Clone BS14289 Report

Search the DGRC for BS14289

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:142
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG12362-RA
Protein status:BS14289.pep: full length peptide match
Sequenced Size:1568

Clone Sequence Records

BS14289.3prime Sequence

538 bp (453 high quality bases) assembled on 2006-10-13

> BS14289.3prime
ATGGTCTAGAAAGCTTTTATGTAGTGGTCTCTTCTTTAAATTCCCACCAG
TCATTTTCGTATCCCTCCCTCACATGGCAAAGGAGGACATGTCGTCGTTT
TTGGCAATAGTGCGATAAGTCCAGAACCTTTTGTTTAACTTCATAGATAT
TCTTGACAGTGATCTCTCGCTCCAAGCACTCGGACAGCTTTTCTGTGGCC
ATTTCCATGTCCTTCTGATTATCCTCGAATATGATCTTCTGATTGTTGTT
CATCAAATAAAATGCAAACACATAGCTGTACATCAGAGTGGTTCGACATT
GGCATAAGACATCGACGGCATCACGCAGAAACTGAACCTCAATCCAGCTC
ATCTCCTCCTGCATGTCATCCATTTTGGCCTGAATATTGGAATATAATTT
ATTTTCCATTTTCAAACTTTGCATGTGGTTGCTATAACGATTGTAATAGT
GCAGATATCGGGCCATTGAAGAGCGATATTTTTGCTGAGCCAATCTGGCC
TGTTTTCGCTTCTTCCTCGTCGAAGCGATTGCAACTGT

BS14289.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-PB 1536 CG12362-RB 1016..1536 538..17 2545 99.6 Minus
CG12362-PA 1536 CG12362-RA 1016..1536 538..17 2545 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-RA 1897 CG12362-RA 1175..1696 538..16 2575 99.6 Minus
CG12362-RB 1957 CG12362-RB 1235..1756 538..16 2575 99.6 Minus
ari-1-RF 3350 CG5659-RF 1717..2048 533..204 215 72.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10414052..10414573 538..16 2550 99.6 Minus
X 23542271 X 18133053..18133138 204..289 190 81.4 Plus
Blast to na_te.dros performed on 2015-02-10 15:25:08 has no hits.

BS14289.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:55 Download gff for BS14289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12362-PA 1016..1536 17..538 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:39:18 Download gff for BS14289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 1235..1756 16..538 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:00 Download gff for BS14289.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 1235..1756 16..538 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:00 Download gff for BS14289.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10414052..10414573 16..538 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:39:18 Download gff for BS14289.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10407152..10407673 16..538 99   Minus

BS14289.5prime Sequence

583 bp (506 high quality bases) assembled on 2006-10-13

> BS14289.5prime
GAAGTTATCAGTCGACATGAATTCCGAAATGGAATTCTCGGATGAGGACC
ACGGTGACTCGCATCGGTCGCTTCTCACTCACATGAGTTGCGAAAATGAC
AGCGACAGCGAGGACACCTGCACGGAAATCCTTTTGCCGGAAAATTCCAA
CAGTCCCGAAACGGAGGACTTTGTGTACAAGGTCCTTTCGGTGGACCAGA
TTGTTCAGCATCAGCGTAACATCATCGATGAGGTGAATAATGTCCTGAAT
TTGCCACCGCAAGTCACGCGTATTATCCTAAATCACTTCAAATGGGACAA
AGAGAGCTTGTTCGAAAATTATTTCGAGAGCAATCCGAAGGACTTCTTTC
AGCGTGCCCATGTGTTGAATCCCTTTGAGAAGAAGATTGAACGCGAGTCT
GCGGCGTCTACATCCTGTGCCATACCTCAGCTCTGTGGCATTTGCTTTTG
TTCTTGCGATGAGCTCATAGGTTTGGGCTGTGGTCACAACTTTTGTGCCG
CCTGCTGGAAACAATATTTGGCCAATAAGACGTGTAGCGAGGGCTTGGCC
AATACCATCAAATGTCCAGCGGCCCACTGCGAG

BS14289.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-PB 1536 CG12362-RB 1..567 17..583 2810 99.8 Plus
CG12362-PA 1536 CG12362-RA 1..567 17..583 2810 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-RA 1897 CG12362-RA 160..726 17..583 2820 99.8 Plus
CG12362-RB 1957 CG12362-RB 220..786 17..583 2820 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10413037..10413603 17..583 2820 99.8 Plus
Blast to na_te.dros performed 2015-02-13 01:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6386..6524 532..393 130 58.7 Minus

BS14289.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:55 Download gff for BS14289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12362-PA 1..567 17..583 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:10:51 Download gff for BS14289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 215..786 11..583 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:56 Download gff for BS14289.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 215..786 11..583 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:56 Download gff for BS14289.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10413032..10413603 11..583 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:10:51 Download gff for BS14289.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10406132..10406703 11..583 99   Plus

BS14289.complete Sequence

1568 bp assembled on 2009-12-07

GenBank Submission: KX804013

> BS14289.complete
GAAGTTATCAGTCGACATGAATTCCGAAATGGAATTCTCGGATGAGGACC
ACGGTGACTCGCATCGGTCGCTTCTCACTCACATGAGTTGCGAAAATGAC
AGCGACAGCGAGGACACCTGCACGGAAATCCTTTTGCCGGAAAATTCCAA
CAGTCCCGAAACGGAGGACTTTGTGTACAAGGTCCTTTCGGTGGACCAGA
TTGTTCAGCATCAGCGTAACATCATCGATGAGGTGAATAATGTCCTGAAT
TTGCCACCGCAAGTCACGCGTATTATCCTAAATCACTTCAAATGGGACAA
AGAGAGCTTGTTCGAAAATTATTTCGAGAGCAATCCGAAGGACTTCTTTC
AGCGTGCCCATGTGTTGAATCCCTTTGAGAAGAAGATTGAACGCGAGTCT
GCGGCGTCTACATCCTGTGCCATACCTCAGCTCTGTGGCATTTGCTTTTG
TTCTTGCGATGAGCTCATAGGTTTGGGCTGTGGTCACAACTTTTGTGCCG
CCTGCTGGAAACAATATTTGGCCAATAAGACGTGTAGCGAGGGCTTGGCC
AATACCATCAAATGTCCAGCGGCCAACTGCGAGATCCTGGTGGATTATAT
ATCCTTTCTGAAACTTGCCGATGATTCAGAGGTTGTCGAGCGATATCAGC
AGCTCATCACCAACACGTTTGTGGAATGCAACATGCTGATGCGATGGTGC
CCCGCCCCCAATTGCAGCCATGCCGTCAAGGCCGTTTGTGCTGAACCACG
AGCAGTCCTTTGCAAATGTGGGCATGAGTTTTGCTTTGCTTGTGGCGAAA
ATTGGCATGAACCCGCCAGCTGCAGTTCGCTCAAGAAGTGGGTGAAAAAA
TGTCTTGAGGACTCGGAGACATCGAATTGGATTGCCCAGAACACGAAGGA
GTGTCCCAAGTGCAATGTTACCATCGAGAAGGATGGTGGTTGCAATCATA
TGGTATGCAAGAATCCATCCTGCCGTTATGATTTCTGCTGGGTATGCCTT
GGATCCTGGGAGCCACATGGTTCGTCCTGGTACAGTTGCAATCGCTTCGA
CGAGGAGGAAGCGAAACAGGCCAGATTGGCTCAGCAAAAATATCGCTCTT
CAATGGCCCGATATCTGCACTATTACAATCGTTATAGCAACCACATGCAA
AGTTTGAAAATGGAAAATAAATTATATTCCAATATTCAGGCCAAAATGGA
TGACATGCAGGAGGAGATGAGCTGGATTGAGGTTCAGTTTCTGCGTGATG
CCGTCGATGTCTTATGCCAATGTCGAACCACTCTGATGTACAGCTATGTG
TTTGCATTTTATTTGATGAACAACAATCAGAAGATCATATTCGAGGATAA
TCAGAAGGACATGGAAATGGCCACAGAAAAGCTGTCCGAGTGCTTGGAGC
GAGAGATCACTGTCAAGAATATCTATGAAGTTAAACAAAAGGTTCTGGAC
TTATCGCACTATTGCCAAAAACGACGACATGTCCTCCTTTGCCATGTGAG
GGAGGGATACGAAAATGACTGGTGGGAATTTAAAGAAGAGACCACTACAT
AAAAGCTTTCTAGACCAT

BS14289.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-RA 1536 CG12362-PA 1..1536 17..1552 7680 100 Plus
CG12362-RB 1536 CG12362-PB 1..1536 17..1552 7680 100 Plus
ari-1-RF 1512 CG5659-PF 616..1337 647..1365 590 72.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-RA 1897 CG12362-RA 160..1696 17..1553 7685 100 Plus
CG12362-RB 1957 CG12362-RB 220..1756 17..1553 7685 100 Plus
ari-1-RF 3350 CG5659-RF 1327..2048 647..1365 590 72.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10413037..10414573 17..1553 7685 100 Plus
X 23542271 X 18133765..18134174 1056..647 490 74.6 Minus
X 23542271 X 18133053..18133138 1365..1280 190 81.4 Minus
Blast to na_te.dros performed 2014-11-28 02:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6386..6524 532..393 130 58.7 Minus

BS14289.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:36 Download gff for BS14289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RA 158..1691 17..1550 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:11 Download gff for BS14289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 220..1753 17..1550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:31 Download gff for BS14289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RA 158..1691 17..1550 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:49 Download gff for BS14289.complete
Subject Subject Range Query Range Percent Splice Strand
CG12362-RB 220..1753 17..1550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:49 Download gff for BS14289.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10413037..10414570 17..1550 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:11 Download gff for BS14289.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10406137..10407670 17..1550 100   Plus

BS14289.pep Sequence

Translation from 16 to 1551

> BS14289.pep
MNSEMEFSDEDHGDSHRSLLTHMSCENDSDSEDTCTEILLPENSNSPETE
DFVYKVLSVDQIVQHQRNIIDEVNNVLNLPPQVTRIILNHFKWDKESLFE
NYFESNPKDFFQRAHVLNPFEKKIERESAASTSCAIPQLCGICFCSCDEL
IGLGCGHNFCAACWKQYLANKTCSEGLANTIKCPAANCEILVDYISFLKL
ADDSEVVERYQQLITNTFVECNMLMRWCPAPNCSHAVKAVCAEPRAVLCK
CGHEFCFACGENWHEPASCSSLKKWVKKCLEDSETSNWIAQNTKECPKCN
VTIEKDGGCNHMVCKNPSCRYDFCWVCLGSWEPHGSSWYSCNRFDEEEAK
QARLAQQKYRSSMARYLHYYNRYSNHMQSLKMENKLYSNIQAKMDDMQEE
MSWIEVQFLRDAVDVLCQCRTTLMYSYVFAFYLMNNNQKIIFEDNQKDME
MATEKLSECLEREITVKNIYEVKQKVLDLSHYCQKRRHVLLCHVREGYEN
DWWEFKEETTT*

BS14289.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG12362-PA 511 CG12362-PA 1..511 1..511 2833 100 Plus
CG12362-PB 511 CG12362-PB 1..511 1..511 2833 100 Plus
ari-1-PF 503 CG5659-PF 22..503 28..507 1673 61 Plus
ari-1-PE 503 CG5659-PE 22..503 28..507 1673 61 Plus
ari-1-PD 503 CG5659-PD 22..503 28..507 1673 61 Plus