Clone BS14332 Report

Search the DGRC for BS14332

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG13088-RA
Protein status:BS14332.pep: full length peptide match
Sequenced Size:1238

Clone Sequence Records

BS14332.3prime Sequence

587 bp (537 high quality bases) assembled on 2006-10-13

> BS14332.3prime
ATGGTCTAGAAAGCTTCTACGAGTCTGGACTGAATTCGATTTCCACAAAT
CGCGGACTCCAAATATTCAAATGGATCGGCTCAAAGGAGATTTTCAAGGA
GGCACTATCAAAATCCCGTAGAACTTTACTAGGATCCAATCCAGTGTTGT
GGAGATGCAGGGTCAGTGGAATCCTGCGACTTAGCAGAACTTTTGTCAGG
CAGGAGCTTCGGAGGTCCACCAGCTTGGTAGACGATAGGTTAAGAATCCT
AAGAAGATGGCAGTGACCTATAGAGTTCCACAGGTGGCTGGGAGACGGAA
CTTCTCGCATCGCCAAAAGGTGTAGCTCCTCCAAGTTTGGCAATTTGTGG
CAGATGGTGTGCAGCTGCTGCGCATCGATGTCATCCTCCTGCAGGACCAG
CCGACGAAGATTGGTCATGTGCAGTATACTTCCCGCCACCCGTTCACTGC
TCCAGAAAGAGTCGTTGAAGAGAAGCGATTGAACCTTCAGCGGCTTGTGC
CTGGCCACCGAACCTAGCAAATACTCATAGTAGTCTCGCGTGGTAAAGGC
CAAGCGGCGGAAGTGCGGCAGATTCCTCAATCGGGGC

BS14332.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-PA 1206 CG13088-RA 636..1206 587..17 2755 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-RA 1454 CG13088-RA 686..1256 587..17 2795 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8489723..8490187 587..123 2265 99.1 Minus
2L 23513712 2L 8490241..8490348 124..17 540 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:21:54 has no hits.

BS14332.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:22 Download gff for BS14332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13088-PA 636..1206 17..587 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:11:02 Download gff for BS14332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 686..1267 5..587 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:11:43 Download gff for BS14332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 686..1267 5..587 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:11:43 Download gff for BS14332.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8489723..8490185 125..587 99 -> Minus
2L 8490241..8490359 5..124 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:11:02 Download gff for BS14332.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8489723..8490185 125..587 99 -> Minus
arm_2L 8490241..8490359 5..124 95   Minus

BS14332.5prime Sequence

565 bp (564 high quality bases) assembled on 2006-10-13

> BS14332.5prime
GAAGTTATCAGTCGACATGGAGCAAATAAATGAAGATGTTTGGATAGATA
TACTAAAGTACCTACCAATGAGGGATCAGTTGTCGCTGGTCGAAGTCAAC
GAGAATATATCGGCATACGTGAAGTATCATTGGAGTCATCTCAAAACAGT
GACTCTGACCCGCGAGGATCTGGATTTTCTGGATCGGAATAACAAGCTGA
TGCACGAATGTCTGGGTGGCTGGTCGGCAACGGTGGAGCGTTTGAATTTG
CAAAGTGCCAGCAGTGATCTGCTGAGAAAGTGGACGGAATACGACTTTCC
CCACCTCCGATCGCTCGACTGCCACATGGACTACAATCTCGAGGAGGCGG
ACGAGGAAACCCTTCTGCTAACCGAGCTGTTCCCGCTCTTGACACGGCTG
TCACTCAATAGCAGCACAACAGGTCGTTACTTGTGGCACTGGAAGCAACT
AAGGGAGTTGAATCTCACCTGGTGTGAGTACCTGGACCCAGACCACTTCG
AGGAGATCTTTGGCAACCTACAGCTGACCAAGCTGACTATGCTCTATTAC
GGATATAACGTGAAC

BS14332.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-PA 1206 CG13088-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-RA 1454 CG13088-RA 51..599 17..565 2745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8489266..8489636 195..565 1855 100 Plus
2L 23513712 2L 8489031..8489208 17..194 890 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:09:38 has no hits.

BS14332.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:23 Download gff for BS14332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13088-PA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:38 Download gff for BS14332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 44..599 7..565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:27:58 Download gff for BS14332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 44..599 7..565 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:27:58 Download gff for BS14332.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8489024..8489208 7..194 97 -> Plus
2L 8489266..8489636 195..565 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:38 Download gff for BS14332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8489024..8489208 7..194 97 -> Plus
arm_2L 8489266..8489636 195..565 100   Plus

BS14332.complete Sequence

1238 bp assembled on 2010-05-12

GenBank Submission: KX805349

> BS14332.complete
GAAGTTATCAGTCGACATGGAGCAAATAAATGAAGATGTTTGGATAGATA
TACTAAAGTACCTACCAATGAGGGATCAGTTGTCGCTGGTCGAAGTCAAC
GAGAATATATCGGCATACGTGAAGTATCATTGGAGTCATCTCAAAACAGT
GACTCTGACCCGCGAGGATCTGGATTTTCTGGATCGGAATAACAAGCTGA
TGCACGAATGTCTGGGTGGCTGGTCGGCAACGGTGGAGCGTTTGAATTTG
CAAAGTGCCAGCAGTGATCTGCTGAGAAAGTGGACGGAATACGACTTTCC
CCACCTCCGATCGCTCGACTGCCACATGGACTACAATCTCGAGGAGGCGG
ACGAGGAAACCCTTCTGCTAACCGAGCTGTTCCCGCTCTTGACACGGCTG
TCACTCAATAGCAGCACAACAGGTCGTTACTTGTGGCACTGGAAGCAACT
AAGGGAGTTGAATCTCACCTGGTGTGAGTACCTGGACCCAGACCACTTCG
AGGAGATCTTTGGCAACCTACAGCTGACCAAGCTGACTATGCTCTATTAC
GGATATAACGTGAACCTAGGCGAAAAAGTTGTGGACATAACGCGATGTAC
CACGCTTGAAGAGCTGCACATCGATGACCACCATTTGCTGGGTGATTTCC
TGCCCCGACTGATGAATCTGCCGCACTTCCGCCGCTTGGCCTTTTACACG
CGAGACTACTATGAGTATTTGCTAGGTTCGGTGGCCAGGCACAAGCCGCT
GAAGGTTCAATCGCTTCTCTTCAACGACTCTTTCTGGAGCAGTGAACGGG
TGGCGGGAAGTATACTGCACATGACCAATCTTCGTCGGCTGGTCCTGCAG
GAGGATGACATCGATGCGCAGCAGCTGCACACCATCTGCCACAAATTGCC
AAACTTGGAGGAGCTACACCTTTTGGCGATGCGAGAAGTTCCGTCTCCCA
GCCACCTGTGGAACTCTATAGGTCACTGCCATCTTCTTAGGATTCTTAAC
CTATCGTCTACCAAGCTGGTGGACCTCCGAAGCTCCTGCCTGACAAAAGT
TCTGCTAAGTCGCAGGATTCCACTGACCCTGCATCTCCACAACACTGGAT
TGGATCCTAGTAAAGTTCTACGGGATTTTGATAGTGCCTCCTTGAAAATC
TCCTTTGAGCCGATCCATTTGAATATTTGGAGTCCGCGATTTGTGGAAAT
CGAATTCAGTCCAGACTCGTAGAAGCTTTCTAGACCAT

BS14332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-RA 1206 CG13088-PA 1..1206 17..1222 6030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-RA 1454 CG13088-RA 51..1256 17..1222 6030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8489266..8490187 195..1116 4610 100 Plus
2L 23513712 2L 8489031..8489208 17..194 890 100 Plus
2L 23513712 2L 8490241..8490348 1115..1222 540 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:04:31 has no hits.

BS14332.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:53 Download gff for BS14332.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 73..1278 17..1222 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:06 Download gff for BS14332.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 51..1256 17..1222 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:08 Download gff for BS14332.complete
Subject Subject Range Query Range Percent Splice Strand
CG13088-RA 51..1256 17..1222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:08 Download gff for BS14332.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8489031..8489208 17..194 100 -> Plus
2L 8489266..8490185 195..1114 100 -> Plus
2L 8490241..8490348 1115..1222 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:06 Download gff for BS14332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8489031..8489208 17..194 100 -> Plus
arm_2L 8489266..8490185 195..1114 100 -> Plus
arm_2L 8490241..8490348 1115..1222 100   Plus

BS14332.pep Sequence

Translation from 16 to 1221

> BS14332.pep
MEQINEDVWIDILKYLPMRDQLSLVEVNENISAYVKYHWSHLKTVTLTRE
DLDFLDRNNKLMHECLGGWSATVERLNLQSASSDLLRKWTEYDFPHLRSL
DCHMDYNLEEADEETLLLTELFPLLTRLSLNSSTTGRYLWHWKQLRELNL
TWCEYLDPDHFEEIFGNLQLTKLTMLYYGYNVNLGEKVVDITRCTTLEEL
HIDDHHLLGDFLPRLMNLPHFRRLAFYTRDYYEYLLGSVARHKPLKVQSL
LFNDSFWSSERVAGSILHMTNLRRLVLQEDDIDAQQLHTICHKLPNLEEL
HLLAMREVPSPSHLWNSIGHCHLLRILNLSSTKLVDLRSSCLTKVLLSRR
IPLTLHLHNTGLDPSKVLRDFDSASLKISFEPIHLNIWSPRFVEIEFSPD
S*

BS14332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG13088-PA 401 CG13088-PA 1..401 1..401 2137 100 Plus
CG31633-PA 408 CG31633-PA 4..384 1..380 365 29 Plus
CG14937-PA 445 CG14937-PA 16..370 3..332 244 23.8 Plus