Clone Sequence Records
BS14290.complete Sequence
905 bp assembled on 2010-02-09
GenBank Submission: KX802721
> BS14290.complete
GAAGTTATCAGTCGACATGCCCACCATCGAGCACAAGCTAAACATCACCG
AGGAGGAGGTTCCGGAGCACATCCGCCGACTTGCCCAGGAGCAGGGAGAG
TGTCCCAGTTCCAAGGATAAGGTCATCGAACAATTCCGTAACTACATACT
AGAACATAATGAATGCCAACCACACAGAAGTGATGCGAAGTACCTGGAGA
AATTCCTAAGAGCCCGCTACTGGAAAATCGAGAACAGTTACAAATTGCTC
TGCAGTTACTACAGGTTTCGGGAGCAGAACAAAAGCTTTTATGAGAAGGT
TCGTCCTCTGGACCTGAGACATGTTGGGCAATCGGACATCCTGACAGTGA
CTCCCTATCGGGATCAACATGGCCATAGGATACTCATCTACCGATTCGGA
CTGTGGCGACCCAATCAAGTAACCGTCGACGATATATTTCGCGCCACCAT
TGTCCTGCAGGAACTGGGCAGCCTGGAACCCATCTCACAGATTGTCGGAG
GAGTGGGAATATTCGATCTGAAGGACCTGGGCTTGGAACACATACTCCAC
CTGAGTCCCAGCGTGGCTCAGAAGATGATTGCTCTACTAGTGACCTCCAT
GCCCATTAGAACATCCGCCCTTCATATTGTAAATCAGAATTGGGTCTTCA
ACGCGGCATTCAAGATATTTAAACCTTTCCTCAACGCCGCTATGCGAGAA
AAGCTATACATCCATGGCAGTGACATGACTTCCCTGCACAAACACATCAA
CCCAGAACATCTTCCCAAGCGCTATGGTGGCTTGCACGAGGACTACTCTT
ATACGCTCTGGTTGGATATGCTGAAGGAGCAGTGTTCGGGCAATAGTATC
CAAAAGGATATGGAGCAATTGGGATTCATCTTTGACTAGAAGCTTTCTAG
ACCAT
BS14290.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-RB | 900 | CG10026-PB | 27..900 | 16..889 | 4370 | 100 | Plus |
CG10026-RD | 873 | CG10026-PD | 1..873 | 17..889 | 4365 | 100 | Plus |
CG10026-RC | 873 | CG10026-PC | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-RD | 1143 | CG10026-RD | 140..1013 | 16..889 | 4370 | 100 | Plus |
CG10026-RC | 1207 | CG10026-RC | 204..1077 | 16..889 | 4370 | 100 | Plus |
CG10026-RB | 1533 | CG10026-RB | 530..1403 | 16..889 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19456823..19457168 | 247..592 | 1730 | 100 | Plus |
2L | 23513712 | 2L | 19457227..19457406 | 592..771 | 900 | 100 | Plus |
2L | 23513712 | 2L | 19456432..19456568 | 16..152 | 685 | 100 | Plus |
2L | 23513712 | 2L | 19457475..19457593 | 771..889 | 595 | 100 | Plus |
2L | 23513712 | 2L | 19456628..19456724 | 151..247 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:23:34 has no hits.
BS14290.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:15 Download gff for
BS14290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 27..900 | 16..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:09:49 Download gff for
BS14290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RC | 205..1077 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:23 Download gff for
BS14290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 531..1403 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:29:35 Download gff for
BS14290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RC | 205..1077 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:32 Download gff for
BS14290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 531..1403 | 17..889 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:32 Download gff for
BS14290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19456433..19456568 | 17..152 | 100 | -> | Plus |
2L | 19456630..19456724 | 153..247 | 100 | -> | Plus |
2L | 19456824..19457168 | 248..592 | 100 | -> | Plus |
2L | 19457228..19457406 | 593..771 | 100 | -> | Plus |
2L | 19457476..19457593 | 772..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:23 Download gff for
BS14290.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19456433..19456568 | 17..152 | 100 | -> | Plus |
arm_2L | 19456630..19456724 | 153..247 | 100 | -> | Plus |
arm_2L | 19456824..19457168 | 248..592 | 100 | -> | Plus |
arm_2L | 19457228..19457406 | 593..771 | 100 | -> | Plus |
arm_2L | 19457476..19457593 | 772..889 | 100 | | Plus |
BS14290.3prime Sequence
569 bp (511 high quality bases) assembled on 2006-10-13
> BS14290.3prime
ATGGTCTAGAAAGCTTCTAGTCAAAGATGAATCCCAATTGCTCCATATCC
TTTTGGATACTATTGCCCGAACACTGCTCCTTCAGCATATCCAACCAGAG
CGTATAAGAGTAGTCCTCGTGCAAGCCACCATAGCGCTTGGGAAGATGTT
CTGGGTTGATGTGTTTGTGCAGGGAAGTCATGTCACTGCCATGGATGTAT
AGCTTTTCTCGCATAGCGGCGTTGAGGAAAGGTTTAAATATCTTGAATGC
CGCGTTGAAGACCCAATTCTGATTTACAATATGAAGGGCGGATGTTCTAA
TGGGCATGGAGGTCACTAGTAGAGCAATCATCTTCTGAGCCACGCTGGGA
CTCAGGTGGAGTATGTGTTCCAAGCCCAGGTCCTTCAGATCGAATATTCC
CACTCCTCCGACAATCTGTGAGATGGGTTCCAGGCTGCCCAGTTCCTGCA
GGACAATGGTGGCGCGAAATATATCGTCGACGGTTACTTGATTGGGTCGC
CACAGTCCGAATCGGTAGATGAATATCCTATGGCCATGTTGATCCCGATA
GGGAGTCACTGTCAGGATG
BS14290.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-PA | 873 | CG10026-RA | 321..873 | 569..17 | 2740 | 99.8 | Minus |
CG10026-PB | 900 | CG10026-RB | 348..900 | 569..17 | 2740 | 99.8 | Minus |
CG10026-PC | 873 | CG10026-RC | 321..873 | 569..17 | 2740 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-RD | 1143 | CG10026-RD | 461..1013 | 569..17 | 2750 | 99.8 | Minus |
CG10026-RC | 1207 | CG10026-RC | 525..1077 | 569..17 | 2750 | 99.8 | Minus |
CG10026-RB | 1533 | CG10026-RB | 851..1403 | 569..17 | 2750 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19456913..19457168 | 569..314 | 1265 | 99.6 | Minus |
2L | 23513712 | 2L | 19457227..19457406 | 314..135 | 900 | 100 | Minus |
2L | 23513712 | 2L | 19457475..19457593 | 135..17 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:23:29 has no hits.
BS14290.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:56 Download gff for
BS14290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-PC | 321..873 | 17..569 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:40:01 Download gff for
BS14290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 851..1407 | 11..569 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:00:27 Download gff for
BS14290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 851..1407 | 11..569 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:00:27 Download gff for
BS14290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19456913..19457168 | 314..569 | 99 | -> | Minus |
2L | 19457228..19457406 | 135..313 | 100 | -> | Minus |
2L | 19457476..19457597 | 11..134 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:40:01 Download gff for
BS14290.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19456913..19457168 | 314..569 | 99 | -> | Minus |
arm_2L | 19457228..19457406 | 135..313 | 100 | -> | Minus |
arm_2L | 19457476..19457597 | 11..134 | 98 | | Minus |
BS14290.5prime Sequence
594 bp (525 high quality bases) assembled on 2006-10-13
> BS14290.5prime
GAAGTTATCAGTCGACATGCCCACCATCGAGCACAAGCTAAACATCACCG
AGGAGGAGGTTCCGGAGCACATCCGCCGACTTGCCCAGGAGCAGGGAGAG
TGTCCCAGTTCCAAGGATAAGGTCATCGAACAATTCCGTAACTACATACT
AGAACATAATGAATGCCAACCACACAGAAGTGATGCGAAGTACCTGGAGA
AATTCCTAAGAGCCCGCTACTGGAAAATCGAGAACAGTTACAAATTGCTC
TGCAGTTACTACAGGTTTCGGGAGCAGAACAAAAGCTTTTATGAGAAGGT
TCGTCCTCTGGACCTGAGACATGTTGGGCAATCGGACATCCTGACAGTGA
CTCCCTATCGGGATCAACATGGCCATAGGATACTCATCTACCGATTCGGA
CTGTGGCGACCCAATCAAGTAACCGTCGACGATATATTTCGCGCCACCAT
TGTCCTGCAGGAACTGGGCAGCCTGGAACCCATCTCACAGATTGTCGGAG
GAGTGGGAATATTCGATCTGAAGGACCTGGGCTTGGAACACATACTCCAC
CTGAGTCCCAGCGTGGCTCAGAAGATGATTGCTCTACTAATGAC
BS14290.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-PB | 900 | CG10026-RB | 27..600 | 16..589 | 2870 | 100 | Plus |
CG10026-PA | 873 | CG10026-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
CG10026-PC | 873 | CG10026-RC | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-RD | 1143 | CG10026-RD | 140..718 | 16..594 | 2880 | 99.8 | Plus |
CG10026-RC | 1207 | CG10026-RC | 204..782 | 16..594 | 2880 | 99.8 | Plus |
CG10026-RB | 1533 | CG10026-RB | 530..1108 | 16..594 | 2880 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19456823..19457165 | 247..589 | 1715 | 100 | Plus |
2L | 23513712 | 2L | 19456432..19456568 | 16..152 | 685 | 100 | Plus |
2L | 23513712 | 2L | 19456628..19456724 | 151..247 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-05 02:19:51 has no hits.
BS14290.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:56 Download gff for
BS14290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-PB | 27..605 | 16..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:13 Download gff for
BS14290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 530..1108 | 16..594 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:25 Download gff for
BS14290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10026-RB | 530..1108 | 16..594 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:25 Download gff for
BS14290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19456432..19456568 | 16..152 | 100 | -> | Plus |
2L | 19456630..19456724 | 153..247 | 100 | -> | Plus |
2L | 19456824..19457168 | 248..594 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:13 Download gff for
BS14290.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19456432..19456568 | 16..152 | 100 | -> | Plus |
arm_2L | 19456630..19456724 | 153..247 | 100 | -> | Plus |
arm_2L | 19456824..19457168 | 248..594 | 99 | | Plus |
BS14290.pep Sequence
Translation from 16 to 888
> BS14290.pep
MPTIEHKLNITEEEVPEHIRRLAQEQGECPSSKDKVIEQFRNYILEHNEC
QPHRSDAKYLEKFLRARYWKIENSYKLLCSYYRFREQNKSFYEKVRPLDL
RHVGQSDILTVTPYRDQHGHRILIYRFGLWRPNQVTVDDIFRATIVLQEL
GSLEPISQIVGGVGIFDLKDLGLEHILHLSPSVAQKMIALLVTSMPIRTS
ALHIVNQNWVFNAAFKIFKPFLNAAMREKLYIHGSDMTSLHKHINPEHLP
KRYGGLHEDYSYTLWLDMLKEQCSGNSIQKDMEQLGFIFD*
BS14290.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10026-PD | 290 | CG10026-PD | 1..290 | 1..290 | 1542 | 100 | Plus |
CG10026-PC | 290 | CG10026-PC | 1..290 | 1..290 | 1542 | 100 | Plus |
CG10026-PA | 290 | CG10026-PA | 1..290 | 1..290 | 1542 | 100 | Plus |
CG10026-PB | 299 | CG10026-PB | 10..299 | 1..290 | 1542 | 100 | Plus |
CG5973-PF | 311 | CG5973-PF | 23..272 | 7..255 | 406 | 35.3 | Plus |