Clone BS14283 Report

Search the DGRC for BS14283

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG13494-RA
Protein status:BS14283.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14283.3prime Sequence

393 bp (393 high quality bases) assembled on 2006-10-13

> BS14283.3prime
ATGGTCTAGAAAGCTTTTAATCATCGTCCAAGGTGCAGTCCCCACAGCCG
TCGCCACAATCGCCACACCCGCCGCCATCGCCGCAACATCCACCGCCGTC
ATCGCCGCAACATCCACCGCCGCCGCCTTCACCACAACATCCTTCGTCGC
AAGCGAGGCACGCGGAGCAGGCGAGTCCGCAACAGCCGCACAGGCAGAGG
AGCGGCAGGCAGATGATGAGCAGGCAGCAGAGGAGCACCATAACAACGAT
CAGGACAATAATACCGACAGCCATGCTACCCGCCTTGGCGGCCTCTGTAG
TGGTGGTGGTGGCGATCGTGGTGCTCCATGAGGATGTTTCCGTCATCCCG
CCTTCTACCGTTGATAATGTGTCATCCATGTCGACTGATAACT

BS14283.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-PA 363 CG13494-RA 1..363 379..17 1815 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-RA 604 CG13494-RA 73..436 380..17 1820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21954410..21954773 17..380 1820 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:10:22 has no hits.

BS14283.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:51 Download gff for BS14283.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13494-PA 1..363 17..379 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:46 Download gff for BS14283.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 73..436 17..380 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:17 Download gff for BS14283.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 73..436 17..380 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:17 Download gff for BS14283.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21954410..21954773 17..380 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:46 Download gff for BS14283.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17841915..17842278 17..380 100   Plus

BS14283.5prime Sequence

393 bp (393 high quality bases) assembled on 2006-10-13

> BS14283.5prime
GAAGTTATCAGTCGACATGGATGACACATTATCAACGGTAGAAGGCGGGA
TGACGGAAACATCCTCATGGAGCACCACGATCGCCACCACCACCACTACA
GAGGCCGCCAAGGCGGGTAGCATGGCTGTCGGTATTATTGTCCTGATCGT
TGTTATGGTGCTCCTCTGCTGCCTGCTCATCATCTGCCTGCCGCTCCTCT
GCCTGTGCGGCTGTTGCGGACTCGCCTGCTCCGCGTGCCTCGCTTGCGAC
GAAGGATGTTGTGGTGAAGGCGGCGGCGGTGGATGTTGCGGCGATGACGG
CGGTGGATGTTGCGGCGATGGCGGCGGGTGTGGCGATTGTGGCGACGGCT
GTGGGGACTGCACCTTGGACGATGATTAAAAGCTTTCTAGACC

BS14283.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-PA 363 CG13494-RA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-RA 604 CG13494-RA 73..436 16..379 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21954410..21954773 379..16 1820 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:49:06 has no hits.

BS14283.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:51 Download gff for BS14283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13494-PA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:39 Download gff for BS14283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 73..436 16..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:39 Download gff for BS14283.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 73..436 16..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:39 Download gff for BS14283.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21954410..21954773 16..379 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:39 Download gff for BS14283.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17841915..17842278 16..379 100   Minus

BS14283.complete Sequence

395 bp assembled on 2006-11-01

GenBank Submission: FJ637630

> BS14283.complete
GAAGTTATCAGTCGACATGGATGACACATTATCAACGGTAGAAGGCGGGA
TGACGGAAACATCCTCATGGAGCACCACGATCGCCACCACCACCACTACA
GAGGCCGCCAAGGCGGGTAGCATGGCTGTCGGTATTATTGTCCTGATCGT
TGTTATGGTGCTCCTCTGCTGCCTGCTCATCATCTGCCTGCCGCTCCTCT
GCCTGTGCGGCTGTTGCGGACTCGCCTGCTCCGCGTGCCTCGCTTGCGAC
GAAGGATGTTGTGGTGAAGGCGGCGGCGGTGGATGTTGCGGCGATGACGG
CGGTGGATGTTGCGGCGATGGCGGCGGGTGTGGCGATTGTGGCGACGGCT
GTGGGGACTGCACCTTGGACGATGATTAAAAGCTTTCTAGACCAT

BS14283.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-RA 363 CG13494-PA 1..363 17..379 1815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-RA 604 CG13494-RA 73..436 16..379 1820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21954410..21954773 379..16 1820 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:05:07 has no hits.

BS14283.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:23 Download gff for BS14283.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 1..363 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:15:35 Download gff for BS14283.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 73..436 16..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:46:10 Download gff for BS14283.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 74..434 17..377 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:23 Download gff for BS14283.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 73..436 16..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:43 Download gff for BS14283.complete
Subject Subject Range Query Range Percent Splice Strand
CG13494-RA 74..434 17..377 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:43 Download gff for BS14283.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21954412..21954772 17..377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:46:10 Download gff for BS14283.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17841917..17842277 17..377 100   Minus

BS14283.pep Sequence

Translation from 16 to 378

> BS14283.pep
MDDTLSTVEGGMTETSSWSTTIATTTTTEAAKAGSMAVGIIVLIVVMVLL
CCLLIICLPLLCLCGCCGLACSACLACDEGCCGEGGGGGCCGDDGGGCCG
DGGGCGDCGDGCGDCTLDDD*

BS14283.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13494-PA 120 CG13494-PA 1..120 1..120 686 100 Plus