Clone Sequence Records
BS14328.3prime Sequence
615 bp (475 high quality bases) assembled on 2006-10-13
> BS14328.3prime
ATGGTCTAGAAAGCTTCTACTTCTTGGCGGCGAGCAGCTCGTCCAGGTGC
GCCTCCACCTCCTTATGTGCCTTGACGCTATGTTCGGTGCGAGAGGCGGC
CTCGTGGACGAAAAATCCGCGCAGTAGTTCTGCTTTTGTTTGAACAAGTT
GCGCCTGCGCCTGTTGCAATTTTAGTTCGTTTGCCAACTGCGGCCCCAAT
TTCAATTCGGCGGTCTCCTTGAGAAGCGTGCACTTACGAGTGAGAAGCGC
AACCAATTTCTCCAGACCGCTGCGATGCTCCTCCTCCAGGCGCAGAATCT
CCTTTTGGTCGCAGCTTAAGTCCGCCTCCTGGCCAAAGGCGTCCGGGAAC
TCCTCGCGTATCCTGTCGCACAATTCGGCAATGGGTTGCAGAGTTGTGCG
TAATTGAGCGGACAATTTGGTACGCATCGTCTTGCGATCCGTGTAATTCA
AGGGCGGAAAACTGCTGCCGCTCGGTAGACCAAGCACCTGCTCCTGACCA
GCTCCCTCCATCTCGCCGAGTCGCGCATAACTTCCAATGGAAACCAATTT
GAGGGCTCTTTTGAATTCATCACTCGGATTTGGGCCCACATCCAGGCGGT
CTTAGCTCGTCCAGC
BS14328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16969-PA | 696 | CG16969-RA | 115..696 | 598..17 | 2860 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-RB | 987 | CG16969-RB | 187..785 | 615..16 | 2945 | 99.5 | Minus |
| dgt2-RA | 842 | CG16969-RA | 187..785 | 615..16 | 2945 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11990312..11990777 | 481..16 | 2315 | 99.8 | Minus |
| 2L | 23513712 | 2L | 11990122..11990257 | 615..479 | 620 | 98.5 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:31:24 has no hits.
BS14328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:20 Download gff for
BS14328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16969-PA | 99..696 | 17..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:29 Download gff for
BS14328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 187..788 | 10..615 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:10 Download gff for
BS14328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 187..788 | 10..615 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:10 Download gff for
BS14328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11990122..11990255 | 481..615 | 98 | -> | Minus |
| 2L | 11990313..11990780 | 10..480 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:29 Download gff for
BS14328.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11990122..11990255 | 481..615 | 98 | -> | Minus |
| arm_2L | 11990313..11990780 | 10..480 | 99 | | Minus |
BS14328.5prime Sequence
536 bp (467 high quality bases) assembled on 2006-10-13
> BS14328.5prime
GAAGTTATCAGTCGACATGGATGATCCATCCGCCACGCTCTTGCCCGAAC
ACTCGGAAGATTTGCGGCTGGCTCGCGATGCGGAGCTGAAGAAGGTGCTC
AAGCTGAAGCTAGTGCTGGACGAGCTAAGACGCCTGGATGTGGGCCCAAA
TCCGAGTGATGAAATCAAAAGAGCCCTCAAATTGGTTTCCATTGGAAGTT
ATGCGCGACTCGGCGAGATGGAGGGAGCTGGTCAGGAGCAGGTGCTTGGT
CTACCGAGCGGCAGCAGTTTTCCGCCCTTGAATTACACGGATCGCAAGAC
GGTGCGTACCAAATTGTCCGCTCAATTACGCACAACTCTGCAACCCATTG
CCGAATTGTGCGACAGGATACGCGAGGAGTTCCCGGACGCCTTTGGCCAG
GAGGCGGACTTAAGCTGCGACCAAAAGGAGATTCTGCGCCTGGAGGAGGA
GCATCGCAGCGGTCTGGAGAATTTGGTTGCGCTTCTCACTCGTAAGTGCA
CGCTTCTCAAGGAGACCGCCGAATTGAAATTGGGGC
BS14328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16969-PA | 696 | CG16969-RA | 1..520 | 17..536 | 2575 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:51:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-RB | 987 | CG16969-RB | 89..608 | 17..536 | 2585 | 99.8 | Plus |
| dgt2-RA | 842 | CG16969-RA | 89..608 | 17..536 | 2585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:51:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11990312..11990600 | 248..536 | 1430 | 99.7 | Plus |
| 2L | 23513712 | 2L | 11990024..11990257 | 17..250 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:51:48 has no hits.
BS14328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:20 Download gff for
BS14328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16969-PA | 1..520 | 17..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:20 Download gff for
BS14328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 82..608 | 9..536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:29 Download gff for
BS14328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 82..608 | 9..536 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:29 Download gff for
BS14328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11990017..11990255 | 9..248 | 98 | -> | Plus |
| 2L | 11990313..11990600 | 249..536 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:20 Download gff for
BS14328.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11990017..11990255 | 9..248 | 98 | -> | Plus |
| arm_2L | 11990313..11990600 | 249..536 | 99 | | Plus |
BS14328.complete Sequence
728 bp assembled on 2006-11-01
GenBank Submission: FJ637634
> BS14328.complete
GAAGTTATCAGTCGACATGGATGATCCATCCGCCACGCTCTTGCCCGAAC
ACTCGGAAGATTTGCGGCTGGCTCGCGATGCGGAGCTGAAGAAGGTGCTC
AAGCTGAAGCTAGTGCTGGACGAGCTAAGACGCCTGGATGTGGGCCCAAA
TCCGAGTGATGAAATCAAAAGAGCCCTCAAATTGGTTTCCATTGGAAGTT
ATGCGCGACTCGGCGAGATGGAGGGAGCTGGTCAGGAGCAGGTGCTTGGT
CTACCGAGCGGCAGCAGTTTTCCGCCCTTGAATTACACGGATCGCAAGAC
GGTGCGTACCAAATTGTCCGCTCAATTACGCACAACTCTGCAACCCATTG
CCGAATTGTGCGACAGGATACGCGAGGAGTTCCCGGACGCCTTTGGCCAG
GAGGCGGACTTAAGCTGCGACCAAAAGGAGATTCTGCGCCTGGAGGAGGA
GCATCGCAGCGGTCTGGAGAAATTGGTTGCGCTTCTCACTCGTAAGTGCA
CGCTTCTCAAGGAGACCGCCGAATTGAAATTGGGGCCGCAGTTGGCAAAC
GAACTAAAATTGCAACAGGCGCAGGCGCAACTTGTTCAAACAAAAGCAGA
ACTACTGCGCGGATTTTTCGTCCACGAGGCCGCCTCTCGCACCGAACATA
GCGTCAAGGCACATAAGGAGGTGGAGGCGCACCTGGACGAGCTGCTCGCC
GCCAAGAAGTAGAAGCTTTCTAGACCAT
BS14328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-RB | 696 | CG16969-PB | 1..696 | 17..712 | 3480 | 100 | Plus |
| dgt2-RA | 696 | CG16969-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-RB | 987 | CG16969-RB | 89..785 | 17..713 | 3485 | 100 | Plus |
| dgt2-RA | 842 | CG16969-RA | 89..785 | 17..713 | 3485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11990312..11990777 | 248..713 | 2330 | 100 | Plus |
| 2L | 23513712 | 2L | 11990024..11990257 | 17..250 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:25:09 has no hits.
BS14328.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:37 Download gff for
BS14328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:59 Download gff for
BS14328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 54..760 | 9..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:30 Download gff for
BS14328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 89..784 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:37 Download gff for
BS14328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 54..760 | 9..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:02 Download gff for
BS14328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 89..784 | 17..712 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:02 Download gff for
BS14328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11990024..11990255 | 17..248 | 100 | -> | Plus |
| 2L | 11990313..11990776 | 249..712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:30 Download gff for
BS14328.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11990024..11990255 | 17..248 | 100 | -> | Plus |
| arm_2L | 11990313..11990776 | 249..712 | 100 | | Plus |
BS14328.pep Sequence
Translation from 16 to 711
> BS14328.pep
MDDPSATLLPEHSEDLRLARDAELKKVLKLKLVLDELRRLDVGPNPSDEI
KRALKLVSIGSYARLGEMEGAGQEQVLGLPSGSSFPPLNYTDRKTVRTKL
SAQLRTTLQPIAELCDRIREEFPDAFGQEADLSCDQKEILRLEEEHRSGL
EKLVALLTRKCTLLKETAELKLGPQLANELKLQQAQAQLVQTKAELLRGF
FVHEAASRTEHSVKAHKEVEAHLDELLAAKK*
BS14328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-PB | 231 | CG16969-PB | 1..231 | 1..231 | 1149 | 100 | Plus |
| dgt2-PA | 231 | CG16969-PA | 1..231 | 1..231 | 1149 | 100 | Plus |
