Clone Sequence Records
BS14289.3prime Sequence
538 bp (453 high quality bases) assembled on 2006-10-13
> BS14289.3prime
ATGGTCTAGAAAGCTTTTATGTAGTGGTCTCTTCTTTAAATTCCCACCAG
TCATTTTCGTATCCCTCCCTCACATGGCAAAGGAGGACATGTCGTCGTTT
TTGGCAATAGTGCGATAAGTCCAGAACCTTTTGTTTAACTTCATAGATAT
TCTTGACAGTGATCTCTCGCTCCAAGCACTCGGACAGCTTTTCTGTGGCC
ATTTCCATGTCCTTCTGATTATCCTCGAATATGATCTTCTGATTGTTGTT
CATCAAATAAAATGCAAACACATAGCTGTACATCAGAGTGGTTCGACATT
GGCATAAGACATCGACGGCATCACGCAGAAACTGAACCTCAATCCAGCTC
ATCTCCTCCTGCATGTCATCCATTTTGGCCTGAATATTGGAATATAATTT
ATTTTCCATTTTCAAACTTTGCATGTGGTTGCTATAACGATTGTAATAGT
GCAGATATCGGGCCATTGAAGAGCGATATTTTTGCTGAGCCAATCTGGCC
TGTTTTCGCTTCTTCCTCGTCGAAGCGATTGCAACTGT
BS14289.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12362-PB | 1536 | CG12362-RB | 1016..1536 | 538..17 | 2545 | 99.6 | Minus |
CG12362-PA | 1536 | CG12362-RA | 1016..1536 | 538..17 | 2545 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12362-RA | 1897 | CG12362-RA | 1175..1696 | 538..16 | 2575 | 99.6 | Minus |
CG12362-RB | 1957 | CG12362-RB | 1235..1756 | 538..16 | 2575 | 99.6 | Minus |
ari-1-RF | 3350 | CG5659-RF | 1717..2048 | 533..204 | 215 | 72.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:25:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10414052..10414573 | 538..16 | 2550 | 99.6 | Minus |
X | 23542271 | X | 18133053..18133138 | 204..289 | 190 | 81.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:25:08 has no hits.
BS14289.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:55 Download gff for
BS14289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-PA | 1016..1536 | 17..538 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:39:18 Download gff for
BS14289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-RB | 1235..1756 | 16..538 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:00 Download gff for
BS14289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-RB | 1235..1756 | 16..538 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:00 Download gff for
BS14289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10414052..10414573 | 16..538 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:39:18 Download gff for
BS14289.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10407152..10407673 | 16..538 | 99 | | Minus |
BS14289.5prime Sequence
583 bp (506 high quality bases) assembled on 2006-10-13
> BS14289.5prime
GAAGTTATCAGTCGACATGAATTCCGAAATGGAATTCTCGGATGAGGACC
ACGGTGACTCGCATCGGTCGCTTCTCACTCACATGAGTTGCGAAAATGAC
AGCGACAGCGAGGACACCTGCACGGAAATCCTTTTGCCGGAAAATTCCAA
CAGTCCCGAAACGGAGGACTTTGTGTACAAGGTCCTTTCGGTGGACCAGA
TTGTTCAGCATCAGCGTAACATCATCGATGAGGTGAATAATGTCCTGAAT
TTGCCACCGCAAGTCACGCGTATTATCCTAAATCACTTCAAATGGGACAA
AGAGAGCTTGTTCGAAAATTATTTCGAGAGCAATCCGAAGGACTTCTTTC
AGCGTGCCCATGTGTTGAATCCCTTTGAGAAGAAGATTGAACGCGAGTCT
GCGGCGTCTACATCCTGTGCCATACCTCAGCTCTGTGGCATTTGCTTTTG
TTCTTGCGATGAGCTCATAGGTTTGGGCTGTGGTCACAACTTTTGTGCCG
CCTGCTGGAAACAATATTTGGCCAATAAGACGTGTAGCGAGGGCTTGGCC
AATACCATCAAATGTCCAGCGGCCCACTGCGAG
BS14289.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12362-PB | 1536 | CG12362-RB | 1..567 | 17..583 | 2810 | 99.8 | Plus |
CG12362-PA | 1536 | CG12362-RA | 1..567 | 17..583 | 2810 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:19:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12362-RA | 1897 | CG12362-RA | 160..726 | 17..583 | 2820 | 99.8 | Plus |
CG12362-RB | 1957 | CG12362-RB | 220..786 | 17..583 | 2820 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:19:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10413037..10413603 | 17..583 | 2820 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-13 01:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6386..6524 | 532..393 | 130 | 58.7 | Minus |
BS14289.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:55 Download gff for
BS14289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-PA | 1..567 | 17..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:10:51 Download gff for
BS14289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-RB | 215..786 | 11..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:56 Download gff for
BS14289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-RB | 215..786 | 11..583 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:56 Download gff for
BS14289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10413032..10413603 | 11..583 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:10:51 Download gff for
BS14289.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10406132..10406703 | 11..583 | 99 | | Plus |
BS14289.complete Sequence
1568 bp assembled on 2009-12-07
GenBank Submission: KX804013
> BS14289.complete
GAAGTTATCAGTCGACATGAATTCCGAAATGGAATTCTCGGATGAGGACC
ACGGTGACTCGCATCGGTCGCTTCTCACTCACATGAGTTGCGAAAATGAC
AGCGACAGCGAGGACACCTGCACGGAAATCCTTTTGCCGGAAAATTCCAA
CAGTCCCGAAACGGAGGACTTTGTGTACAAGGTCCTTTCGGTGGACCAGA
TTGTTCAGCATCAGCGTAACATCATCGATGAGGTGAATAATGTCCTGAAT
TTGCCACCGCAAGTCACGCGTATTATCCTAAATCACTTCAAATGGGACAA
AGAGAGCTTGTTCGAAAATTATTTCGAGAGCAATCCGAAGGACTTCTTTC
AGCGTGCCCATGTGTTGAATCCCTTTGAGAAGAAGATTGAACGCGAGTCT
GCGGCGTCTACATCCTGTGCCATACCTCAGCTCTGTGGCATTTGCTTTTG
TTCTTGCGATGAGCTCATAGGTTTGGGCTGTGGTCACAACTTTTGTGCCG
CCTGCTGGAAACAATATTTGGCCAATAAGACGTGTAGCGAGGGCTTGGCC
AATACCATCAAATGTCCAGCGGCCAACTGCGAGATCCTGGTGGATTATAT
ATCCTTTCTGAAACTTGCCGATGATTCAGAGGTTGTCGAGCGATATCAGC
AGCTCATCACCAACACGTTTGTGGAATGCAACATGCTGATGCGATGGTGC
CCCGCCCCCAATTGCAGCCATGCCGTCAAGGCCGTTTGTGCTGAACCACG
AGCAGTCCTTTGCAAATGTGGGCATGAGTTTTGCTTTGCTTGTGGCGAAA
ATTGGCATGAACCCGCCAGCTGCAGTTCGCTCAAGAAGTGGGTGAAAAAA
TGTCTTGAGGACTCGGAGACATCGAATTGGATTGCCCAGAACACGAAGGA
GTGTCCCAAGTGCAATGTTACCATCGAGAAGGATGGTGGTTGCAATCATA
TGGTATGCAAGAATCCATCCTGCCGTTATGATTTCTGCTGGGTATGCCTT
GGATCCTGGGAGCCACATGGTTCGTCCTGGTACAGTTGCAATCGCTTCGA
CGAGGAGGAAGCGAAACAGGCCAGATTGGCTCAGCAAAAATATCGCTCTT
CAATGGCCCGATATCTGCACTATTACAATCGTTATAGCAACCACATGCAA
AGTTTGAAAATGGAAAATAAATTATATTCCAATATTCAGGCCAAAATGGA
TGACATGCAGGAGGAGATGAGCTGGATTGAGGTTCAGTTTCTGCGTGATG
CCGTCGATGTCTTATGCCAATGTCGAACCACTCTGATGTACAGCTATGTG
TTTGCATTTTATTTGATGAACAACAATCAGAAGATCATATTCGAGGATAA
TCAGAAGGACATGGAAATGGCCACAGAAAAGCTGTCCGAGTGCTTGGAGC
GAGAGATCACTGTCAAGAATATCTATGAAGTTAAACAAAAGGTTCTGGAC
TTATCGCACTATTGCCAAAAACGACGACATGTCCTCCTTTGCCATGTGAG
GGAGGGATACGAAAATGACTGGTGGGAATTTAAAGAAGAGACCACTACAT
AAAAGCTTTCTAGACCAT
BS14289.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:11:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12362-RA | 1536 | CG12362-PA | 1..1536 | 17..1552 | 7680 | 100 | Plus |
CG12362-RB | 1536 | CG12362-PB | 1..1536 | 17..1552 | 7680 | 100 | Plus |
ari-1-RF | 1512 | CG5659-PF | 616..1337 | 647..1365 | 590 | 72.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:11:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12362-RA | 1897 | CG12362-RA | 160..1696 | 17..1553 | 7685 | 100 | Plus |
CG12362-RB | 1957 | CG12362-RB | 220..1756 | 17..1553 | 7685 | 100 | Plus |
ari-1-RF | 3350 | CG5659-RF | 1327..2048 | 647..1365 | 590 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10413037..10414573 | 17..1553 | 7685 | 100 | Plus |
X | 23542271 | X | 18133765..18134174 | 1056..647 | 490 | 74.6 | Minus |
X | 23542271 | X | 18133053..18133138 | 1365..1280 | 190 | 81.4 | Minus |
Blast to na_te.dros performed 2014-11-28 02:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6386..6524 | 532..393 | 130 | 58.7 | Minus |
BS14289.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:36 Download gff for
BS14289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-RA | 158..1691 | 17..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:11 Download gff for
BS14289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-RB | 220..1753 | 17..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:31 Download gff for
BS14289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-RA | 158..1691 | 17..1550 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:49 Download gff for
BS14289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12362-RB | 220..1753 | 17..1550 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:49 Download gff for
BS14289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10413037..10414570 | 17..1550 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:11 Download gff for
BS14289.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10406137..10407670 | 17..1550 | 100 | | Plus |
BS14289.pep Sequence
Translation from 16 to 1551
> BS14289.pep
MNSEMEFSDEDHGDSHRSLLTHMSCENDSDSEDTCTEILLPENSNSPETE
DFVYKVLSVDQIVQHQRNIIDEVNNVLNLPPQVTRIILNHFKWDKESLFE
NYFESNPKDFFQRAHVLNPFEKKIERESAASTSCAIPQLCGICFCSCDEL
IGLGCGHNFCAACWKQYLANKTCSEGLANTIKCPAANCEILVDYISFLKL
ADDSEVVERYQQLITNTFVECNMLMRWCPAPNCSHAVKAVCAEPRAVLCK
CGHEFCFACGENWHEPASCSSLKKWVKKCLEDSETSNWIAQNTKECPKCN
VTIEKDGGCNHMVCKNPSCRYDFCWVCLGSWEPHGSSWYSCNRFDEEEAK
QARLAQQKYRSSMARYLHYYNRYSNHMQSLKMENKLYSNIQAKMDDMQEE
MSWIEVQFLRDAVDVLCQCRTTLMYSYVFAFYLMNNNQKIIFEDNQKDME
MATEKLSECLEREITVKNIYEVKQKVLDLSHYCQKRRHVLLCHVREGYEN
DWWEFKEETTT*
BS14289.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12362-PA | 511 | CG12362-PA | 1..511 | 1..511 | 2833 | 100 | Plus |
CG12362-PB | 511 | CG12362-PB | 1..511 | 1..511 | 2833 | 100 | Plus |
ari-1-PF | 503 | CG5659-PF | 22..503 | 28..507 | 1673 | 61 | Plus |
ari-1-PE | 503 | CG5659-PE | 22..503 | 28..507 | 1673 | 61 | Plus |
ari-1-PD | 503 | CG5659-PD | 22..503 | 28..507 | 1673 | 61 | Plus |