Clone Sequence Records
BS14316.complete Sequence
959 bp assembled on 2010-02-09
GenBank Submission: KX805269
> BS14316.complete
GAAGTTATCAGTCGACATGCCGGAATTTGAGAACTTTAACGTAAAAACCA
CAATTGACTGCAAACAAGGTGCAGTGCGAGCTGTGCGCTATAATGTTGAT
GGCACTTATTGCTTGAGTTGTGGATCTGACAAGAAGATAAAGCTGTGGAA
TCCGGCATCGGGATTACTGCTTAAGACTTATGGTGGTCATGCGGATGAAG
TCACCGATGCGGCGGGAAGCTGTGATAGTAGCTATATCGTTTCCGCCAGC
TTGGATAAAAGCATTATCTACTGGGACGTGTCAACGGGAGCACCAGTACG
GCGCCTGCGTAGCCATGCCGGAGGTGTTAGATGCGTCTGCTTCAACGAGG
ACTCCTCGATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGG
GACATTCGAACGCGTCGCCTGGATCCCGTTCAGGTGATGAAGGAGGCCCG
GGACTGCATCACCACGGTGGCAACCAACGAGAATCGCATCTACGCCGCCT
CCTTGGACGGATGTGTGAGGACCTACGATATTCGGGTGGGCGAACTTACC
TGCGACAAAATTGGTGAACCCATCACATATCTGGCGCAGACGCGCGACGA
GCAATGTCTGGTGGCCGGCTGTCAGGATAGTGTGGTTCGTCTGCTGGACT
GTGAGACCGGCGGATTACTCTCCGAGTACAGGGGACATCGCGGCGATGAC
TACCACATCGAGTGCGGAATACTGTCAAACGATGCCCAAATAGTCACGGG
CTCCAGTGATGGAGACGCCTTTGTTTACGACCTGCTCGATGGGAAAGTAC
TGCAGCGCATTCGCATAAGTGATAATGGCGGCGTCGTCCACTCCTTAGCC
ACTCATCCCAAGCGACAGGAAATGCTTTTCGCCAGACGACGGGACATGTA
TGTCTTCTCGACAGATTTGCAAATCGAAGAGGAGCAATTATAGAAGCTTT
CTAGACCAT
BS14316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-RA | 927 | CG4935-PA | 1..927 | 17..943 | 4635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-RA | 1083 | CG4935-RA | 60..986 | 17..943 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16262649..16263182 | 287..820 | 2670 | 100 | Plus |
2L | 23513712 | 2L | 16263262..16263386 | 819..943 | 625 | 100 | Plus |
2L | 23513712 | 2L | 16262338..16262458 | 95..215 | 605 | 100 | Plus |
2L | 23513712 | 2L | 16262200..16262282 | 17..99 | 400 | 98.8 | Plus |
2L | 23513712 | 2L | 16262520..16262594 | 214..288 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:24:48 has no hits.
BS14316.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:17 Download gff for
BS14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 1..927 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:06 Download gff for
BS14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 78..1004 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:49 Download gff for
BS14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 60..986 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:26 Download gff for
BS14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 78..1004 | 17..943 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:10 Download gff for
BS14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 60..986 | 17..943 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:10 Download gff for
BS14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16262200..16262278 | 17..95 | 100 | -> | Plus |
2L | 16262339..16262457 | 96..214 | 100 | -> | Plus |
2L | 16262521..16262593 | 215..287 | 100 | -> | Plus |
2L | 16262650..16263180 | 288..818 | 100 | -> | Plus |
2L | 16263262..16263386 | 819..943 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:49 Download gff for
BS14316.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16262200..16262278 | 17..95 | 100 | -> | Plus |
arm_2L | 16262339..16262457 | 96..214 | 100 | -> | Plus |
arm_2L | 16262521..16262593 | 215..287 | 100 | -> | Plus |
arm_2L | 16262650..16263180 | 288..818 | 100 | -> | Plus |
arm_2L | 16263262..16263386 | 819..943 | 100 | | Plus |
BS14316.3prime Sequence
689 bp (618 high quality bases) assembled on 2006-10-13
> BS14316.3prime
ATGGTCTAGAAAGCTTCTATAATTGCTCCTCTTCGATTTGCAAATCTGTC
GAGAAGACATACATGTCCCGTCGTCTGGCGAAAAGCATTTCCTGTCGCTT
GGGATGAGTGGCTAAGGAGTGGACGACGCCGCCATTATCACTTATGCGAA
TGCGCTGCAGTACTTTCCCATCGAGCAGGTCGTAAACAAAGGCGTCTCCA
TCACTGGAGCCCGTGACTATTTGGGCATCGTTTGACAGTATTCCGCACTC
GATGTGGTAGTCATCGCCGCGATGTCCCCTGTACTCGGAGAGTAATCCGC
CGGTCTCACAGTCCAGCAGACGAACCACACTATCCTGACAGCCGGCCACC
AGACATTGCTCGTCGCGCGTCTGCGCCAGATATGTGATGGGTTCACCAAT
TTTGTCGCAGGTAAGTTCGCCCACCCGAATATCGTAGGTCCTCACACATC
CGTCCAAGGAGGCGGCGTAGATGCGATTCTCGTTGGTTGCCACCGTGGTG
ATGCAGTCCCGGGCCTCCTTCATCACCTGAACGGGATCCAGGCGACGCGT
TCGAATGTCCCAGCACATTACGGCATTATCTCGACCCCCGGAAATGGCTA
TCGAGGAGTCCTCGTTGAAGCAGACGCATCTAACACCTCCGGCATGGCTA
CGCAGGCGCCGTACTGGTGCTCCCGTTGACACGTCCAGT
BS14316.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-PA | 927 | CG4935-RA | 258..927 | 686..17 | 3350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-RA | 1083 | CG4935-RA | 317..986 | 686..17 | 3350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:29:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16262649..16263182 | 673..140 | 2670 | 100 | Minus |
2L | 23513712 | 2L | 16263262..16263386 | 141..17 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:29:34 has no hits.
BS14316.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:10 Download gff for
BS14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-PA | 254..927 | 17..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:09:21 Download gff for
BS14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 313..986 | 17..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:13:41 Download gff for
BS14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 313..986 | 17..689 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:13:41 Download gff for
BS14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16262576..16262593 | 673..689 | 94 | -> | Minus |
2L | 16262650..16263180 | 142..672 | 100 | -> | Minus |
2L | 16263262..16263386 | 17..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:09:21 Download gff for
BS14316.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16262576..16262593 | 673..689 | 94 | -> | Minus |
arm_2L | 16262650..16263180 | 142..672 | 100 | -> | Minus |
arm_2L | 16263262..16263386 | 17..141 | 100 | | Minus |
BS14316.5prime Sequence
683 bp (563 high quality bases) assembled on 2006-10-13
> BS14316.5prime
GAAGTTATCAGTCGACATGCCGGAATTTGAGAACTTTAACGTAAAAACCA
CAATTGACTGCAAACAAGGTGCAGTGCGAGCTGTGCGCTATAATGTTGAT
GGCACTTATTGCTTGAGTTGTGGATCTGACAAGAAGATAAAGCTGTGGAA
TCCGGCATCGGGATTACTGCTTAAGACTTATGGTGGTCATGCGGATGAAG
TCACCGATGCGGCGGGAAGCTGTGATAGTAGCTATATCGTTTCCGCCAGC
TTGGATAAAAGCATTATCTACTGGGACGTGTCAACGGGAGCACCAGTACG
GCGCCTGCGTAGCCATGCCGGAGGTGTTAGATGCGTCTGCTTCAACGAGG
ACTCCTCGATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGG
GACATTCGAACGCGTCGCCTGGATCCCGTTCAGGTGATGAAGGAGGCCCG
GGACTGCATCACCACGGTGGCAACCAACGAGAATCGCATCTACGCCGCCT
CCTTGGACGGATGTGTGAGGACCTACGATATTCGGGTGGGCGAACTTACC
TGCGACAAAATTGGTGAACCCATCACATATCTGGCGCAGACGCGCGACGA
GCAATGTCTGGTGGCCGGCTGTCAAGATAGTGTGGTTCGTCTGCTGTACT
GTGAGACCGGCGGATTACTCTCCGAGTACAGGG
BS14316.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-PA | 927 | CG4935-RA | 1..667 | 17..683 | 3285 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-RA | 1083 | CG4935-RA | 60..726 | 17..683 | 3305 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:20:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16262649..16263045 | 287..683 | 1955 | 99.5 | Plus |
2L | 23513712 | 2L | 16262338..16262458 | 95..215 | 605 | 100 | Plus |
2L | 23513712 | 2L | 16262200..16262282 | 17..99 | 400 | 98.8 | Plus |
2L | 23513712 | 2L | 16262520..16262594 | 214..288 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:20:54 has no hits.
BS14316.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:12 Download gff for
BS14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-PA | 1..667 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:10:58 Download gff for
BS14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 60..726 | 17..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:25 Download gff for
BS14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4935-RA | 60..726 | 17..683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:25 Download gff for
BS14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16262339..16262457 | 96..214 | 100 | -> | Plus |
2L | 16262521..16262593 | 215..287 | 100 | -> | Plus |
2L | 16262200..16262278 | 17..95 | 100 | -> | Plus |
2L | 16262650..16263045 | 288..683 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:10:58 Download gff for
BS14316.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16262200..16262278 | 17..95 | 100 | -> | Plus |
arm_2L | 16262339..16262457 | 96..214 | 100 | -> | Plus |
arm_2L | 16262521..16262593 | 215..287 | 100 | -> | Plus |
arm_2L | 16262650..16263045 | 288..683 | 99 | | Plus |
BS14316.pep Sequence
Translation from 16 to 942
> BS14316.pep
MPEFENFNVKTTIDCKQGAVRAVRYNVDGTYCLSCGSDKKIKLWNPASGL
LLKTYGGHADEVTDAAGSCDSSYIVSASLDKSIIYWDVSTGAPVRRLRSH
AGGVRCVCFNEDSSIAISGGRDNAVMCWDIRTRRLDPVQVMKEARDCITT
VATNENRIYAASLDGCVRTYDIRVGELTCDKIGEPITYLAQTRDEQCLVA
GCQDSVVRLLDCETGGLLSEYRGHRGDDYHIECGILSNDAQIVTGSSDGD
AFVYDLLDGKVLQRIRISDNGGVVHSLATHPKRQEMLFARRRDMYVFSTD
LQIEEEQL*
BS14316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4935-PA | 308 | CG4935-PA | 1..308 | 1..308 | 1627 | 100 | Plus |
wds-PB | 361 | CG17437-PB | 61..338 | 6..281 | 338 | 29.4 | Plus |
wds-PA | 361 | CG17437-PA | 61..338 | 6..281 | 338 | 29.4 | Plus |
CG10931-PA | 345 | CG10931-PA | 46..321 | 7..281 | 237 | 24.9 | Plus |
ago-PA | 1326 | CG15010-PA | 1043..1281 | 27..272 | 235 | 26.2 | Plus |