Clone Sequence Records
BS14330.3prime Sequence
488 bp (461 high quality bases) assembled on 2006-10-13
> BS14330.3prime
ATGGTCTAGAAAGCTTCTAGGAGGAGCCCATTGGGTTGACGGCGTTTGTC
TGCAGGTTCTTGAGCAGCATCTGCAGCCACTGCTTGGTGCACGTGTCATG
TTGGACGAGCGACGTGAAGGTGCCGTCACGCAGCAGATCGGGCAGACACA
CTCTAAGTGCACTGCGAGCGCGCGCATTTTCCGTAAGTAGTAGATAGCAG
CGCACCACATGCTTCAGCACCCGGAGGCATGGAAACTTCAACATATGGAT
GACCATTTTGCCCAGGGTGATGGCCACCTGCGAGAAGCGATCGTGGTTCT
CGCAAATGTACGTCAGACCCATCTCATCGAGCAGTATCTTCTCAAGGATT
GAAGTGGCCGCGATCTTGGTCAGCTTCGATCCCCTGACCATATTGGTCAG
ACAGTGAGGCACGACCTCGCTCCATATCAGGAAGATGAGGACCTCCGTAT
CACCGGTCTCGGCCAGAGCATTAATCACGCCCAGCGTG
BS14330.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9573-PA | 873 | CG9573-RA | 402..873 | 488..17 | 2310 | 99.5 | Minus |
CG14213-PB | 915 | CG14213-RB | 575..671 | 342..246 | 210 | 88.6 | Minus |
CG14213-PA | 915 | CG14213-RA | 575..671 | 342..246 | 210 | 88.6 | Minus |
CG14213-PB | 915 | CG14213-RB | 829..864 | 88..53 | 180 | 100 | Minus |
CG14213-PA | 915 | CG14213-RA | 829..864 | 88..53 | 180 | 100 | Minus |
CG14213-PB | 915 | CG14213-RB | 768..800 | 149..117 | 140 | 96.9 | Minus |
CG14213-PA | 915 | CG14213-RA | 768..800 | 149..117 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-RA | 1184 | CG9573-RA | 548..1020 | 488..16 | 2335 | 99.6 | Minus |
CG13102-RB | 1835 | CG13102-RB | 735..1207 | 16..488 | 2335 | 99.6 | Plus |
Rcd-1-RC | 1725 | CG14213-RC | 968..1398 | 483..53 | 850 | 80.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9013049..9013521 | 16..488 | 2335 | 99.6 | Plus |
X | 23542271 | X | 19639934..19640091 | 419..262 | 340 | 81 | Minus |
X | 23542271 | X | 19640301..19640419 | 171..53 | 280 | 82.4 | Minus |
X | 23542271 | X | 19640147..19640234 | 263..176 | 215 | 83 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:04:41 has no hits.
BS14330.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:21 Download gff for
BS14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-PA | 402..873 | 17..488 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:30 Download gff for
BS14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 735..1207 | 16..488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:12 Download gff for
BS14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 735..1207 | 16..488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:12 Download gff for
BS14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9013049..9013521 | 16..488 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:30 Download gff for
BS14330.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9013049..9013521 | 16..488 | 99 | | Plus |
BS14330.5prime Sequence
518 bp (459 high quality bases) assembled on 2006-10-13
> BS14330.5prime
GAAGTTATCAGTCGACATGAGTGCGGAACCAAGTCCGGTAATGAGTCCCC
AGCAGCAGGCCGAGCGGGAGAAGGTGTACCAGTTGATCATCGAGCTGGCC
TATCCTGCCACGCGGGAGACCGCTCTGCTGGAGCTGAGCAAGAACACCTA
TGCGGACCTGGCCCCCATGCTGTGGAAAAGCGTCGGTACCACCTGCACCC
TGCTGCAGGAGATCGTCAACATATACCCCATAATAACGACGCCCGTTTTG
AAGGCCAACCAGTCGAACCGCGTGTGCTACGCCCTGACTTTGCTACAGTG
CGTCGCCTCGCATCCGGAGACTCGCCCGGCCTTCCTGCGGGACCAGATAC
CGATGTACTTGTACCCCTTCTTGTCGACCACGTTCAAGAGCAGGCCCTTC
GAGCAGCTGCGCCTGACCACGCTGGGCGTGATTAATGCTCTGGCCGAGAC
CGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTGCCTC
ACTGTCTGACCAATATGG
BS14330.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9573-PA | 873 | CG9573-RA | 1..502 | 17..518 | 2510 | 100 | Plus |
CG14213-PB | 915 | CG14213-RB | 307..414 | 296..403 | 340 | 92.5 | Plus |
CG14213-PA | 915 | CG14213-RA | 307..414 | 296..403 | 340 | 92.5 | Plus |
CG14213-PB | 915 | CG14213-RB | 61..155 | 50..144 | 175 | 87.3 | Plus |
CG14213-PA | 915 | CG14213-RA | 61..155 | 50..144 | 175 | 87.3 | Plus |
CG14213-PB | 915 | CG14213-RB | 164..224 | 153..213 | 155 | 90.1 | Plus |
CG14213-PA | 915 | CG14213-RA | 164..224 | 153..213 | 155 | 90.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-RA | 1184 | CG9573-RA | 147..648 | 17..518 | 2510 | 100 | Plus |
CG13102-RB | 1835 | CG13102-RB | 1107..1608 | 518..17 | 2510 | 100 | Minus |
Rcd-1-RA | 1612 | CG14213-RA | 482..884 | 50..452 | 1115 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9013421..9013922 | 518..17 | 2510 | 100 | Minus |
X | 23542271 | X | 19639444..19639815 | 72..443 | 1020 | 84.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:31:11 has no hits.
BS14330.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:21 Download gff for
BS14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-PA | 1..502 | 17..518 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:24 Download gff for
BS14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 1107..1610 | 13..518 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:34 Download gff for
BS14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 1107..1610 | 13..518 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:34 Download gff for
BS14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9013421..9013924 | 13..518 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:24 Download gff for
BS14330.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9013421..9013924 | 13..518 | 99 | | Minus |
BS14330.complete Sequence
905 bp assembled on 2006-11-01
GenBank Submission: FJ637635
> BS14330.complete
GAAGTTATCAGTCGACATGAGTGCGGAACCAAGTCCGGTAATGAGTCCCC
AGCAGCAGGCCGAGCGGGAGAAGGTGTACCAGTTGATCATCGAGCTGGCC
TATCCTGCCACGCGGGAGACCGCTCTGCTGGAGCTGAGCAAGAACACCTA
TGCGGACCTGGCCCCCATGCTGTGGAAAAGCGTCGGTACCACCTGCACCC
TGCTGCAGGAGATCGTCAACATATACCCCATAATAACGACGCCCGTTTTG
AAGGCCAACCAGTCGAACCGCGTGTGCTACGCCCTGACTTTGCTACAGTG
CGTCGCCTCGCATCCGGAGACTCGCCCGGCCTTCCTGCGGGACCAGATAC
CGATGTACTTGTACCCCTTCTTGTCGACCACGTTCAAGAGCAGGCCCTTC
GAGCAGCTGCGCCTGACCACGCTGGGCGTGATTAATGCTCTGGCCGAGAC
CGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTGCCTC
ACTGTCTGACCAATATGGTCAGGGGATCGAAGCTGACCAAGATCGCGGCC
ACTTCAATCCTTGAGAAGATACTGCTCGATGAGATGGGTCTGACGTACAT
TTGCGAGAACCACGATCGCTTCTCGCAGGTGGCCATCACCCTGGGCAAAA
TGGTCATCCATATGTTGAAGTTTCCATGCCTCCGGGTGCTGAAGCATGTG
GTGCGCTGCTATCTACTACTTACGGAAAATGCGCGCGCTCGCAGTGCACT
TAGAGTGTGTCTGCCCGATCTGCTGCGTGACGGCACCTTCACGTCGCTCG
TCCAACATGACACGTGCACCAAGCAGTGGCTGCAGATGCTGCTCAAGAAC
CTGCAGACAAACGCCGTCAACCCAATGGGCTCCTCCTAGAAGCTTTCTAG
ACCAT
BS14330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-RA | 873 | CG9573-PA | 1..873 | 17..889 | 4335 | 99.8 | Plus |
Rcd-1-RA | 915 | CG14213-PA | 61..864 | 50..853 | 1875 | 82.2 | Plus |
Rcd-1-RB | 915 | CG14213-PB | 61..864 | 50..853 | 1875 | 82.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-RA | 1184 | CG9573-RA | 147..1020 | 17..890 | 4340 | 99.8 | Plus |
CG13102-RB | 1835 | CG13102-RB | 735..1608 | 890..17 | 4340 | 99.8 | Minus |
Rcd-1-RA | 1612 | CG14213-RA | 482..1285 | 50..853 | 1875 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9013049..9013922 | 890..17 | 4340 | 99.8 | Minus |
X | 23542271 | X | 19639444..19639815 | 72..443 | 1020 | 84.9 | Plus |
X | 23542271 | X | 19639934..19640091 | 487..644 | 340 | 81 | Plus |
X | 23542271 | X | 19640301..19640419 | 735..853 | 280 | 82.4 | Plus |
X | 23542271 | X | 19640147..19640234 | 643..730 | 215 | 83 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:49 has no hits.
BS14330.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:10 Download gff for
BS14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-RA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:22 Download gff for
BS14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-RA | 147..1022 | 13..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:03 Download gff for
BS14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 736..1608 | 17..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:10 Download gff for
BS14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9573-RA | 147..1022 | 13..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:36 Download gff for
BS14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13102-RB | 736..1608 | 17..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:36 Download gff for
BS14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9013050..9013922 | 17..889 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:03 Download gff for
BS14330.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9013050..9013922 | 17..889 | 99 | | Minus |
BS14330.pep Sequence
Translation from 16 to 888
> BS14330.pep
MSAEPSPVMSPQQQAEREKVYQLIIELAYPATRETALLELSKNTYADLAP
MLWKSVGTTCTLLQEIVNIYPIITTPVLKANQSNRVCYALTLLQCVASHP
ETRPAFLRDQIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEV
LIFLIWSEVVPHCLTNMVRGSKLTKIAATSILEKILLDEMGLTYICENHD
RFSQVAITLGKMVIHMLKFPCLRVLKHVVRCYLLLTENARARSALRVCLP
DLLRDGTFTSLVQHDTCTKQWLQMLLKNLQTNAVNPMGSS*
BS14330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rcd-1r-PA | 290 | CG9573-PA | 1..290 | 1..290 | 1490 | 100 | Plus |
Rcd-1-PA | 304 | CG14213-PA | 1..304 | 1..289 | 976 | 65.5 | Plus |
Rcd-1-PB | 304 | CG14213-PB | 1..304 | 1..289 | 976 | 65.5 | Plus |
Rcd-1-PC | 301 | CG14213-PC | 1..301 | 1..289 | 954 | 64.5 | Plus |
CG2053-PB | 298 | CG2053-PB | 3..258 | 6..258 | 343 | 34.4 | Plus |