Clone BS14316 Report

Search the DGRC for BS14316

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG4935-RA
Protein status:BS14316.pep: full length peptide match
Sequenced Size:959

Clone Sequence Records

BS14316.complete Sequence

959 bp assembled on 2010-02-09

GenBank Submission: KX805269

> BS14316.complete
GAAGTTATCAGTCGACATGCCGGAATTTGAGAACTTTAACGTAAAAACCA
CAATTGACTGCAAACAAGGTGCAGTGCGAGCTGTGCGCTATAATGTTGAT
GGCACTTATTGCTTGAGTTGTGGATCTGACAAGAAGATAAAGCTGTGGAA
TCCGGCATCGGGATTACTGCTTAAGACTTATGGTGGTCATGCGGATGAAG
TCACCGATGCGGCGGGAAGCTGTGATAGTAGCTATATCGTTTCCGCCAGC
TTGGATAAAAGCATTATCTACTGGGACGTGTCAACGGGAGCACCAGTACG
GCGCCTGCGTAGCCATGCCGGAGGTGTTAGATGCGTCTGCTTCAACGAGG
ACTCCTCGATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGG
GACATTCGAACGCGTCGCCTGGATCCCGTTCAGGTGATGAAGGAGGCCCG
GGACTGCATCACCACGGTGGCAACCAACGAGAATCGCATCTACGCCGCCT
CCTTGGACGGATGTGTGAGGACCTACGATATTCGGGTGGGCGAACTTACC
TGCGACAAAATTGGTGAACCCATCACATATCTGGCGCAGACGCGCGACGA
GCAATGTCTGGTGGCCGGCTGTCAGGATAGTGTGGTTCGTCTGCTGGACT
GTGAGACCGGCGGATTACTCTCCGAGTACAGGGGACATCGCGGCGATGAC
TACCACATCGAGTGCGGAATACTGTCAAACGATGCCCAAATAGTCACGGG
CTCCAGTGATGGAGACGCCTTTGTTTACGACCTGCTCGATGGGAAAGTAC
TGCAGCGCATTCGCATAAGTGATAATGGCGGCGTCGTCCACTCCTTAGCC
ACTCATCCCAAGCGACAGGAAATGCTTTTCGCCAGACGACGGGACATGTA
TGTCTTCTCGACAGATTTGCAAATCGAAGAGGAGCAATTATAGAAGCTTT
CTAGACCAT

BS14316.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-RA 927 CG4935-PA 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:24:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-RA 1083 CG4935-RA 60..986 17..943 4635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16262649..16263182 287..820 2670 100 Plus
2L 23513712 2L 16263262..16263386 819..943 625 100 Plus
2L 23513712 2L 16262338..16262458 95..215 605 100 Plus
2L 23513712 2L 16262200..16262282 17..99 400 98.8 Plus
2L 23513712 2L 16262520..16262594 214..288 375 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:24:48 has no hits.

BS14316.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:17 Download gff for BS14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 1..927 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:06 Download gff for BS14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 78..1004 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:49 Download gff for BS14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 60..986 17..943 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:34:26 Download gff for BS14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 78..1004 17..943 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:10 Download gff for BS14316.complete
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 60..986 17..943 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:10 Download gff for BS14316.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16262200..16262278 17..95 100 -> Plus
2L 16262339..16262457 96..214 100 -> Plus
2L 16262521..16262593 215..287 100 -> Plus
2L 16262650..16263180 288..818 100 -> Plus
2L 16263262..16263386 819..943 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:49 Download gff for BS14316.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16262200..16262278 17..95 100 -> Plus
arm_2L 16262339..16262457 96..214 100 -> Plus
arm_2L 16262521..16262593 215..287 100 -> Plus
arm_2L 16262650..16263180 288..818 100 -> Plus
arm_2L 16263262..16263386 819..943 100   Plus

BS14316.3prime Sequence

689 bp (618 high quality bases) assembled on 2006-10-13

> BS14316.3prime
ATGGTCTAGAAAGCTTCTATAATTGCTCCTCTTCGATTTGCAAATCTGTC
GAGAAGACATACATGTCCCGTCGTCTGGCGAAAAGCATTTCCTGTCGCTT
GGGATGAGTGGCTAAGGAGTGGACGACGCCGCCATTATCACTTATGCGAA
TGCGCTGCAGTACTTTCCCATCGAGCAGGTCGTAAACAAAGGCGTCTCCA
TCACTGGAGCCCGTGACTATTTGGGCATCGTTTGACAGTATTCCGCACTC
GATGTGGTAGTCATCGCCGCGATGTCCCCTGTACTCGGAGAGTAATCCGC
CGGTCTCACAGTCCAGCAGACGAACCACACTATCCTGACAGCCGGCCACC
AGACATTGCTCGTCGCGCGTCTGCGCCAGATATGTGATGGGTTCACCAAT
TTTGTCGCAGGTAAGTTCGCCCACCCGAATATCGTAGGTCCTCACACATC
CGTCCAAGGAGGCGGCGTAGATGCGATTCTCGTTGGTTGCCACCGTGGTG
ATGCAGTCCCGGGCCTCCTTCATCACCTGAACGGGATCCAGGCGACGCGT
TCGAATGTCCCAGCACATTACGGCATTATCTCGACCCCCGGAAATGGCTA
TCGAGGAGTCCTCGTTGAAGCAGACGCATCTAACACCTCCGGCATGGCTA
CGCAGGCGCCGTACTGGTGCTCCCGTTGACACGTCCAGT

BS14316.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-PA 927 CG4935-RA 258..927 686..17 3350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-RA 1083 CG4935-RA 317..986 686..17 3350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16262649..16263182 673..140 2670 100 Minus
2L 23513712 2L 16263262..16263386 141..17 625 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:29:34 has no hits.

BS14316.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:10 Download gff for BS14316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-PA 254..927 17..689 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:09:21 Download gff for BS14316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 313..986 17..689 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:13:41 Download gff for BS14316.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 313..986 17..689 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:13:41 Download gff for BS14316.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16262576..16262593 673..689 94 -> Minus
2L 16262650..16263180 142..672 100 -> Minus
2L 16263262..16263386 17..141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:09:21 Download gff for BS14316.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16262576..16262593 673..689 94 -> Minus
arm_2L 16262650..16263180 142..672 100 -> Minus
arm_2L 16263262..16263386 17..141 100   Minus

BS14316.5prime Sequence

683 bp (563 high quality bases) assembled on 2006-10-13

> BS14316.5prime
GAAGTTATCAGTCGACATGCCGGAATTTGAGAACTTTAACGTAAAAACCA
CAATTGACTGCAAACAAGGTGCAGTGCGAGCTGTGCGCTATAATGTTGAT
GGCACTTATTGCTTGAGTTGTGGATCTGACAAGAAGATAAAGCTGTGGAA
TCCGGCATCGGGATTACTGCTTAAGACTTATGGTGGTCATGCGGATGAAG
TCACCGATGCGGCGGGAAGCTGTGATAGTAGCTATATCGTTTCCGCCAGC
TTGGATAAAAGCATTATCTACTGGGACGTGTCAACGGGAGCACCAGTACG
GCGCCTGCGTAGCCATGCCGGAGGTGTTAGATGCGTCTGCTTCAACGAGG
ACTCCTCGATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGG
GACATTCGAACGCGTCGCCTGGATCCCGTTCAGGTGATGAAGGAGGCCCG
GGACTGCATCACCACGGTGGCAACCAACGAGAATCGCATCTACGCCGCCT
CCTTGGACGGATGTGTGAGGACCTACGATATTCGGGTGGGCGAACTTACC
TGCGACAAAATTGGTGAACCCATCACATATCTGGCGCAGACGCGCGACGA
GCAATGTCTGGTGGCCGGCTGTCAAGATAGTGTGGTTCGTCTGCTGTACT
GTGAGACCGGCGGATTACTCTCCGAGTACAGGG

BS14316.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-PA 927 CG4935-RA 1..667 17..683 3285 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-RA 1083 CG4935-RA 60..726 17..683 3305 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16262649..16263045 287..683 1955 99.5 Plus
2L 23513712 2L 16262338..16262458 95..215 605 100 Plus
2L 23513712 2L 16262200..16262282 17..99 400 98.8 Plus
2L 23513712 2L 16262520..16262594 214..288 375 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:20:54 has no hits.

BS14316.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:12 Download gff for BS14316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-PA 1..667 17..683 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:10:58 Download gff for BS14316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 60..726 17..683 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:25 Download gff for BS14316.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4935-RA 60..726 17..683 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:25 Download gff for BS14316.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16262339..16262457 96..214 100 -> Plus
2L 16262521..16262593 215..287 100 -> Plus
2L 16262200..16262278 17..95 100 -> Plus
2L 16262650..16263045 288..683 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:10:58 Download gff for BS14316.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16262200..16262278 17..95 100 -> Plus
arm_2L 16262339..16262457 96..214 100 -> Plus
arm_2L 16262521..16262593 215..287 100 -> Plus
arm_2L 16262650..16263045 288..683 99   Plus

BS14316.pep Sequence

Translation from 16 to 942

> BS14316.pep
MPEFENFNVKTTIDCKQGAVRAVRYNVDGTYCLSCGSDKKIKLWNPASGL
LLKTYGGHADEVTDAAGSCDSSYIVSASLDKSIIYWDVSTGAPVRRLRSH
AGGVRCVCFNEDSSIAISGGRDNAVMCWDIRTRRLDPVQVMKEARDCITT
VATNENRIYAASLDGCVRTYDIRVGELTCDKIGEPITYLAQTRDEQCLVA
GCQDSVVRLLDCETGGLLSEYRGHRGDDYHIECGILSNDAQIVTGSSDGD
AFVYDLLDGKVLQRIRISDNGGVVHSLATHPKRQEMLFARRRDMYVFSTD
LQIEEEQL*

BS14316.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 04:57:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4935-PA 308 CG4935-PA 1..308 1..308 1627 100 Plus
wds-PB 361 CG17437-PB 61..338 6..281 338 29.4 Plus
wds-PA 361 CG17437-PA 61..338 6..281 338 29.4 Plus
CG10931-PA 345 CG10931-PA 46..321 7..281 237 24.9 Plus
ago-PA 1326 CG15010-PA 1043..1281 27..272 235 26.2 Plus