Clone Sequence Records
BS14306.3prime Sequence
477 bp (466 high quality bases) assembled on 2006-10-13
> BS14306.3prime
ATGGTCTAGAAAGCTTCTACTTCTGGCTTATCATCCATACGAATTCCTCG
TAGTTGATCATGCCATCCCCATCAAAATCAGCCTCGCGAATCATCTCATC
GATCTCCTCGTCGGTGACCTTTTCGCCCAGATTGATCATCACAAAGCGAA
GCTCAGCTGGTGATATAAAGCCATCGCCATCACGATCAAAAATCTTGAAT
GCCTCACGCATTTCCTCCTCAGTGTCAGTTTCCCGCATTTGCTTGGCCAT
TATACCGCAGAACTCAGTGAAGTTCAGTTGGCCATTGTTGTTGTTCTCGG
CCTCAGCTATCAAATCTTGCAACTCGGCCTCCGTTGGATTCTGGCCCAAG
GTGCGCATCAATGTGCCCAGCTCACGGGTGGCGATCTTGCCGGTTCCCTC
CTTGTCGAACTGGACAAAGGCATCCTTGAACTCGGCAATCTGCTCCTCCG
TTAGTTCGGACATGTCGACTGATAACT
BS14306.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17769-PA | 447 | And-RA | 1..447 | 463..17 | 2235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acam-RB | 1224 | CG17769-RB | 734..1180 | 463..17 | 2235 | 100 | Minus |
| Acam-RA | 596 | CG17769-RA | 106..552 | 463..17 | 2235 | 100 | Minus |
| CG17770-RA | 1224 | CG17770-RA | 734..1180 | 463..17 | 2235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25812644..25813090 | 463..17 | 2235 | 100 | Minus |
| 2R | 25286936 | 2R | 12269339..12269412 | 142..69 | 205 | 85.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:29:02 has no hits.
BS14306.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:03 Download gff for
BS14306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17769-PA | 1..447 | 17..463 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:55 Download gff for
BS14306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17770-RA | 725..1190 | 8..475 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:15 Download gff for
BS14306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17770-RA | 725..1190 | 8..475 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:15 Download gff for
BS14306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25812635..25813100 | 8..475 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:55 Download gff for
BS14306.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21638357..21638822 | 8..475 | 98 | | Minus |
BS14306.5prime Sequence
477 bp (435 high quality bases) assembled on 2006-10-13
> BS14306.5prime
GAAGTTATCAGTCGACATGTCCGAACTAACGGAGGAGCAGATTGCCGAGT
TCAAGGATGCCTTTGTCCAGTTCGACAAGGAGGGAACCGGCAAGATCGCC
ACCCGTGAGCTGGGCACATTGATGCGCACCTTGGGCCAGAATCCAACGGA
GGCCGAGTTGCAAGATTTGATAGCTGAGGCCGAGAACAACAACAATGGCC
AACTGAACTTCACTGAGTTCTGCGGTATAATGGCCAAGCAAATGCGGGAA
ACTGACACTGAGGAGGAAATGCGTGAGGCATTCAAGATTTTTGATCGTGA
TGGCGATGGCTTTATATCACCAGCTGAGCTTCGCTTTGTGATGATCAATC
TGGGCGAAAAGGTCACCGACGAGGAGATCGATGAGATGATTCGCGAGGCT
GATTTTGATGGGGATGGCATGATCAACTACGAGGAATTCGTATGGATGAT
AAGCCAGAAGTAGAAGCTTTCTAGACC
BS14306.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17769-PA | 447 | And-RA | 1..447 | 17..463 | 2235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acam-RB | 1224 | CG17769-RB | 734..1180 | 17..463 | 2235 | 100 | Plus |
| Acam-RA | 596 | CG17769-RA | 106..552 | 17..463 | 2235 | 100 | Plus |
| CG17770-RA | 1224 | CG17770-RA | 734..1180 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25812644..25813090 | 17..463 | 2235 | 100 | Plus |
| 2R | 25286936 | 2R | 12269339..12269412 | 338..411 | 205 | 85.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:38:22 has no hits.
BS14306.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:03 Download gff for
BS14306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17769-PA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:26 Download gff for
BS14306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17770-RA | 725..1190 | 5..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:39:52 Download gff for
BS14306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17770-RA | 725..1190 | 5..472 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:39:52 Download gff for
BS14306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25812635..25813100 | 5..472 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:26 Download gff for
BS14306.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21638357..21638822 | 5..472 | 98 | | Plus |
BS14306.complete Sequence
479 bp assembled on 2006-11-01
GenBank Submission: FJ637632
> BS14306.complete
GAAGTTATCAGTCGACATGTCCGAACTAACGGAGGAGCAGATTGCCGAGT
TCAAGGATGCCTTTGTCCAGTTCGACAAGGAGGGAACCGGCAAGATCGCC
ACCCGTGAGCTGGGCACATTGATGCGCACCTTGGGCCAGAATCCAACGGA
GGCCGAGTTGCAAGATTTGATAGCTGAGGCCGAGAACAACAACAATGGCC
AACTGAACTTCACTGAGTTCTGCGGTATAATGGCCAAGCAAATGCGGGAA
ACTGACACTGAGGAGGAAATGCGTGAGGCATTCAAGATTTTTGATCGTGA
TGGCGATGGCTTTATATCACCAGCTGAGCTTCGCTTTGTGATGATCAATC
TGGGCGAAAAGGTCACCGACGAGGAGATCGATGAGATGATTCGCGAGGCT
GATTTTGATGGGGATGGCATGATCAACTACGAGGAATTCGTATGGATGAT
AAGCCAGAAGTAGAAGCTTTCTAGACCAT
BS14306.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acam-RB | 447 | CG17769-PB | 1..447 | 17..463 | 2235 | 100 | Plus |
| Acam-RA | 447 | CG17769-PA | 1..447 | 17..463 | 2235 | 100 | Plus |
| Cam-RD | 450 | CG8472-PD | 325..428 | 338..441 | 235 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acam-RB | 1224 | CG17769-RB | 734..1180 | 17..463 | 2235 | 100 | Plus |
| Acam-RA | 596 | CG17769-RA | 106..552 | 17..463 | 2235 | 100 | Plus |
| CG17770-RA | 1224 | CG17770-RA | 734..1180 | 17..463 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25812644..25813090 | 17..463 | 2235 | 100 | Plus |
| 2R | 25286936 | 2R | 12269339..12269412 | 338..411 | 205 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:11:31 has no hits.
BS14306.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:57 Download gff for
BS14306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| And-RA | 1..447 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:36 Download gff for
BS14306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| And-RA | 97..562 | 5..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:14 Download gff for
BS14306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17770-RA | 734..1180 | 17..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:57 Download gff for
BS14306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| And-RA | 97..562 | 5..472 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:20 Download gff for
BS14306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17770-RA | 734..1180 | 17..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:20 Download gff for
BS14306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25812644..25813090 | 17..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:14 Download gff for
BS14306.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21638366..21638812 | 17..463 | 100 | | Plus |
BS14306.pep Sequence
Translation from 16 to 462
> BS14306.pep
MSELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQD
LIAEAENNNNGQLNFTEFCGIMAKQMRETDTEEEMREAFKIFDRDGDGFI
SPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVWMISQK*
BS14306.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acam-PB | 148 | CG17769-PB | 1..148 | 1..148 | 761 | 100 | Plus |
| Acam-PA | 148 | CG17769-PA | 1..148 | 1..148 | 761 | 100 | Plus |
| Cam-PD | 149 | CG8472-PD | 4..149 | 3..148 | 536 | 67.8 | Plus |
| Cam-PC | 149 | CG8472-PC | 4..149 | 3..148 | 536 | 67.8 | Plus |
| Cam-PE | 149 | CG8472-PE | 4..149 | 3..148 | 536 | 67.8 | Plus |
