 Plus
Blast to na_te.dros performed on 2015-02-12 03:47:35 has no hits.

BS14282.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:50 Download gff for BS14282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8349-PA 1..538 17..554 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:45 Download gff for BS14282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8349-RA 64..609 8..554 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:16 Download gff for BS14282.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8349-RA 64..609 8..554 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:16 Download gff for BS14282.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8215978..8216343 8..374 98 -> Plus
2L 8216403..8216582 375..554 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:45 Download gff for BS14282.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8215978..8216343 8..374 98 -> Plus
arm_2L 8216403..8216582 375..554 99   Plus

BS14282.complete Sequence

827 bp assembled on 2006-11-01

GenBank Submission: FJ637629

> BS14282.complete
GAAGTTATCAGTCGACATGTCCGAAAAGCGGAAGCTCCTTCAGCGCTACA
TGCGGAACCTGAGCGACCTACAGGATGAGCTGAAGCGAAAAGAGCTGGAG
AAGAAGATGAAGGAACTGGAAATGTTGCAGGCGAAGCTAGCTCGTCGCCA
GGAGCAATCTGGCACCAAGTGCGCTGGCGGTAAGATCAAAAACTTGCGCC
AGAAGAATCTTCGAAAGGTACTGGGAAAGTATATGATGACCTTGGAGGGA
TTTCTATGCGAGCTGGCCCGCAGGGAGGCGCGTCTAAATGGCGACAGGGG
TCGGGCTAGTGAATCCGAAAACCTGCCACATCCACAGATGTTGGAGGAGT
ACACAGTAGCGTTCTGTGCTGTTGGTGAGGATGGCCGGGAGCTGCTAGAG
GCGGCTCTTTCTGCCCGTCGATGTGCCTATGCGCCCTACAGCAAATTCAA
AGTGGGAGCAGCCTTCCGTGCGAAGTGCGGCAGGATATACGCGGGCTGCA
ACATCGAGAACGTAGCTTTCACTCCAGGCAATTGTGCGGAGCGTTGTGCC
CTGGCCAAGGGTATCAGCGAGGGCGAGAAGAAGTATACGGCGGGTGCTGT
GGTAGCCTATCACCCAGATGGGTTTACCACACCTTGCGGAGTCTGCCGGC
AGTTCATTTTGGAGTTCATCCAAAATGATATTCCTATCTACATTGCCAAG
GCTCCGCCGCCGGAGCAAGAGAACTGCATTCCTTCAATTCCGGACGAAGC
TGAAGTGCTGGTCACGTCCGCCTACCATCTGCTTCCCCACAGCTTTAACT
CATTTGAATGAAAGCTTTCTAGACCAT

BS14282.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8349-RA 795 CG8349-PA 1..795 17..811 3915 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8349-RA 928 CG8349-RA 72..868 17..813 3925 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:25:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8216402..8216841 374..813 2185 99.8 Plus
2L 23513712 2L 8215986..8216349 17..380 1760 98.9 Plus
Blast to na_te.dros performed on 2014-11-27 13:25:53 has no hits.

BS14282.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:25:11 Download gff for BS14282.complete
Subject Subject Range Query Range Percent Splice Strand
CG8349-RA 1..795 17..811 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:37 Download gff for BS14282.complete
Subject Subject Range Query Range Percent Splice Strand
CG8349-RA 64..873 8..819 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:45 Download gff for BS14282.complete
Subject Subject Range Query Range Percent Splice Strand
CG8349-RA 72..865 17..810 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:25:11 Download gff for BS14282.complete
Subject Subject Range Query Range Percent Splice Strand
CG8349-RA 64..873 8..819 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:18 Download gff for BS14282.complete
Subject Subject Range Query Range Percent Splice Strand
CG8349-RA 72..865 17..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:18 Download gff for BS14282.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8215986..8216343 17..374 99 -> Plus
2L 8216403..8216838 375..810 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:45 Download gff for BS14282.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8215986..8216343 17..374 99 -> Plus
arm_2L 8216403..8216838 375..810 99   Plus

BS14282.pep Sequence

Translation from 16 to 810

> BS14282.pep
MSEKRKLLQRYMRNLSDLQDELKRKELEKKMKELEMLQAKLARRQEQSGT
KCAGGKIKNLRQKNLRKVLGKYMMTLEGFLCELARREARLNGDRGRASES
ENLPHPQMLEEYTVAFCAVGEDGRELLEAALSARRCAYAPYSKFKVGAAF
RAKCGRIYAGCNIENVAFTPGNCAERCALAKGISEGEKKYTAGAVVAYHP
DGFTTPCGVCRQFILEFIQNDIPIYIAKAPPPEQENCIPSIPDEAEVLVT
SAYHLLPHSFNSFE*

BS14282.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8349-PA 264 CG8349-PA 1..264 1..264 1381 100 Plus
CG8353-PB 170 CG8353-PB 5..168 100..263 416 51.5 Plus
CG8353-PA 170 CG8353-PA 5..168 100..263 416 51.5 Plus
CG8360-PC 158 CG8360-PC 26..153 124..261 317 50.4 Plus
CG8360-PA 158 CG8360-PA 26..153 124..261 317 50.4 Plus