Clone Sequence Records
BS14294.complete Sequence
1568 bp assembled on 2009-12-07
GenBank Submission: KX802592
> BS14294.complete
GAAGTTATCAGTCGACATGGGGAACCAATTGGCTATACAGATGAATAGCG
ATGAAGACGACGATTTTGATTCTTCGGACAACGAGCTGGGCTTCAACGTG
ATCAACTTTACGGTGAACGCCATGGATCTGCGCTCCGATTATTGCAGCAG
CGAGATGCCAGTTATACGAGGCAAGCCCGATCTAGTTAAATTTCAGAAAA
CTGATATGTACAAGGAGATCCAGGCGTCGAGTGGATTAGTGAGCAATCCG
AACAATCGCTGGAACCTGGTGCACGCCCTTCAGCAGCGTGAGAATGGGTT
GGCATCGCCGCACAGCGCATCGTTCTCCAAGAACCAGCAGCGCTACATAT
CCAATCTTTACATACCAAACAAAAAGGCCACACGCCTGATGTCGCTGGAA
TCCAAAATATTTGTGACCAAGTTCAATCGTTCGGGCAGCAAGTTGCTGAC
CGCTTGTCAAGATGGCTTTGTGCGCATTTACGATGGCGCCAAGGGCACTT
ATCACCTGCTGAATCGCATCCGAGCCCGCGATGTTGAGTGGAGCATCATC
GATGCGGATTTTAGTCCGAATGGCGAGCACTTCGCCTACAGCACCTGGTC
CCGCTCATTGTTCATCATGCCCGTGAATGGGGGGGAAGACGACTGCCAGT
GGATCGATGTCAATGGACTGCCAAGCCATAGGTTGGCCATCTTCTCGCTG
CGCTATTCGCCAACAGGCGACAAAATCATCGGGGGCAGCAACAATTCCAC
GGTCATCGTGACCGACATTCGCACAAGAAACACACAGATCCTGCGCACCC
ACCGCATGCCCGGCAAGGATGTTAACTCGGTGTGCTTCCTACACGATAAG
GATCCAAATGTGATAATCGCCGGCTGTGACGACGGCCTGCTAAAGGTCTA
CGACCTGCGCACCACCTTCCGTTCACGGGACCTGTCCAAGTCTGTGGCAT
CCTTCATCGGCCACTACGATGGCATCACCTACATCGATTCGCGCAACGAC
GGCTACCACGTGCTGTCCAACTCCAAAGACCAAAGCATCAAAATCTGGGA
CATAAGGCAGCCGAGCAATATGCGTAATCGCAGTCGTTCTAGACAGCAAG
TCGACCCCACCACATGGGACTACCGATGGAACCGCGTTCCGCGGGAATTT
TACAATCCGCATAAGCCACTGGAAGGAGACTCCAGCATAATGACCTACCG
CGGTCACCGAGTTACCAAAACCCTGTTGCGGGCGAAGTTCTCACCCATGG
AGCAGACAGGGCAACGCTACATTTACACAGGCTGTGCCACCGGACGTATT
ATAATTTATGATGTACTTACTGGTAAGATTCAAGAGGCTATTGAAGGACA
TAGGACTGTGATAAGAGATCTGGACTGGCATCCGGATCGCTCAGAAATCG
TGTCTGGCTCGTGGGACACCCATGTTCACCTGAACAACTTCAGCCGCAGC
AACGCCAATCGTCCGGTAAAGCGATCACATAGCTCGGATCATGACAAAAA
GCCCCTGAGAAGATCACGCCGTTTGGCGAATCGCAATGTAACACCGGACT
AGAAGCTTTCTAGACCAT
BS14294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:37:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-RA | 1536 | CG9945-PA | 1..1536 | 17..1552 | 7635 | 99.8 | Plus |
CG9945-RB | 1536 | CG9945-PB | 1..1536 | 17..1552 | 7635 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-RA | 1925 | CG9945-RA | 207..1742 | 17..1552 | 7635 | 99.8 | Plus |
CG9945-RB | 1949 | CG9945-RB | 81..1616 | 17..1552 | 7635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20619476..20620019 | 605..1148 | 2705 | 99.8 | Plus |
2R | 25286936 | 2R | 20618953..20619220 | 194..461 | 1340 | 100 | Plus |
2R | 25286936 | 2R | 20618709..20618888 | 17..196 | 900 | 100 | Plus |
2R | 25286936 | 2R | 20620080..20620235 | 1149..1304 | 780 | 100 | Plus |
2R | 25286936 | 2R | 20619279..20619427 | 460..608 | 745 | 100 | Plus |
2R | 25286936 | 2R | 20620607..20620748 | 1411..1552 | 665 | 97.9 | Plus |
2R | 25286936 | 2R | 20620438..20620544 | 1305..1411 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:37:54 has no hits.
BS14294.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:16 Download gff for
BS14294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RA | 1..1536 | 17..1552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:00 Download gff for
BS14294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RA | 207..1742 | 17..1552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:13 Download gff for
BS14294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 81..1616 | 17..1552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:47 Download gff for
BS14294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RA | 207..1742 | 17..1552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:10 Download gff for
BS14294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 81..1616 | 17..1552 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:10 Download gff for
BS14294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20618956..20619220 | 197..461 | 100 | -> | Plus |
2R | 20619281..20619427 | 462..608 | 100 | -> | Plus |
2R | 20619480..20620019 | 609..1148 | 100 | -> | Plus |
2R | 20620080..20620235 | 1149..1304 | 100 | -> | Plus |
2R | 20620438..20620544 | 1305..1411 | 100 | -> | Plus |
2R | 20620608..20620748 | 1412..1552 | 97 | | Plus |
2R | 20618709..20618888 | 17..196 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:13 Download gff for
BS14294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16507585..16507740 | 1149..1304 | 100 | -> | Plus |
arm_2R | 16507943..16508049 | 1305..1411 | 100 | -> | Plus |
arm_2R | 16508113..16508253 | 1412..1552 | 97 | | Plus |
arm_2R | 16506214..16506393 | 17..196 | 100 | -> | Plus |
arm_2R | 16506461..16506725 | 197..461 | 100 | -> | Plus |
arm_2R | 16506786..16506932 | 462..608 | 100 | -> | Plus |
arm_2R | 16506985..16507524 | 609..1148 | 100 | -> | Plus |
BS14294.3prime Sequence
678 bp (539 high quality bases) assembled on 2006-10-13
> BS14294.3prime
ATGGTCTAGAAAGCTTCTAGTCCGGTGTTACATTGCGATTCGCCAAACGG
CGTGATCTTCTCAGGGGCTTTTTGTCATGATCCGAGCTATGTGATCGCTT
TACCGGACGATTGGCGTTGCTGCGGCTGAAGTTGTTCAGGTGAACATGGG
TGTCCCACGAGCCAGACACGATTTCTGAGCGATCCGGATGCCAGTCCAGA
TCTCTTATCACAGTCCTATGTCCTTCAATAGCCTCTTGAATCTTACCAGT
AAGTACATCATAAATTATAATACGTCCGGTGGCACAGCCTGTGTAAATGT
AGCGTTGCCCTGTCTGCTCCATGGGTGAGAACTTCGCCCGCAACAGGGTT
TTGGTAACTCGGTGACCGCGGTAGGTCATTATGCTGGAGTCTCCTTCCAG
TGGCTTATGCGGATTGTAAAATTCCCGCGGAACGCGGTTCCATCGGTAGT
CCCATGTGGTGGGGTCGACTTGCTGTCTAGAACGACTGCGATTACGCATA
TTGCTCGGCTGCCTTATGTCCCAGATTTTGATGCTTTGGTCTTTGGAGTT
GGACAGCACGTGGTAGCCGTCGTTGCGCGAATCGATGTAGGTGATGCCAT
CGTAGTGGCCGATGAAGGATGCCACCGACTTGGACAGGTCCCGTGAACGG
AAGGTGGTGCGCAAGTCGTAAACCTTTA
BS14294.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-PB | 1536 | CG9945-RB | 875..1536 | 678..17 | 3160 | 99 | Minus |
CG9945-PA | 1536 | CG9945-RA | 875..1536 | 678..17 | 3160 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:31:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-RA | 1925 | CG9945-RA | 1081..1742 | 678..17 | 3220 | 99.1 | Minus |
CG9945-RB | 1949 | CG9945-RB | 955..1616 | 678..17 | 3220 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:31:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20619762..20620019 | 678..421 | 1245 | 98.8 | Minus |
2R | 25286936 | 2R | 20620080..20620235 | 420..265 | 780 | 100 | Minus |
2R | 25286936 | 2R | 20620607..20620748 | 158..17 | 665 | 97.9 | Minus |
2R | 25286936 | 2R | 20620438..20620544 | 264..158 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:31:51 has no hits.
BS14294.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:58 Download gff for
BS14294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-PA | 876..1536 | 17..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:45:22 Download gff for
BS14294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 956..1616 | 17..677 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:16 Download gff for
BS14294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 956..1616 | 17..677 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:16 Download gff for
BS14294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20620608..20620748 | 17..157 | 97 | | Minus |
2R | 20619763..20620019 | 421..677 | 98 | -> | Minus |
2R | 20620080..20620235 | 265..420 | 100 | -> | Minus |
2R | 20620438..20620544 | 158..264 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:45:22 Download gff for
BS14294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16507268..16507524 | 421..677 | 98 | -> | Minus |
arm_2R | 16507585..16507740 | 265..420 | 100 | -> | Minus |
arm_2R | 16507943..16508049 | 158..264 | 100 | -> | Minus |
arm_2R | 16508113..16508253 | 17..157 | 97 | | Minus |
BS14294.5prime Sequence
626 bp (583 high quality bases) assembled on 2006-10-13
> BS14294.5prime
GAAGTTATCAGTCGACATGGGGAACCAATTGGCTATACAGATGAATAGCG
ATGAAGACGACGATTTTGATTCTTCGGACAACGAGCTGGGCTTCAACGTG
ATCAACTTTACGGTGAACGCCATGGATCTGCGCTCCGATTATTGCAGCAG
CGAGATGCCAGTTATACGAGGCAAGCCCGATCTAGTTAAATTTCAGAAAA
CTGATATGTACAAGGAGATCCAGGCGTCGAGTGGATTAGTGAGCAATCCG
AACAATCGCTGGAACCTGGTGCACGCCCTTCAGCAGCGTGAGAATGGGTT
GGCATCGCCGCACAGCGCATCGTTCTCCAAGAACCAGCAGCGCTACATAT
CCAATCTTTACATACCAAACAAAAAGGCCACACGCCTGATGTCGCTGGAA
TCCAAAATATTTGTGACCAAGTTCAATCGTTCGGGCAGCAAGTTGCTGAC
CGCTTGTCAAGATGGCTTTGTGCGCATTTACGATGGCGCCAAGGGCACTT
ATCACCTGCTGAATCGCATCCGAGCCCGCGATGTTGAGTGGAGCATCATC
GATGCGGATTTTAGTCCGAATGGCGAGCACTTCGCCTACAGCACCTGGTC
CCGCTCATTGTTCATCATGCCCGTGA
BS14294.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-PB | 1536 | CG9945-RB | 1..610 | 17..626 | 3050 | 100 | Plus |
CG9945-PA | 1536 | CG9945-RA | 1..610 | 17..626 | 3050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-RA | 1925 | CG9945-RA | 207..816 | 17..626 | 3050 | 100 | Plus |
CG9945-RB | 1949 | CG9945-RB | 81..690 | 17..626 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20618953..20619220 | 194..461 | 1340 | 100 | Plus |
2R | 25286936 | 2R | 20618709..20618888 | 17..196 | 900 | 100 | Plus |
2R | 25286936 | 2R | 20619279..20619427 | 460..608 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:08:59 has no hits.
BS14294.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:49:58 Download gff for
BS14294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-PA | 1..609 | 17..625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:41:50 Download gff for
BS14294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 77..689 | 10..625 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:08:22 Download gff for
BS14294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9945-RB | 77..689 | 10..625 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:08:22 Download gff for
BS14294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20618956..20619220 | 197..461 | 100 | -> | Plus |
2R | 20619281..20619427 | 462..608 | 100 | -> | Plus |
2R | 20619480..20619496 | 609..625 | 100 | | Plus |
2R | 20618705..20618888 | 10..196 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:41:50 Download gff for
BS14294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16506786..16506932 | 462..608 | 100 | -> | Plus |
arm_2R | 16506985..16507001 | 609..625 | 100 | | Plus |
arm_2R | 16506210..16506393 | 10..196 | 97 | -> | Plus |
arm_2R | 16506461..16506725 | 197..461 | 100 | -> | Plus |
BS14294.pep Sequence
Translation from 16 to 1551
> BS14294.pep
MGNQLAIQMNSDEDDDFDSSDNELGFNVINFTVNAMDLRSDYCSSEMPVI
RGKPDLVKFQKTDMYKEIQASSGLVSNPNNRWNLVHALQQRENGLASPHS
ASFSKNQQRYISNLYIPNKKATRLMSLESKIFVTKFNRSGSKLLTACQDG
FVRIYDGAKGTYHLLNRIRARDVEWSIIDADFSPNGEHFAYSTWSRSLFI
MPVNGGEDDCQWIDVNGLPSHRLAIFSLRYSPTGDKIIGGSNNSTVIVTD
IRTRNTQILRTHRMPGKDVNSVCFLHDKDPNVIIAGCDDGLLKVYDLRTT
FRSRDLSKSVASFIGHYDGITYIDSRNDGYHVLSNSKDQSIKIWDIRQPS
NMRNRSRSRQQVDPTTWDYRWNRVPREFYNPHKPLEGDSSIMTYRGHRVT
KTLLRAKFSPMEQTGQRYIYTGCATGRIIIYDVLTGKIQEAIEGHRTVIR
DLDWHPDRSEIVSGSWDTHVHLNNFSRSNANRPVKRSHSSDHDKKPLRRS
RRLANRNVTPD*
BS14294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9945-PA | 511 | CG9945-PA | 1..511 | 1..511 | 2719 | 100 | Plus |
CG9945-PB | 511 | CG9945-PB | 1..511 | 1..511 | 2719 | 100 | Plus |
CG3436-PC | 347 | CG3436-PC | 9..342 | 129..472 | 225 | 26 | Plus |
CG3436-PA | 347 | CG3436-PA | 9..342 | 129..472 | 225 | 26 | Plus |
wds-PB | 361 | CG17437-PB | 80..347 | 182..465 | 174 | 22.9 | Plus |