Clone BS14314 Report

Search the DGRC for BS14314

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:14
Vector:pDNR-Dual
Associated Gene/Transcriptasrij-RA
Protein status:BS14314.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14314.3prime Sequence

612 bp (479 high quality bases) assembled on 2006-10-13

> BS14314.3prime
ATGGTCTAGAAAGCTTTTAATCAGTCCAGGAGTCGCCGTATTGGTTCTTC
CTTCCAGCGGGTTCACTTTGTGCCTGCTCCACGGGTCGCTGTTGAACGGC
AACTGGTGGTTCGTAAGGTCGCGAGTATGGACTCTGCTGGTGCTTTGAGT
ACTCTTCTCGGTTCCTTCGTCGCAGGTCCTCGTAAGACTGGCCCGGCTTA
GACGGCTCCAAGGGCAACTCCGCCTCCAGCATTGAACCAGAGTCCAGGGT
GGGGCGGTAGATGTCGTCAAGGCCGGACAAAGTAGGGCGCGATTCCGTGT
CCAGATTGAGAGAAGTGCTCCTCCCGGGCTGATACGCCTCATCGCTGTAC
ACGTCCGCCGAGCTCGGCGAGAAGGGGGCCAGAGTGAAGGCCCTGCCCAG
ATTCTCGTCCGGTGTGATGGAGCTGATGACACCGCCGCCCTGTCTACGCT
GACGCAGCAGCTCGCCCAGATGGGAGTTGGGTAGGCGCATGATCTTCTCG
GCACACTTCTGCTGGTAACTGAACTTGCCCACAAAGTAGCCCAGAATGAC
GCCCATCACGAACCTTGGGCACGGCGCCGTACTTGACGTGTCCCTGCAAA
TAGCCGTTCTTG

BS14314.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13533-PA 774 asrij-RA 230..774 561..17 2650 99.4 Minus
CG13533-PA 774 asrij-RA 180..230 612..562 255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
asrij-RA 1064 CG13533-RA 425..1019 612..17 2910 99.3 Minus
asrij-RB 904 CG13533-RB 262..859 612..17 2870 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22886878..22887248 612..241 1810 99.7 Minus
2R 25286936 2R 22887310..22887533 240..17 1075 98.7 Minus
Blast to na_te.dros performed on 2015-02-11 17:23:43 has no hits.

BS14314.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:08 Download gff for BS14314.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13533-PA 180..774 17..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:10 Download gff for BS14314.3prime
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 425..1019 17..612 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:09 Download gff for BS14314.3prime
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 425..1019 17..612 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:09 Download gff for BS14314.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22887310..22887533 17..240 98   Minus
2R 22886878..22887248 241..612 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:10 Download gff for BS14314.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18774401..18774771 241..612 99 -> Minus
arm_2R 18774833..18775056 17..240 98   Minus

BS14314.5prime Sequence

587 bp (497 high quality bases) assembled on 2006-10-13

> BS14314.5prime
GAAGTTATCAGTCGACATGGACTCCCCGCTGAACGATGGCTCTCACCATC
CACCGCCGCACGCTCCCCACCCCCTGGCGGACTATCAGTTTTCTGCGGAG
GAGGTGAAGGCGTTACGTGAGTGCAACACTGAGTCTTTCTTCCAGCGCAG
CCTGCCTTTCGGCACTGGACTGGGCCTGCTGGCCTACTTCGGCGTCAAGA
ACGGCTATTTGCAGGGACACGTCAAGTACGGCGCCGTGCCCAAGGTCGTG
ATGGGCGTCATTCTGGGCTACTTTGTGGGCAAGTTCAGTTACCAGCAGAA
GTGTGCCGAGAAGATCATGCGCCTACCCAACTCCCATCTGGGCGAGCTGC
TGCGTCAGCGTAGACAGGGCGGCGGTGTCATCAGCTCCATCACACCGGAC
GAGAATCTGGGCAGGGCCTTCACTCTGGCCCCCTTCTCGCCGAGCTCGGC
GGACGTGTACAGCGATGAGGCGTATCAGCCCGGGAGGAGCACTTCTCTCA
ATCTGGACACGGAATCGCGCCCTACTTTGTCCGGGCTTGACGACATCTAC
CGCCCCACCCTGGACTCTGGGTCATTGCTGGAGGCGG

BS14314.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13533-PA 774 asrij-RA 1..569 17..585 2770 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
asrij-RA 1064 CG13533-RA 245..814 16..585 2805 99.5 Plus
asrij-RB 904 CG13533-RB 82..654 16..585 2765 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22886758..22887248 76..566 2440 99.8 Plus
2R 25286936 2R 22886642..22886703 16..77 310 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:16:31 has no hits.

BS14314.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:09 Download gff for BS14314.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13533-PA 1..571 17..587 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:20 Download gff for BS14314.5prime
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 239..816 6..587 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:04 Download gff for BS14314.5prime
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 239..816 6..587 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:04 Download gff for BS14314.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22886636..22886702 6..76 94 -> Plus
2R 22886759..22887258 77..575 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:20 Download gff for BS14314.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18774159..18774225 6..76 94 -> Plus
arm_2R 18774282..18774781 77..575 99   Plus

BS14314.complete Sequence

806 bp assembled on 2006-11-01

GenBank Submission: FJ637633

> BS14314.complete
GAAGTTATCAGTCGACATGGACTCCCCGCTGAACGATGGCTCTCACCATC
CACCGCCGCACGCTCCCCACCCCCTGGCGGACTATCAGTTTTCTGCGGAG
GAGGTGAAGGCGTTACGTGAGTGCAACACTGAGTCTTTCTTCCAGCGCAG
CCTGCCTTTCGGCACTGGACTGGGCCTGCTGGCCTACTTCGGCGTCAAGA
ACGGCTATTTGCAGGGACACGTCAAGTACGGCGCCGTGCCCAAGGTCGTG
ATGGGCGTCATTCTGGGCTACTTTGTGGGCAAGTTCAGTTACCAGCAGAA
GTGTGCCGAGAAGATCATGCGCCTACCCAACTCCCATCTGGGCGAGCTGC
TGCGTCAGCGTAGACAGGGCGGCGGTGTCATCAGCTCCATCACACCGGAC
GAGAATCTGGGCAGGGCCTTCACTCTGGCCCCCTTCTCGCCGAGCTCGGC
GGACGTGTACAGCGATGAGGCGTATCAGCCCGGGAGGAGCACTTCTCTCA
ATCTGGACACGGAATCGCGCCCTACTTTGTCCGGCCTTGACGACATCTAC
CGCCCCACCCTGGACTCTGGTTCAATGCTGGAGGCGGAGTTGCCCTTGGA
GCCGTCTAAGCCGGGCCAGTCTTACGAGGACCTGCGACGAAGGAACCGAG
AAGAGTACTCAAAGCACCAGCAGAGTCCATACTCGCGACCTTACGAACCA
CCAGTTGCCGTTCAACAGCGACCCGTGGAGCAGGCACAAAGTGAACCCGC
TGGAAGGAAGAACCAATACGGCGACTCCTGGACTGATTAAAAGCTTTCTA
GACCAT

BS14314.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:04
Subject Length Description Subject Range Query Range Score Percent Strand
asrij-RA 774 CG13533-PA 1..774 17..790 3825 99.6 Plus
asrij-RB 777 CG13533-PB 1..777 17..790 3760 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
asrij-RA 1064 CG13533-RA 245..1019 16..790 3830 99.6 Plus
asrij-RB 904 CG13533-RB 82..859 16..790 3765 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22886758..22887248 76..566 2455 100 Plus
2R 25286936 2R 22887310..22887533 567..790 1075 98.7 Plus
2R 25286936 2R 22886642..22886703 16..77 310 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:14:03 has no hits.

BS14314.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:58 Download gff for BS14314.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:21 Download gff for BS14314.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 239..1019 6..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:11:24 Download gff for BS14314.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 246..1017 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:58 Download gff for BS14314.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 239..1019 6..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:49 Download gff for BS14314.complete
Subject Subject Range Query Range Percent Splice Strand
asrij-RA 246..1017 17..788 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:49 Download gff for BS14314.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22886643..22886702 17..76 100 -> Plus
2R 22886759..22887248 77..566 100 -> Plus
2R 22887310..22887531 567..788 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:11:24 Download gff for BS14314.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18774166..18774225 17..76 100 -> Plus
arm_2R 18774282..18774771 77..566 100 -> Plus
arm_2R 18774833..18775054 567..788 98   Plus

BS14314.pep Sequence

Translation from 16 to 789

> BS14314.pep
MDSPLNDGSHHPPPHAPHPLADYQFSAEEVKALRECNTESFFQRSLPFGT
GLGLLAYFGVKNGYLQGHVKYGAVPKVVMGVILGYFVGKFSYQQKCAEKI
MRLPNSHLGELLRQRRQGGGVISSITPDENLGRAFTLAPFSPSSADVYSD
EAYQPGRSTSLNLDTESRPTLSGLDDIYRPTLDSGSMLEAELPLEPSKPG
QSYEDLRRRNREEYSKHQQSPYSRPYEPPVAVQQRPVEQAQSEPAGRKNQ
YGDSWTD*

BS14314.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
asrij-PA 257 CG13533-PA 1..257 1..257 1365 100 Plus
asrij-PB 258 CG13533-PB 1..258 1..257 1353 99.6 Plus