Clone Sequence Records
BS14304.3prime Sequence
585 bp (520 high quality bases) assembled on 2006-10-13
> BS14304.3prime
ATGGTCTAGAAAGCTTCTACAGATTTCCCTGTGCCTGCTGCAAACGCATC
AGTCGCCGCTGCCTCAGCCAGGGCAGCAGGAGTCCACCTGGACGCTGGCC
GGGAAGTGGAGCTCGTGGGGCAAGGTCCATTGGGGCAGCCAGGGTGACGG
CTTCGGGGATGATCTCATTGCGCCGGAAACCACGGAAGGTGGCGCTAGGC
CTGCGTGGCACACGATCCTCAGGCTGGCGATCCTTTTTCTGCGGCACATC
CTCGTTTCTAATATTCAGGCTAAAGACATCCCCAGTGCGTGGATCGGAGG
ACAGATGACTGACCGTATCTTGAAGCACCTTGGGTATCCGCTCCACCACC
TGCAAGGCATCGCGGAGTGGCCGAATCTCTCGCTCCGGTTGCTTGCGCGA
CTGCTCCTTGGACGCCTTGCTCTTGGCGCTCTTTCGGAACAAAGGACTCT
TCTTGTTCTTCCGCGAGAGTGCATCCTTCTTAAGTGGAGCGGGGCGAGTC
AGTCGCGAAGCTGACTGCTCCAGGAACCATGGTTCCCGACGAGCCGGCTC
CTCCAGCTCACCCTGAAGCTTGAATGCCGATGGCT
BS14304.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14834-PA | 1224 | CG14834-RA | 656..1224 | 585..17 | 2795 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14834-RA | 1426 | CG14834-RA | 734..1303 | 585..16 | 2820 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7345821..7346390 | 16..585 | 2820 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:46:27 has no hits.
BS14304.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:01 Download gff for
BS14304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14834-PA | 656..1224 | 17..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:21:54 Download gff for
BS14304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14834-RA | 734..1303 | 16..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:22:27 Download gff for
BS14304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14834-RA | 734..1303 | 16..585 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:22:27 Download gff for
BS14304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7345821..7346390 | 16..585 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:21:54 Download gff for
BS14304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7338921..7339490 | 16..585 | 99 | | Plus |
BS14304.5prime Sequence
592 bp (516 high quality bases) assembled on 2006-10-13
> BS14304.5prime
GAAGTTATCAGTCGACATGATGACGGAAAAGATACGGAAGAGCAGCCTCA
GTGGCTATACGGTGATACTTCTACTGGCTGCTATTCAGTTCCAAGCAAGT
GTAGTGTCCAGCACGACAACCAAACCGCCATCGACATTGGCCACATCCAC
GAAAGCTAGTCGCAATGTGAATCCCCTGACGGAGTCGAAGCTCGAGAAGA
ATTGCAAGGCGCTGTGTGAGCATTGCGGCTGTTTGGGCTTCTACTGCGGC
GAGGAGTGCCTGTGCGAGTGTAATGACGACCAATCCGATACTGAGTGCAT
TCGCACCATGCAGATGAATGCCAAGACGTTGAATCTACCATTCGAAATCG
TCATCCAGGGACCGAGCAGCAATCGGTTTGTGCGCAACGCCCAGCAGTTC
GAGCAGAAACGAGATCTGGTGGCCAGGAGCGCCAGCACTTCAATGCAGTC
GCCTCGAAATCGTCGCTCAAACATAACCATCTACAAGCCCTCCACAAAGT
TGGTCATTCAACGTACGGCCAATGGCTTAAAAACGCCATCCAAGGCTTCG
GAGCAGATAAGGCACAAGAGGTCCGTCGATCACCTGAAGTGG
BS14304.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14834-PA | 1224 | CG14834-RA | 1..576 | 17..592 | 2755 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14834-RA | 1426 | CG14834-RA | 79..654 | 17..592 | 2805 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7346470..7347045 | 592..17 | 2805 | 99.1 | Minus |
Blast to na_te.dros performed 2015-02-10 23:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS3 | 1790 | BS3 BS3 1790bp | 539..567 | 127..99 | 109 | 86.2 | Minus |
BS14304.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:01 Download gff for
BS14304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14834-PA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:31 Download gff for
BS14304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14834-RA | 71..654 | 9..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:25:12 Download gff for
BS14304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14834-RA | 71..654 | 9..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:25:12 Download gff for
BS14304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7346470..7347049 | 9..592 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:31 Download gff for
BS14304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7339570..7340149 | 9..592 | 98 | | Minus |
BS14304.complete Sequence
1256 bp assembled on 2009-08-26
GenBank Submission: KX802404
> BS14304.complete
GAAGTTATCAGTCGACATGATGACGGAAAAGATACGGAAGAGCAGCCTCA
GTGGCTATACGGTGATACTTCTACTGGCTGCTATTCAGTTCCAAGCAAGT
GTAGTGTCCAGCACGACAACCAAACCGCCATCGACATTGGCCACATCCAC
GAAAGCTAGTCGCAATGTGAATCCCCTGACGGAGTCGAAGCTCGAGAAGA
ATTGCAAGGCGCTGTGTGAGCATTGCGGCTGTTTGGGCTTCTACTGCGGC
GAGGAGTGCCTGTGCGAGTGTAATGACGACCAATCCGATACTGAGTGCAT
TCGCACCATGCAGATGAATGCCAAGACGTTGAATCTACCATTCGAAATCG
TCATCCAGGGACCGAGCAGCAATCGGTTTGTGCGCAACGCCCAGCAGTTC
GAGCAGAAACGAGATCTGGTGGCCAGGAGCGCCAGCACTTCAATGCAGTC
GCCTCGAAATCGTCGCTCAAACATAACCATCTACAAGCCCTCCACAAAGT
TGGTCATTCAACGTACGGCCAATGGCTTAGAAACGCCATCCAAGGCTTCG
GAGCAGATAAGGCACAAGAGGTCCGTCGATCACCTGGAGTGGTTCAATGA
CTTTGCCAGTTCCTTGGTGCGTCCCTCGCCACTGGGCACTAGAGCCCAGA
AGCAGCAGCGTGCATCAGCCAAGCCATCGGCATTCAAGCGTCAGGCTGAG
CTGGAGGAGCCGGCTCGTCGGGAACCATGGTTCCTGGAGCAGTCAGCTTC
GCGACTGACTCGCCCCGCTCCACTTAAGAAGGATGCACTCTCGCGGAAGA
ACAAGAAGAGTCCTTTGTTCCGAAAGAGCGCCAAGAGCAAGGCGTCCAAG
GAGCAGTCGCGCAAGCAACCGGAGCGAGAGATTCGGCCACTCCGCGATGC
CTTGCAGGTGGTGGAGCGGATACCCAAGGTGCTTCAAGATACGGTCAGTC
ATCTGTCCTCCGATCCACGCACTGGGGATGTCTTTAGCCTGAATATTAGA
AACGAGGATGTGCCGCAGAAAAAGGATCGCCAGCCTGAGGATCGTGTGCC
ACGCAGGCCTAGCGCCACCTTCCGTGGTTTCCGGCGCAATGAGATCATCC
CCGAAGCCGTCACCCTGGCTGCCCCAATGGACCTTGCCCCACGAGCTCCA
CTTCCCGGCCAGCGTCCAGGTGGACTCCTGCTGCCCTGGCTGAGGCAGCG
GCGACTGATGCGTTTGCAGCAGGCACAGGGAAATCTGTAGAAGCTTTCTA
GACCAT
BS14304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:34:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14834-RA | 1224 | CG14834-PA | 1..1224 | 17..1240 | 6075 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14834-RA | 1426 | CG14834-RA | 79..1303 | 17..1241 | 6080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7345821..7347045 | 1241..17 | 6080 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:34:46 has no hits.
BS14304.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:23 Download gff for
BS14304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14834-RA | 79..1302 | 17..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:38 Download gff for
BS14304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14834-RA | 79..1302 | 17..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:55 Download gff for
BS14304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14834-RA | 79..1302 | 17..1240 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:55 Download gff for
BS14304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7345822..7347045 | 17..1240 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:38 Download gff for
BS14304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7338922..7340145 | 17..1240 | 99 | | Minus |
BS14304.pep Sequence
Translation from 16 to 1239
> BS14304.pep
MMTEKIRKSSLSGYTVILLLAAIQFQASVVSSTTTKPPSTLATSTKASRN
VNPLTESKLEKNCKALCEHCGCLGFYCGEECLCECNDDQSDTECIRTMQM
NAKTLNLPFEIVIQGPSSNRFVRNAQQFEQKRDLVARSASTSMQSPRNRR
SNITIYKPSTKLVIQRTANGLETPSKASEQIRHKRSVDHLEWFNDFASSL
VRPSPLGTRAQKQQRASAKPSAFKRQAELEEPARREPWFLEQSASRLTRP
APLKKDALSRKNKKSPLFRKSAKSKASKEQSRKQPEREIRPLRDALQVVE
RIPKVLQDTVSHLSSDPRTGDVFSLNIRNEDVPQKKDRQPEDRVPRRPSA
TFRGFRRNEIIPEAVTLAAPMDLAPRAPLPGQRPGGLLLPWLRQRRLMRL
QQAQGNL*
BS14304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:32:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14834-PA | 407 | CG14834-PA | 1..407 | 1..407 | 2083 | 100 | Plus |
