Clone Sequence Records
BS14284.3prime Sequence
599 bp (541 high quality bases) assembled on 2006-10-13
> BS14284.3prime
ATGGTCTAGAAAGCTTTCATCCTTCTGATACACTTTGCGGATTTCTTTCA
TGGCTTATCCAGTTCTGCAAAAACTTATCGTACTCCCTCCGGCTGCGGCA
AAGAATTACAAGAGAGGAGGGTCGACAACCGTGCGATTTCAGTTCTTCCA
TGCGCTCCTTTGTGGTTTTCAGGCTGTGGCATAGAATTCGAGGATTTTGA
GCGACCTCAAATCTGGTAAACTGGGCCTCATCGAGTAGGTAGTCTAGCAC
CTCTTTGATCTTGGTAACTCGCACGGTGTGCACCTGCGGATGTTTGTCCA
TGATTGCCTTGGCTTCACTGGTGCTGAAACCAAGACGATGCGCTAAGTAT
TCCACCACGGAGGAGAACTCTCCCAAAACCTTCAGTTCGTCGAGAGAAAG
CTTCAGGGAGCGCTGCAGTATTGGCTCCGGGCAGCGCACCATCCACGGCA
TGATCTTGTCCTTTTTCGCCCGCTTGGCGCGCTCCAAACGCAACTGAACA
GACTTTGGAGTATAGCGAAAGGCCCATAGATCCTTGAGTACGTTTATTGG
CGACACATTGTAGTCGATCATGTGCTGCAGGTTCTTTTTCAACATCTCG
BS14284.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 23:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18124-PA | 1233 | mTTF-RA | 651..1233 | 599..17 | 2865 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTTF-RA | 1433 | CG18124-RA | 735..1317 | 599..17 | 2885 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14347653..14347992 | 260..599 | 1670 | 99.4 | Plus |
2L | 23513712 | 2L | 14347355..14347599 | 17..261 | 1225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:27:46 has no hits.
BS14284.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:52 Download gff for
BS14284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18124-PA | 651..1233 | 17..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:27 Download gff for
BS14284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTTF-RA | 735..1317 | 17..599 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:44 Download gff for
BS14284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTTF-RA | 735..1317 | 17..599 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:44 Download gff for
BS14284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14347355..14347597 | 17..259 | 100 | <- | Plus |
2L | 14347653..14347992 | 260..599 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:27 Download gff for
BS14284.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14347355..14347597 | 17..259 | 100 | <- | Plus |
arm_2L | 14347653..14347992 | 260..599 | 99 | | Plus |
BS14284.5prime Sequence
612 bp (547 high quality bases) assembled on 2006-10-13
> BS14284.5prime
GAAGTTATCAGTCGACATGATTAGAAGCCTTCTGCGCAGCTTTGAGACGG
CACTCAAGCTGCATGCCGGCTTAAATATGCACCCAATGCACTGCAGCAGG
CGCCTACTCTTCTCGCAGTACGAAAACCGCGCCAGTCCGAGCAGACTGAC
CTCCAGTGGCACTTTAGGTAGCAACGAGGCGGAAAACGATTATGTGCCTT
ATCGCCAGGATCGGGAGACTGGAACCAAGACGCGGGTGCTCCTCGAAGCT
CTGCGGGAACGTTTTCGCTTCACGGACGCTGAGCTCCAAAAGATAATCAG
CGACGAGCTGGTGCACCGCTGCTACCGCGGTAGATCACTGACTCTGGTCA
TGGACACACTGCAGCTAGAGGGCGTTAGCAGGCGCAGCTTCGTGGAGTAT
CCTTGGCTACTGTCGCTGGACAATAAACGCTTGGAGCTAAAGATGCAGCT
ACTCAAGTCAATGGACTTTAAGGACATCAATCATTTTGTGCCTTTCCTGC
GCCTCACTGTTCCACGTCTTCGAAAACTGGTGGGTGCTCTGAACTCTGAG
AGGGATGCAATGCCACAGCGAAATCGTGTCTACTATATCAACGAAAAACT
GGATGTCAGCCC
BS14284.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18124-PA | 1233 | mTTF-RA | 1..596 | 17..612 | 2930 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTTF-RA | 1433 | CG18124-RA | 85..680 | 17..612 | 2950 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14348298..14348706 | 425..17 | 2045 | 100 | Minus |
2L | 23513712 | 2L | 14348047..14348233 | 612..426 | 905 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:27:57 has no hits.
BS14284.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:52 Download gff for
BS14284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18124-PA | 1..596 | 17..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:29 Download gff for
BS14284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTTF-RA | 80..680 | 12..612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:55 Download gff for
BS14284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTTF-RA | 80..680 | 12..612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:55 Download gff for
BS14284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14348047..14348233 | 426..612 | 98 | <- | Minus |
2L | 14348298..14348711 | 12..425 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:29 Download gff for
BS14284.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14348047..14348233 | 426..612 | 98 | <- | Minus |
arm_2L | 14348298..14348711 | 12..425 | 99 | | Minus |
BS14284.complete Sequence
1265 bp assembled on 2009-12-07
GenBank Submission: KX803787
> BS14284.complete
GAAGTTATCAGTCGACATGATTAGAAGCCTTCTGCGCAGCTTTGAGACGG
CACTCAAGCTGCATGCCGGCTTAAATATGCACCCAATGCACTGCAGCAGG
CGCCTACTCTTCTCGCAGTACGAAAACCGCGCCAGTCCGAGCAGACTGAC
CTCCAGTGGCACTTTAGGTAGCAACGAGGCGGAAAACGATTATGTGCCTT
ATCGCCAGGATCGGGAGACTGGAACCAAGACGCGGGTGCTCCTCGAAGCT
CTGCGGGAACGTTTTCGCTTCACGGACGCTGAGCTCCAAAAGATAATCAG
CGACGAGCTGGTGCACCGCTGCTACCGCGGTAGATCACTGACTCTGGTCA
TGGACACACTGCAGCTAGAGGGCGTTAGCAGGCGCAGCTTCGTGGAGTAT
CCTTGGCTACTGTCGCTGGACAATAAACGCTTGGAGCTAAAGATGCAGCT
ACTCAAGTCAATGGACTTTAAGGACATCAATCATTTTGTGCCTTTCCTGC
GCCTCACTGTTCCACGTCTTCGAAAACTGGTGGGTGCTCTGAACTCTGAG
AGGGATGCAATGCCACAGCGAAATCGTGTCTACTATATCAGCGAAAAGCT
GGATGTCAGCCCCGATATTGTGAGCAAATATCTATCGAAGAGGCTGTTTA
TCCTGGAAATGCCGTTCGAGATGTTCGAAAAGAACCTGCAGCACATGATC
GACTACAATGTGTCGCCAATAAACGTACTCAAGGATCTATGGGCCTTTCG
CTATACTCCAAAGTCTGTTCAGTTGCGTTTGGAGCGCGCCAAGCGGGCGA
AAAAGGACAAGATCATGCCGTGGATGGTGCGCTGCCCGGAGCCAATACTG
CAGCGCTCCCTGAAGCTTTCTCTCGACGAACTGAAGGTTTTGGGAGAGTT
CTCCTCCGTGGTGGAATACTTAGCGCATCGTCTTGGTTTCAGCACCAGTG
AAGCCAAGGCAATCATGGACAAACATCCGCAGGTGCACACCGTGCGAGTT
ACCAAGATCAAAGAGGTGCTAGACTACCTACTCGATGAGGCCCAGTTTAC
CAGATTTGAGGTCGCTCAAAATCCTCGAATTCTATGCCACAGCCTGAAAA
CCACAAAGGAGCGCATGGAAGAACTGAAATCGCACGGTTGTCGACCCTCC
TCTCTTGTAATTCTTTGCCGCAGCCGGAGGGAGTACGATAAGTTTTTGCA
GAACTGGATAAGCCATGAAAGAAATCCGCAAAGTGTATCAGAAGGATGAA
AGCTTTCTAGACCAT
BS14284.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTTF-RA | 1233 | CG18124-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTTF-RA | 1433 | CG18124-RA | 85..1317 | 17..1249 | 6165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14347653..14348233 | 1006..426 | 2905 | 100 | Minus |
2L | 23513712 | 2L | 14348298..14348706 | 425..17 | 2045 | 100 | Minus |
2L | 23513712 | 2L | 14347355..14347599 | 1249..1005 | 1225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:29:53 has no hits.
BS14284.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:50:46 Download gff for
BS14284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTTF-RA | 113..1344 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:15:35 Download gff for
BS14284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTTF-RA | 85..1316 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:14:28 Download gff for
BS14284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTTF-RA | 113..1344 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:41 Download gff for
BS14284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mTTF-RA | 85..1316 | 17..1248 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:41 Download gff for
BS14284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14347356..14347597 | 1007..1248 | 100 | <- | Minus |
2L | 14347653..14348233 | 426..1006 | 100 | <- | Minus |
2L | 14348298..14348706 | 17..425 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:15:35 Download gff for
BS14284.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14347356..14347597 | 1007..1248 | 100 | <- | Minus |
arm_2L | 14347653..14348233 | 426..1006 | 100 | <- | Minus |
arm_2L | 14348298..14348706 | 17..425 | 100 | | Minus |
BS14284.pep Sequence
Translation from 16 to 1248
> BS14284.pep
MIRSLLRSFETALKLHAGLNMHPMHCSRRLLFSQYENRASPSRLTSSGTL
GSNEAENDYVPYRQDRETGTKTRVLLEALRERFRFTDAELQKIISDELVH
RCYRGRSLTLVMDTLQLEGVSRRSFVEYPWLLSLDNKRLELKMQLLKSMD
FKDINHFVPFLRLTVPRLRKLVGALNSERDAMPQRNRVYYISEKLDVSPD
IVSKYLSKRLFILEMPFEMFEKNLQHMIDYNVSPINVLKDLWAFRYTPKS
VQLRLERAKRAKKDKIMPWMVRCPEPILQRSLKLSLDELKVLGEFSSVVE
YLAHRLGFSTSEAKAIMDKHPQVHTVRVTKIKEVLDYLLDEAQFTRFEVA
QNPRILCHSLKTTKERMEELKSHGCRPSSLVILCRSRREYDKFLQNWISH
ERNPQSVSEG*
BS14284.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mTTF-PA | 410 | CG18124-PA | 1..410 | 1..410 | 2107 | 100 | Plus |