Clone BS14284 Report

Search the DGRC for BS14284

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptmTTF-RA
Protein status:BS14284.pep: full length peptide match
Sequenced Size:1265

Clone Sequence Records

BS14284.3prime Sequence

599 bp (541 high quality bases) assembled on 2006-10-13

> BS14284.3prime
ATGGTCTAGAAAGCTTTCATCCTTCTGATACACTTTGCGGATTTCTTTCA
TGGCTTATCCAGTTCTGCAAAAACTTATCGTACTCCCTCCGGCTGCGGCA
AAGAATTACAAGAGAGGAGGGTCGACAACCGTGCGATTTCAGTTCTTCCA
TGCGCTCCTTTGTGGTTTTCAGGCTGTGGCATAGAATTCGAGGATTTTGA
GCGACCTCAAATCTGGTAAACTGGGCCTCATCGAGTAGGTAGTCTAGCAC
CTCTTTGATCTTGGTAACTCGCACGGTGTGCACCTGCGGATGTTTGTCCA
TGATTGCCTTGGCTTCACTGGTGCTGAAACCAAGACGATGCGCTAAGTAT
TCCACCACGGAGGAGAACTCTCCCAAAACCTTCAGTTCGTCGAGAGAAAG
CTTCAGGGAGCGCTGCAGTATTGGCTCCGGGCAGCGCACCATCCACGGCA
TGATCTTGTCCTTTTTCGCCCGCTTGGCGCGCTCCAAACGCAACTGAACA
GACTTTGGAGTATAGCGAAAGGCCCATAGATCCTTGAGTACGTTTATTGG
CGACACATTGTAGTCGATCATGTGCTGCAGGTTCTTTTTCAACATCTCG

BS14284.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18124-PA 1233 mTTF-RA 651..1233 599..17 2865 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
mTTF-RA 1433 CG18124-RA 735..1317 599..17 2885 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14347653..14347992 260..599 1670 99.4 Plus
2L 23513712 2L 14347355..14347599 17..261 1225 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:27:46 has no hits.

BS14284.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:52 Download gff for BS14284.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18124-PA 651..1233 17..599 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:27 Download gff for BS14284.3prime
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 735..1317 17..599 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:44 Download gff for BS14284.3prime
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 735..1317 17..599 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:44 Download gff for BS14284.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14347355..14347597 17..259 100 <- Plus
2L 14347653..14347992 260..599 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:27 Download gff for BS14284.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14347355..14347597 17..259 100 <- Plus
arm_2L 14347653..14347992 260..599 99   Plus

BS14284.5prime Sequence

612 bp (547 high quality bases) assembled on 2006-10-13

> BS14284.5prime
GAAGTTATCAGTCGACATGATTAGAAGCCTTCTGCGCAGCTTTGAGACGG
CACTCAAGCTGCATGCCGGCTTAAATATGCACCCAATGCACTGCAGCAGG
CGCCTACTCTTCTCGCAGTACGAAAACCGCGCCAGTCCGAGCAGACTGAC
CTCCAGTGGCACTTTAGGTAGCAACGAGGCGGAAAACGATTATGTGCCTT
ATCGCCAGGATCGGGAGACTGGAACCAAGACGCGGGTGCTCCTCGAAGCT
CTGCGGGAACGTTTTCGCTTCACGGACGCTGAGCTCCAAAAGATAATCAG
CGACGAGCTGGTGCACCGCTGCTACCGCGGTAGATCACTGACTCTGGTCA
TGGACACACTGCAGCTAGAGGGCGTTAGCAGGCGCAGCTTCGTGGAGTAT
CCTTGGCTACTGTCGCTGGACAATAAACGCTTGGAGCTAAAGATGCAGCT
ACTCAAGTCAATGGACTTTAAGGACATCAATCATTTTGTGCCTTTCCTGC
GCCTCACTGTTCCACGTCTTCGAAAACTGGTGGGTGCTCTGAACTCTGAG
AGGGATGCAATGCCACAGCGAAATCGTGTCTACTATATCAACGAAAAACT
GGATGTCAGCCC

BS14284.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18124-PA 1233 mTTF-RA 1..596 17..612 2930 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
mTTF-RA 1433 CG18124-RA 85..680 17..612 2950 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14348298..14348706 425..17 2045 100 Minus
2L 23513712 2L 14348047..14348233 612..426 905 98.9 Minus
Blast to na_te.dros performed on 2015-02-10 18:27:57 has no hits.

BS14284.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:52 Download gff for BS14284.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18124-PA 1..596 17..612 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:29 Download gff for BS14284.5prime
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 80..680 12..612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:55 Download gff for BS14284.5prime
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 80..680 12..612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:55 Download gff for BS14284.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14348047..14348233 426..612 98 <- Minus
2L 14348298..14348711 12..425 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:29 Download gff for BS14284.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14348047..14348233 426..612 98 <- Minus
arm_2L 14348298..14348711 12..425 99   Minus

BS14284.complete Sequence

1265 bp assembled on 2009-12-07

GenBank Submission: KX803787

> BS14284.complete
GAAGTTATCAGTCGACATGATTAGAAGCCTTCTGCGCAGCTTTGAGACGG
CACTCAAGCTGCATGCCGGCTTAAATATGCACCCAATGCACTGCAGCAGG
CGCCTACTCTTCTCGCAGTACGAAAACCGCGCCAGTCCGAGCAGACTGAC
CTCCAGTGGCACTTTAGGTAGCAACGAGGCGGAAAACGATTATGTGCCTT
ATCGCCAGGATCGGGAGACTGGAACCAAGACGCGGGTGCTCCTCGAAGCT
CTGCGGGAACGTTTTCGCTTCACGGACGCTGAGCTCCAAAAGATAATCAG
CGACGAGCTGGTGCACCGCTGCTACCGCGGTAGATCACTGACTCTGGTCA
TGGACACACTGCAGCTAGAGGGCGTTAGCAGGCGCAGCTTCGTGGAGTAT
CCTTGGCTACTGTCGCTGGACAATAAACGCTTGGAGCTAAAGATGCAGCT
ACTCAAGTCAATGGACTTTAAGGACATCAATCATTTTGTGCCTTTCCTGC
GCCTCACTGTTCCACGTCTTCGAAAACTGGTGGGTGCTCTGAACTCTGAG
AGGGATGCAATGCCACAGCGAAATCGTGTCTACTATATCAGCGAAAAGCT
GGATGTCAGCCCCGATATTGTGAGCAAATATCTATCGAAGAGGCTGTTTA
TCCTGGAAATGCCGTTCGAGATGTTCGAAAAGAACCTGCAGCACATGATC
GACTACAATGTGTCGCCAATAAACGTACTCAAGGATCTATGGGCCTTTCG
CTATACTCCAAAGTCTGTTCAGTTGCGTTTGGAGCGCGCCAAGCGGGCGA
AAAAGGACAAGATCATGCCGTGGATGGTGCGCTGCCCGGAGCCAATACTG
CAGCGCTCCCTGAAGCTTTCTCTCGACGAACTGAAGGTTTTGGGAGAGTT
CTCCTCCGTGGTGGAATACTTAGCGCATCGTCTTGGTTTCAGCACCAGTG
AAGCCAAGGCAATCATGGACAAACATCCGCAGGTGCACACCGTGCGAGTT
ACCAAGATCAAAGAGGTGCTAGACTACCTACTCGATGAGGCCCAGTTTAC
CAGATTTGAGGTCGCTCAAAATCCTCGAATTCTATGCCACAGCCTGAAAA
CCACAAAGGAGCGCATGGAAGAACTGAAATCGCACGGTTGTCGACCCTCC
TCTCTTGTAATTCTTTGCCGCAGCCGGAGGGAGTACGATAAGTTTTTGCA
GAACTGGATAAGCCATGAAAGAAATCCGCAAAGTGTATCAGAAGGATGAA
AGCTTTCTAGACCAT

BS14284.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
mTTF-RA 1233 CG18124-PA 1..1233 17..1249 6165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
mTTF-RA 1433 CG18124-RA 85..1317 17..1249 6165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14347653..14348233 1006..426 2905 100 Minus
2L 23513712 2L 14348298..14348706 425..17 2045 100 Minus
2L 23513712 2L 14347355..14347599 1249..1005 1225 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:29:53 has no hits.

BS14284.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:46 Download gff for BS14284.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 113..1344 17..1248 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:35 Download gff for BS14284.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 85..1316 17..1248 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:28 Download gff for BS14284.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 113..1344 17..1248 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:41 Download gff for BS14284.complete
Subject Subject Range Query Range Percent Splice Strand
mTTF-RA 85..1316 17..1248 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:41 Download gff for BS14284.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14347356..14347597 1007..1248 100 <- Minus
2L 14347653..14348233 426..1006 100 <- Minus
2L 14348298..14348706 17..425 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:35 Download gff for BS14284.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14347356..14347597 1007..1248 100 <- Minus
arm_2L 14347653..14348233 426..1006 100 <- Minus
arm_2L 14348298..14348706 17..425 100   Minus

BS14284.pep Sequence

Translation from 16 to 1248

> BS14284.pep
MIRSLLRSFETALKLHAGLNMHPMHCSRRLLFSQYENRASPSRLTSSGTL
GSNEAENDYVPYRQDRETGTKTRVLLEALRERFRFTDAELQKIISDELVH
RCYRGRSLTLVMDTLQLEGVSRRSFVEYPWLLSLDNKRLELKMQLLKSMD
FKDINHFVPFLRLTVPRLRKLVGALNSERDAMPQRNRVYYISEKLDVSPD
IVSKYLSKRLFILEMPFEMFEKNLQHMIDYNVSPINVLKDLWAFRYTPKS
VQLRLERAKRAKKDKIMPWMVRCPEPILQRSLKLSLDELKVLGEFSSVVE
YLAHRLGFSTSEAKAIMDKHPQVHTVRVTKIKEVLDYLLDEAQFTRFEVA
QNPRILCHSLKTTKERMEELKSHGCRPSSLVILCRSRREYDKFLQNWISH
ERNPQSVSEG*

BS14284.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
mTTF-PA 410 CG18124-PA 1..410 1..410 2107 100 Plus