Clone Sequence Records
BS14314.3prime Sequence
612 bp (479 high quality bases) assembled on 2006-10-13
> BS14314.3prime
ATGGTCTAGAAAGCTTTTAATCAGTCCAGGAGTCGCCGTATTGGTTCTTC
CTTCCAGCGGGTTCACTTTGTGCCTGCTCCACGGGTCGCTGTTGAACGGC
AACTGGTGGTTCGTAAGGTCGCGAGTATGGACTCTGCTGGTGCTTTGAGT
ACTCTTCTCGGTTCCTTCGTCGCAGGTCCTCGTAAGACTGGCCCGGCTTA
GACGGCTCCAAGGGCAACTCCGCCTCCAGCATTGAACCAGAGTCCAGGGT
GGGGCGGTAGATGTCGTCAAGGCCGGACAAAGTAGGGCGCGATTCCGTGT
CCAGATTGAGAGAAGTGCTCCTCCCGGGCTGATACGCCTCATCGCTGTAC
ACGTCCGCCGAGCTCGGCGAGAAGGGGGCCAGAGTGAAGGCCCTGCCCAG
ATTCTCGTCCGGTGTGATGGAGCTGATGACACCGCCGCCCTGTCTACGCT
GACGCAGCAGCTCGCCCAGATGGGAGTTGGGTAGGCGCATGATCTTCTCG
GCACACTTCTGCTGGTAACTGAACTTGCCCACAAAGTAGCCCAGAATGAC
GCCCATCACGAACCTTGGGCACGGCGCCGTACTTGACGTGTCCCTGCAAA
TAGCCGTTCTTG
BS14314.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13533-PA | 774 | asrij-RA | 230..774 | 561..17 | 2650 | 99.4 | Minus |
CG13533-PA | 774 | asrij-RA | 180..230 | 612..562 | 255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-RA | 1064 | CG13533-RA | 425..1019 | 612..17 | 2910 | 99.3 | Minus |
asrij-RB | 904 | CG13533-RB | 262..859 | 612..17 | 2870 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22886878..22887248 | 612..241 | 1810 | 99.7 | Minus |
2R | 25286936 | 2R | 22887310..22887533 | 240..17 | 1075 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:23:43 has no hits.
BS14314.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:08 Download gff for
BS14314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13533-PA | 180..774 | 17..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:10 Download gff for
BS14314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 425..1019 | 17..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:09 Download gff for
BS14314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 425..1019 | 17..612 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:09 Download gff for
BS14314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22887310..22887533 | 17..240 | 98 | | Minus |
2R | 22886878..22887248 | 241..612 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:10 Download gff for
BS14314.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18774401..18774771 | 241..612 | 99 | -> | Minus |
arm_2R | 18774833..18775056 | 17..240 | 98 | | Minus |
BS14314.5prime Sequence
587 bp (497 high quality bases) assembled on 2006-10-13
> BS14314.5prime
GAAGTTATCAGTCGACATGGACTCCCCGCTGAACGATGGCTCTCACCATC
CACCGCCGCACGCTCCCCACCCCCTGGCGGACTATCAGTTTTCTGCGGAG
GAGGTGAAGGCGTTACGTGAGTGCAACACTGAGTCTTTCTTCCAGCGCAG
CCTGCCTTTCGGCACTGGACTGGGCCTGCTGGCCTACTTCGGCGTCAAGA
ACGGCTATTTGCAGGGACACGTCAAGTACGGCGCCGTGCCCAAGGTCGTG
ATGGGCGTCATTCTGGGCTACTTTGTGGGCAAGTTCAGTTACCAGCAGAA
GTGTGCCGAGAAGATCATGCGCCTACCCAACTCCCATCTGGGCGAGCTGC
TGCGTCAGCGTAGACAGGGCGGCGGTGTCATCAGCTCCATCACACCGGAC
GAGAATCTGGGCAGGGCCTTCACTCTGGCCCCCTTCTCGCCGAGCTCGGC
GGACGTGTACAGCGATGAGGCGTATCAGCCCGGGAGGAGCACTTCTCTCA
ATCTGGACACGGAATCGCGCCCTACTTTGTCCGGGCTTGACGACATCTAC
CGCCCCACCCTGGACTCTGGGTCATTGCTGGAGGCGG
BS14314.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13533-PA | 774 | asrij-RA | 1..569 | 17..585 | 2770 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-RA | 1064 | CG13533-RA | 245..814 | 16..585 | 2805 | 99.5 | Plus |
asrij-RB | 904 | CG13533-RB | 82..654 | 16..585 | 2765 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:16:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22886758..22887248 | 76..566 | 2440 | 99.8 | Plus |
2R | 25286936 | 2R | 22886642..22886703 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:16:31 has no hits.
BS14314.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:09 Download gff for
BS14314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13533-PA | 1..571 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:20 Download gff for
BS14314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..816 | 6..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:04 Download gff for
BS14314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..816 | 6..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:04 Download gff for
BS14314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22886636..22886702 | 6..76 | 94 | -> | Plus |
2R | 22886759..22887258 | 77..575 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:20 Download gff for
BS14314.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18774159..18774225 | 6..76 | 94 | -> | Plus |
arm_2R | 18774282..18774781 | 77..575 | 99 | | Plus |
BS14314.complete Sequence
806 bp assembled on 2006-11-01
GenBank Submission: FJ637633
> BS14314.complete
GAAGTTATCAGTCGACATGGACTCCCCGCTGAACGATGGCTCTCACCATC
CACCGCCGCACGCTCCCCACCCCCTGGCGGACTATCAGTTTTCTGCGGAG
GAGGTGAAGGCGTTACGTGAGTGCAACACTGAGTCTTTCTTCCAGCGCAG
CCTGCCTTTCGGCACTGGACTGGGCCTGCTGGCCTACTTCGGCGTCAAGA
ACGGCTATTTGCAGGGACACGTCAAGTACGGCGCCGTGCCCAAGGTCGTG
ATGGGCGTCATTCTGGGCTACTTTGTGGGCAAGTTCAGTTACCAGCAGAA
GTGTGCCGAGAAGATCATGCGCCTACCCAACTCCCATCTGGGCGAGCTGC
TGCGTCAGCGTAGACAGGGCGGCGGTGTCATCAGCTCCATCACACCGGAC
GAGAATCTGGGCAGGGCCTTCACTCTGGCCCCCTTCTCGCCGAGCTCGGC
GGACGTGTACAGCGATGAGGCGTATCAGCCCGGGAGGAGCACTTCTCTCA
ATCTGGACACGGAATCGCGCCCTACTTTGTCCGGCCTTGACGACATCTAC
CGCCCCACCCTGGACTCTGGTTCAATGCTGGAGGCGGAGTTGCCCTTGGA
GCCGTCTAAGCCGGGCCAGTCTTACGAGGACCTGCGACGAAGGAACCGAG
AAGAGTACTCAAAGCACCAGCAGAGTCCATACTCGCGACCTTACGAACCA
CCAGTTGCCGTTCAACAGCGACCCGTGGAGCAGGCACAAAGTGAACCCGC
TGGAAGGAAGAACCAATACGGCGACTCCTGGACTGATTAAAAGCTTTCTA
GACCAT
BS14314.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-RA | 774 | CG13533-PA | 1..774 | 17..790 | 3825 | 99.6 | Plus |
asrij-RB | 777 | CG13533-PB | 1..777 | 17..790 | 3760 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-RA | 1064 | CG13533-RA | 245..1019 | 16..790 | 3830 | 99.6 | Plus |
asrij-RB | 904 | CG13533-RB | 82..859 | 16..790 | 3765 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22886758..22887248 | 76..566 | 2455 | 100 | Plus |
2R | 25286936 | 2R | 22887310..22887533 | 567..790 | 1075 | 98.7 | Plus |
2R | 25286936 | 2R | 22886642..22886703 | 16..77 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:14:03 has no hits.
BS14314.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:58 Download gff for
BS14314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:56:21 Download gff for
BS14314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..1019 | 6..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:11:24 Download gff for
BS14314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 246..1017 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:58 Download gff for
BS14314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 239..1019 | 6..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:49 Download gff for
BS14314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asrij-RA | 246..1017 | 17..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:49 Download gff for
BS14314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22886643..22886702 | 17..76 | 100 | -> | Plus |
2R | 22886759..22887248 | 77..566 | 100 | -> | Plus |
2R | 22887310..22887531 | 567..788 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:11:24 Download gff for
BS14314.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18774166..18774225 | 17..76 | 100 | -> | Plus |
arm_2R | 18774282..18774771 | 77..566 | 100 | -> | Plus |
arm_2R | 18774833..18775054 | 567..788 | 98 | | Plus |
BS14314.pep Sequence
Translation from 16 to 789
> BS14314.pep
MDSPLNDGSHHPPPHAPHPLADYQFSAEEVKALRECNTESFFQRSLPFGT
GLGLLAYFGVKNGYLQGHVKYGAVPKVVMGVILGYFVGKFSYQQKCAEKI
MRLPNSHLGELLRQRRQGGGVISSITPDENLGRAFTLAPFSPSSADVYSD
EAYQPGRSTSLNLDTESRPTLSGLDDIYRPTLDSGSMLEAELPLEPSKPG
QSYEDLRRRNREEYSKHQQSPYSRPYEPPVAVQQRPVEQAQSEPAGRKNQ
YGDSWTD*
BS14314.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asrij-PA | 257 | CG13533-PA | 1..257 | 1..257 | 1365 | 100 | Plus |
asrij-PB | 258 | CG13533-PB | 1..258 | 1..257 | 1353 | 99.6 | Plus |