Clone Sequence Records
BS14288.3prime Sequence
512 bp (461 high quality bases) assembled on 2006-10-13
> BS14288.3prime
ATGGTCTAGAAAGCTTTCAGCTTAAAACTTCTGGCTTTTGCGGCAGCGCT
GGAACGTACGAGCTGGCCGTCGATGTTGTTAGTGAGGATTGTCGCTGTTT
CTTGCTTTCGTCTGATTTCAGAAGGGTGCCCAGAACAATGCCGAGGAAGA
GAATGAGTCCTACTTGGTGGTTCGATATGAACTTTTTGGCGCAGTCGCTG
GGGTTGTCAATGTTGAGGGAATAGATCTGCTGCACCAGATGGGCACCCAC
TACTCCAACAGCCGCGTAGTACGGCACCGTTTGATCGCAAGCCCAGCCGG
CGGCAGAAAGACCCGTCAGCATTGCTGCCGTGAATCCCGACAGCCAGACC
TTGGTGTTCTCCCCAAATCGAAGTGCCGTGGACTTCACACCGATCTGCAG
GTCATCCAGCTTGTCCTGGTGGGCGTATATCGTGTCGTAGACAATGGTCC
AACAGACGCCGGAGAGGTAGAGTGGCAAGCAGGCGGCAAGGTTGACACTG
CCCTGGGTGGCA
BS14288.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9613-PA | 1179 | CG9613-RA | 684..1179 | 512..17 | 2480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-RA | 1643 | CG9613-RA | 778..1273 | 512..17 | 2480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8315422..8315707 | 227..512 | 1430 | 100 | Plus |
| 3R | 32079331 | 3R | 8315154..8315366 | 17..229 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:24:42 has no hits.
BS14288.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:54 Download gff for
BS14288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9613-PA | 685..1179 | 17..511 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:39:13 Download gff for
BS14288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 779..1273 | 17..511 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:57 Download gff for
BS14288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 779..1273 | 17..511 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:57 Download gff for
BS14288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8315154..8315363 | 17..226 | 100 | <- | Plus |
| 3R | 8315422..8315706 | 227..511 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:39:13 Download gff for
BS14288.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4140876..4141085 | 17..226 | 100 | <- | Plus |
| arm_3R | 4141144..4141428 | 227..511 | 100 | | Plus |
BS14288.5prime Sequence
533 bp (460 high quality bases) assembled on 2006-10-13
> BS14288.5prime
GAAGTTATCAGTCGACATGTATGCGCTTCGACACCTGCGACTCCAGAGCG
CTAGGCACTTCCGCAGCTCTTATGCAGCGGCGGCAACAACAAAACACATG
CTGCCCCGGCAACCAGCGCGTGTTCTGATTGGAGATTGGAGCACTTGGGA
TAAGTCCCGGCTGCAGGATGTATGCTCCAGGAGTTCGAGTACCGCCACTG
AGCCCGTGAAGCAGCAAACGCCGCTGCAGGAACTCGTGTCGGCCGCCAAA
CCCTATGCCCAACTAATGCGAATCGACCGGCCTATTGGCACCTACCTCCT
TTTCTGGCCTTGCGCCTGGAGCATAGCGCTCAGCGCGGATGCGGGCTGCT
GGCCGGACCTCACCATGCTGGGTCTGTTCGGCACCGGGGCACTGATAATG
CGCGGCGCCGGGTGCACTATCAACGATCTCTGGGACAAGGACATCGATGC
CAAAGTGGAGCGCACGAAGTTGCGGCCCTTGGCCTCGGGTCAGATCAGTC
AGTTCGATGCCATAGTATTCCTCTCGGCGCAAC
BS14288.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9613-PA | 1179 | CG9613-RA | 1..515 | 17..531 | 2525 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-RA | 1643 | CG9613-RA | 95..609 | 17..531 | 2545 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8315876..8316390 | 531..17 | 2545 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:46:13 has no hits.
BS14288.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:55 Download gff for
BS14288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9613-PA | 1..517 | 17..533 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:52 Download gff for
BS14288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 89..611 | 7..533 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:02 Download gff for
BS14288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 89..611 | 7..533 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:02 Download gff for
BS14288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8315874..8316396 | 7..533 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:52 Download gff for
BS14288.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4141596..4142118 | 7..533 | 98 | | Minus |
BS14288.complete Sequence
1211 bp assembled on 2010-01-09
GenBank Submission: KX801750
> BS14288.complete
GAAGTTATCAGTCGACATGTATGCGCTTCGACACCTGCGACTCCAGAGCG
CTAGGCACTTCCGCAGCTCTTATGCAGCGGCGGCAACAACAAAACACATG
CTGCCCCGGCAACCAGCGCGTGTTCTGATTGGAGATTGGAGCACTTGGGA
TAAGTCCCGGCTGCAGGATGTATGCTCCAGGAGTTCGAGTACCGCCACTG
AGCCCGTGAAGCAGCAAACGCCGCTGCAGGAACTCGTGTCGGCCGCCAAA
CCCTATGCCCAACTAATGCGAATCGACCGGCCTATTGGCACCTACCTCCT
TTTCTGGCCTTGCGCCTGGAGCATAGCGCTCAGCGCGGATGCGGGCTGCT
GGCCGGACCTCACCATGCTGGGTCTGTTCGGCACCGGGGCACTGATAATG
CGCGGCGCCGGGTGCACTATCAACGATCTCTGGGACAAGGACATCGATGC
CAAAGTGGAGCGCACGAGGTTGCGGCCCTTGGCCTCGGGTCAGATCAGTC
AGTTCGATGCCATAGTATTCCTCTCGGCGCAGCTCAGTCTGGGTCTTTTG
GTGCTGGTCCAGCTCAACTGGCAATCCATATTGTTGGGCGCCAGTTCGCT
GGGCCTCGTGATCACGTATCCGCTGATGAAAAGAGTCACCTACTGGCCCC
AGCTGGTTCTGGGCATGGCCTTCAATTGGGGCGCCCTACTGGGCTGGTGT
GCCACCCAGGGCAGTGTCAACCTTGCCGCCTGCTTGCCACTCTACCTCTC
CGGCGTCTGTTGGACCATTGTCTACGACACGATATACGCCCACCAGGACA
AGCTGGATGACCTGCAGATCGGTGTGAAGTCCACGGCACTTCGATTTGGG
GAGAACACCAAGGTCTGGCTGTCGGGATTCACGGCAGCAATGCTGACGGG
TCTTTCTGCCGCCGGCTGGGCTTGCGATCAAACGGTGCCGTACTACGCGG
CTGTTGGAGTAGTGGGTGCCCATCTGGTGCAGCAGATCTATTCCCTCAAC
ATTGACAACCCCAGCGACTGCGCCAAAAAGTTCATATCGAACCACCAAGT
AGGACTCATTCTCTTCCTCGGCATTGTTCTGGGCACCCTTCTGAAATCAG
ACGAAAGCAAGAAACAGCGACAATCCTCACTAACAACATCGACGGCCAGC
TCGTACGTTCCAGCGCTGCCGCAAAAGCCAGAAGTTTTAAGCTGAAAGCT
TTCTAGACCAT
BS14288.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-RA | 1179 | CG9613-PA | 1..1179 | 17..1195 | 5880 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-RA | 1643 | CG9613-RA | 95..1273 | 17..1195 | 5880 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8315422..8316390 | 985..17 | 4830 | 99.9 | Minus |
| 3R | 32079331 | 3R | 8315154..8315366 | 1195..983 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:55:35 has no hits.
BS14288.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:50 Download gff for
BS14288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 47..1224 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:30:31 Download gff for
BS14288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 95..1272 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:28 Download gff for
BS14288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 47..1224 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:53 Download gff for
BS14288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 95..1272 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:53 Download gff for
BS14288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8315155..8315363 | 986..1194 | 100 | <- | Minus |
| 3R | 8315422..8316390 | 17..985 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:30:31 Download gff for
BS14288.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4140877..4141085 | 986..1194 | 100 | <- | Minus |
| arm_3R | 4141144..4142112 | 17..985 | 99 | | Minus |
BS14288.pep Sequence
Translation from 16 to 1194
> BS14288.pep
MYALRHLRLQSARHFRSSYAAAATTKHMLPRQPARVLIGDWSTWDKSRLQ
DVCSRSSSTATEPVKQQTPLQELVSAAKPYAQLMRIDRPIGTYLLFWPCA
WSIALSADAGCWPDLTMLGLFGTGALIMRGAGCTINDLWDKDIDAKVERT
RLRPLASGQISQFDAIVFLSAQLSLGLLVLVQLNWQSILLGASSLGLVIT
YPLMKRVTYWPQLVLGMAFNWGALLGWCATQGSVNLAACLPLYLSGVCWT
IVYDTIYAHQDKLDDLQIGVKSTALRFGENTKVWLSGFTAAMLTGLSAAG
WACDQTVPYYAAVGVVGAHLVQQIYSLNIDNPSDCAKKFISNHQVGLILF
LGIVLGTLLKSDESKKQRQSSLTTSTASSYVPALPQKPEVLS*
BS14288.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-PA | 392 | CG9613-PA | 1..392 | 1..392 | 2041 | 100 | Plus |
