Clone Sequence Records
BS14309.3prime Sequence
490 bp (463 high quality bases) assembled on 2006-10-13
> BS14309.3prime
ATGGTCTAGAAAGCTTTCAATTAGAAAATATAGCTTTACCCTGCTCATTA
TACTCCCATCCCTCCACCTGTCCTTTAACTTCTGGATCTTGGAGATTTCC
TGGCTGGTCGTGATTGTGCAGCATTTGTTGCTGCTGCTGCTGCTGCTGCC
CAAAAGTTCCACCGATGTCCTCCTCGTAGGATCTTCGGTCCCTTACAGCC
TTGTTCCTTGCTTCGTTGGCGGCACAGGCAGCCCTGTAGGCGGCCTTCCT
CGTGTTGGTATAGTCCAGTTTGGCGGAGCGCAGCTGCTGCATCAGCATCT
CTGCTCTCTGGCGAGCGGTTTCCACCAGCTGGTTCTTTTCGCACAACTCC
TGCTGGGCACCGGATGCAGCTGCCTCAGCATTGCTCACTGCCTCCTCGGC
AACTTTTACTGAGCTCCGAAGCGATTGCAACAGCGTTTGACATTGCTTCG
CTGTGGCAACAGCGACATTGACATTTGTCTGTGACCCAAC
BS14309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14354-PA | 897 | CG14354-RA | 424..897 | 490..17 | 2345 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14354-RA | 1041 | CG14354-RA | 503..976 | 490..17 | 2355 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25816045..25816509 | 481..17 | 2325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:32:34 has no hits.
BS14309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:04 Download gff for
BS14309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14354-PA | 424..897 | 17..490 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:45:30 Download gff for
BS14309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14354-RA | 503..976 | 17..490 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:33:26 Download gff for
BS14309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14354-RA | 503..976 | 17..490 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:33:26 Download gff for
BS14309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25816045..25816509 | 17..481 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:45:30 Download gff for
BS14309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21641767..21642231 | 17..481 | 100 | | Minus |
BS14309.complete Sequence
929 bp assembled on 2010-07-02
GenBank Submission: KX802382
> BS14309.complete
GAAGTTATCAGTCGACATGCGCATTGCCTTGCCACGGCTCCTGTGCCACA
TCCTTCTCTATCACCTGCTCATGATCTCGTCCAGCCTTGCAGCCTGCTAC
CAACGTCATTCGAGTTGCCCGCAGAACCAGCAGCAGTCCAGATCCCAGCT
TCTGGACCAGTCCGCGGACCTCACCATGGGCATAAGACAAGGCAACTCCA
AGCAGACCGCCTCGAATATTGCCCAGAAGGCTGCCCAGGAGGCCAAGAAG
GCGTCGGACACTCAGGCACCAGCTGCTCTGGCTGCTGCCCGCCAGGTGAA
ACACCAGCTGGCCGAGAAAGCCATTGCTGCGGCCAAGGCCGCTGAGGCGG
CGCTGGCGGGGAAACAACAACTTATGGAGCAGCTGCAGGACGAGGTGCAC
GAGGCGGAGATTATTGTGCAGGAGGAAACCTACTCACTGGTTGGTTCACA
GACAAATGTCAATGTCGCTGTTGCCACAGCGAAGCAATGTCAAACGCTGT
TGCAATCGCTTCGGAGCTCAGTAAAAGTTGCCGAGGAGGCAGTGAGCAAT
GCTGAGGCAGCTGCATCCGGTGCCCAGCAGGAGTTGTGCGAAAAGAACCA
GCTGGTGGAAACCGCTCGCCAGAGAGCAGAGATGCTGATGCAGCAGCTGC
GCTCCGCCAAACTGGACTATACCAACACGAGGAAGGCCGCCTACAGGGCT
GCCTGTGCCGCCAACGAAGCAAGGAACAAGGCTGTAAGGGACCGAAGATC
CTACGAGGAGGACATCGGTGGAACTTTTGGGCAGCAGCAGCAGCAGCAGC
AACAAATGCTGCACAATCACGACCAGCCAGGAAATCTCCAAGATCCAGAA
GTTAAAGGACAGGTGGAGGGATGGGAGTATAATGAGCAGGGTAAAGCTAT
ATTTTCTAATTGAAAGCTTTCTAGACCAT
BS14309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14354-RA | 897 | CG14354-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
| CG11694-RA | 786 | CG11694-PA | 205..413 | 218..426 | 250 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14354-RA | 1041 | CG14354-RA | 80..976 | 17..913 | 4485 | 100 | Plus |
| CG11694-RA | 935 | CG11694-RA | 274..482 | 218..426 | 250 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25816045..25816509 | 449..913 | 2325 | 100 | Plus |
| 3R | 32079331 | 3R | 25815558..25815992 | 17..451 | 2175 | 100 | Plus |
| 3R | 32079331 | 3R | 8311656..8311864 | 426..218 | 250 | 74.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:18:51 has no hits.
BS14309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:24:35 Download gff for
BS14309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14354-RA | 80..975 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:21 Download gff for
BS14309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14354-RA | 80..975 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:32 Download gff for
BS14309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14354-RA | 80..975 | 17..912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:32 Download gff for
BS14309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25815558..25815992 | 17..451 | 100 | -> | Plus |
| 3R | 25816048..25816508 | 452..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:21 Download gff for
BS14309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21641280..21641714 | 17..451 | 100 | -> | Plus |
| arm_3R | 21641770..21642230 | 452..912 | 100 | | Plus |
BS14309.pep Sequence
Translation from 16 to 912
> BS14309.pep
MRIALPRLLCHILLYHLLMISSSLAACYQRHSSCPQNQQQSRSQLLDQSA
DLTMGIRQGNSKQTASNIAQKAAQEAKKASDTQAPAALAAARQVKHQLAE
KAIAAAKAAEAALAGKQQLMEQLQDEVHEAEIIVQEETYSLVGSQTNVNV
AVATAKQCQTLLQSLRSSVKVAEEAVSNAEAAASGAQQELCEKNQLVETA
RQRAEMLMQQLRSAKLDYTNTRKAAYRAACAANEARNKAVRDRRSYEEDI
GGTFGQQQQQQQQMLHNHDQPGNLQDPEVKGQVEGWEYNEQGKAIFSN*
BS14309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14354-PA | 298 | CG14354-PA | 1..298 | 1..298 | 1481 | 100 | Plus |
| CG11694-PA | 261 | CG11694-PA | 17..248 | 11..247 | 494 | 49.8 | Plus |
| CG14840-PA | 300 | CG14840-PA | 81..267 | 58..244 | 485 | 56.1 | Plus |
| CG14841-PA | 274 | CG14841-PA | 32..266 | 16..245 | 427 | 44.3 | Plus |
| CG34459-PC | 305 | CG34459-PC | 112..295 | 56..239 | 416 | 47.8 | Plus |
