Clone BS14330 Report

Search the DGRC for BS14330

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptRcd-1r-RA
Protein status:BS14330.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14330.3prime Sequence

488 bp (461 high quality bases) assembled on 2006-10-13

> BS14330.3prime
ATGGTCTAGAAAGCTTCTAGGAGGAGCCCATTGGGTTGACGGCGTTTGTC
TGCAGGTTCTTGAGCAGCATCTGCAGCCACTGCTTGGTGCACGTGTCATG
TTGGACGAGCGACGTGAAGGTGCCGTCACGCAGCAGATCGGGCAGACACA
CTCTAAGTGCACTGCGAGCGCGCGCATTTTCCGTAAGTAGTAGATAGCAG
CGCACCACATGCTTCAGCACCCGGAGGCATGGAAACTTCAACATATGGAT
GACCATTTTGCCCAGGGTGATGGCCACCTGCGAGAAGCGATCGTGGTTCT
CGCAAATGTACGTCAGACCCATCTCATCGAGCAGTATCTTCTCAAGGATT
GAAGTGGCCGCGATCTTGGTCAGCTTCGATCCCCTGACCATATTGGTCAG
ACAGTGAGGCACGACCTCGCTCCATATCAGGAAGATGAGGACCTCCGTAT
CACCGGTCTCGGCCAGAGCATTAATCACGCCCAGCGTG

BS14330.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9573-PA 873 CG9573-RA 402..873 488..17 2310 99.5 Minus
CG14213-PB 915 CG14213-RB 575..671 342..246 210 88.6 Minus
CG14213-PA 915 CG14213-RA 575..671 342..246 210 88.6 Minus
CG14213-PB 915 CG14213-RB 829..864 88..53 180 100 Minus
CG14213-PA 915 CG14213-RA 829..864 88..53 180 100 Minus
CG14213-PB 915 CG14213-RB 768..800 149..117 140 96.9 Minus
CG14213-PA 915 CG14213-RA 768..800 149..117 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1r-RA 1184 CG9573-RA 548..1020 488..16 2335 99.6 Minus
CG13102-RB 1835 CG13102-RB 735..1207 16..488 2335 99.6 Plus
Rcd-1-RC 1725 CG14213-RC 968..1398 483..53 850 80.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9013049..9013521 16..488 2335 99.6 Plus
X 23542271 X 19639934..19640091 419..262 340 81 Minus
X 23542271 X 19640301..19640419 171..53 280 82.4 Minus
X 23542271 X 19640147..19640234 263..176 215 83 Minus
Blast to na_te.dros performed on 2015-01-31 10:04:41 has no hits.

BS14330.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:21 Download gff for BS14330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9573-PA 402..873 17..488 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:30 Download gff for BS14330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 735..1207 16..488 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:12 Download gff for BS14330.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 735..1207 16..488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:12 Download gff for BS14330.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9013049..9013521 16..488 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:30 Download gff for BS14330.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9013049..9013521 16..488 99   Plus

BS14330.5prime Sequence

518 bp (459 high quality bases) assembled on 2006-10-13

> BS14330.5prime
GAAGTTATCAGTCGACATGAGTGCGGAACCAAGTCCGGTAATGAGTCCCC
AGCAGCAGGCCGAGCGGGAGAAGGTGTACCAGTTGATCATCGAGCTGGCC
TATCCTGCCACGCGGGAGACCGCTCTGCTGGAGCTGAGCAAGAACACCTA
TGCGGACCTGGCCCCCATGCTGTGGAAAAGCGTCGGTACCACCTGCACCC
TGCTGCAGGAGATCGTCAACATATACCCCATAATAACGACGCCCGTTTTG
AAGGCCAACCAGTCGAACCGCGTGTGCTACGCCCTGACTTTGCTACAGTG
CGTCGCCTCGCATCCGGAGACTCGCCCGGCCTTCCTGCGGGACCAGATAC
CGATGTACTTGTACCCCTTCTTGTCGACCACGTTCAAGAGCAGGCCCTTC
GAGCAGCTGCGCCTGACCACGCTGGGCGTGATTAATGCTCTGGCCGAGAC
CGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTGCCTC
ACTGTCTGACCAATATGG

BS14330.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9573-PA 873 CG9573-RA 1..502 17..518 2510 100 Plus
CG14213-PB 915 CG14213-RB 307..414 296..403 340 92.5 Plus
CG14213-PA 915 CG14213-RA 307..414 296..403 340 92.5 Plus
CG14213-PB 915 CG14213-RB 61..155 50..144 175 87.3 Plus
CG14213-PA 915 CG14213-RA 61..155 50..144 175 87.3 Plus
CG14213-PB 915 CG14213-RB 164..224 153..213 155 90.1 Plus
CG14213-PA 915 CG14213-RA 164..224 153..213 155 90.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1r-RA 1184 CG9573-RA 147..648 17..518 2510 100 Plus
CG13102-RB 1835 CG13102-RB 1107..1608 518..17 2510 100 Minus
Rcd-1-RA 1612 CG14213-RA 482..884 50..452 1115 85.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9013421..9013922 518..17 2510 100 Minus
X 23542271 X 19639444..19639815 72..443 1020 84.9 Plus
Blast to na_te.dros performed on 2015-02-10 16:31:11 has no hits.

BS14330.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:21 Download gff for BS14330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9573-PA 1..502 17..518 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:24 Download gff for BS14330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 1107..1610 13..518 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:34 Download gff for BS14330.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 1107..1610 13..518 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:34 Download gff for BS14330.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9013421..9013924 13..518 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:24 Download gff for BS14330.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9013421..9013924 13..518 99   Minus

BS14330.complete Sequence

905 bp assembled on 2006-11-01

GenBank Submission: FJ637635

> BS14330.complete
GAAGTTATCAGTCGACATGAGTGCGGAACCAAGTCCGGTAATGAGTCCCC
AGCAGCAGGCCGAGCGGGAGAAGGTGTACCAGTTGATCATCGAGCTGGCC
TATCCTGCCACGCGGGAGACCGCTCTGCTGGAGCTGAGCAAGAACACCTA
TGCGGACCTGGCCCCCATGCTGTGGAAAAGCGTCGGTACCACCTGCACCC
TGCTGCAGGAGATCGTCAACATATACCCCATAATAACGACGCCCGTTTTG
AAGGCCAACCAGTCGAACCGCGTGTGCTACGCCCTGACTTTGCTACAGTG
CGTCGCCTCGCATCCGGAGACTCGCCCGGCCTTCCTGCGGGACCAGATAC
CGATGTACTTGTACCCCTTCTTGTCGACCACGTTCAAGAGCAGGCCCTTC
GAGCAGCTGCGCCTGACCACGCTGGGCGTGATTAATGCTCTGGCCGAGAC
CGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTGCCTC
ACTGTCTGACCAATATGGTCAGGGGATCGAAGCTGACCAAGATCGCGGCC
ACTTCAATCCTTGAGAAGATACTGCTCGATGAGATGGGTCTGACGTACAT
TTGCGAGAACCACGATCGCTTCTCGCAGGTGGCCATCACCCTGGGCAAAA
TGGTCATCCATATGTTGAAGTTTCCATGCCTCCGGGTGCTGAAGCATGTG
GTGCGCTGCTATCTACTACTTACGGAAAATGCGCGCGCTCGCAGTGCACT
TAGAGTGTGTCTGCCCGATCTGCTGCGTGACGGCACCTTCACGTCGCTCG
TCCAACATGACACGTGCACCAAGCAGTGGCTGCAGATGCTGCTCAAGAAC
CTGCAGACAAACGCCGTCAACCCAATGGGCTCCTCCTAGAAGCTTTCTAG
ACCAT

BS14330.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1r-RA 873 CG9573-PA 1..873 17..889 4335 99.8 Plus
Rcd-1-RA 915 CG14213-PA 61..864 50..853 1875 82.2 Plus
Rcd-1-RB 915 CG14213-PB 61..864 50..853 1875 82.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1r-RA 1184 CG9573-RA 147..1020 17..890 4340 99.8 Plus
CG13102-RB 1835 CG13102-RB 735..1608 890..17 4340 99.8 Minus
Rcd-1-RA 1612 CG14213-RA 482..1285 50..853 1875 82.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9013049..9013922 890..17 4340 99.8 Minus
X 23542271 X 19639444..19639815 72..443 1020 84.9 Plus
X 23542271 X 19639934..19640091 487..644 340 81 Plus
X 23542271 X 19640301..19640419 735..853 280 82.4 Plus
X 23542271 X 19640147..19640234 643..730 215 83 Plus
Blast to na_te.dros performed on 2014-11-28 00:16:49 has no hits.

BS14330.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:10 Download gff for BS14330.complete
Subject Subject Range Query Range Percent Splice Strand
CG9573-RA 1..873 17..889 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:22 Download gff for BS14330.complete
Subject Subject Range Query Range Percent Splice Strand
CG9573-RA 147..1022 13..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:03 Download gff for BS14330.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 736..1608 17..889 99   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:10 Download gff for BS14330.complete
Subject Subject Range Query Range Percent Splice Strand
CG9573-RA 147..1022 13..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:36 Download gff for BS14330.complete
Subject Subject Range Query Range Percent Splice Strand
CG13102-RB 736..1608 17..889 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:36 Download gff for BS14330.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9013050..9013922 17..889 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:03 Download gff for BS14330.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9013050..9013922 17..889 99   Minus

BS14330.pep Sequence

Translation from 16 to 888

> BS14330.pep
MSAEPSPVMSPQQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAP
MLWKSVGTTCTLLQEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHP
ETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEV
LIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHD
RFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLP
DLLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNAVNPMGSS*

BS14330.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rcd-1r-PA 290 CG9573-PA 1..290 1..290 1490 100 Plus
Rcd-1-PA 304 CG14213-PA 1..304 1..289 976 65.5 Plus
Rcd-1-PB 304 CG14213-PB 1..304 1..289 976 65.5 Plus
Rcd-1-PC 301 CG14213-PC 1..301 1..289 954 64.5 Plus
CG2053-PB 298 CG2053-PB 3..258 6..258 343 34.4 Plus