Clone BS14337 Report

Search the DGRC for BS14337

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:37
Vector:pDNR-Dual
Associated Gene/TranscriptCG11885-RA
Protein status:BS14337.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14337.3prime Sequence

450 bp (448 high quality bases) assembled on 2006-10-13

> BS14337.3prime
ATGGTCTAGAAAGCTTCTAGAATAACGTCTCCTCGAGGACCTTAGCTAGG
GCACGAAGATTGGGTCCGTCGATTTTCTTGAGACCCAGGCCCACCACGAA
CTCCGTCGGGCACTTGTGGAGTCCGGTTCTGTTGACCAGAAACTGTATGG
CGCTGCGAGTCTCGTCGGTGTCCAAGCCCAAGCAGCAGTTCATCGTGATT
GGCACCGATACGTGGAACTCCGGATTGTCCACGGGTCCGTGCAAATAGGG
AACCACTCTTTCGTCCTTTTTGACATCGAAGTGCACGTTGTAGATGCCGG
GAATCTTGCCGAGCTGCGTTATGACTAAGAACCACTTCTTGGCAAAGCAG
TGGAACACTATCTCCGTGGGAACGCCGTTCACGTCCGCTGAGAACTGCCT
GTCGAATCCGATTTGTCGAGGTTTGTTTGCTGTGTGATTCATGTCGACTG

BS14337.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11885-PA 426 CG11885-RA 1..426 442..17 2080 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11885-RA 556 CG11885-RA 85..510 442..17 2100 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:41:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 420941..421366 17..442 2100 99.5 Plus
Blast to na_te.dros performed on 2015-02-08 11:41:55 has no hits.

BS14337.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:26 Download gff for BS14337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11885-PA 1..426 17..442 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:13 Download gff for BS14337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11885-RA 85..519 9..442 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:34 Download gff for BS14337.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11885-RA 85..519 9..442 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:34 Download gff for BS14337.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 420932..421366 9..442 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:13 Download gff for BS14337.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 420932..421366 9..442 98   Plus

BS14337.5prime Sequence

463 bp (384 high quality bases) assembled on 2006-10-13

> BS14337.5prime
GAAGTTATCAGTCGACATGAATCACACAGCAAACAAACCTCGACAAATCG
GATTCGACAGGCAGTTCTCAGCGGACGTGAACGGCGTTCCCACGGAGATA
GTGTTCCACTGCTTTGCCAAGAAGTGGTTCTTAGTCATAACGCAGCTCGG
CAAGATTCCCGGCATCTACAACGTGCACTTCGATGTCAAAAAGGACGAAA
GAGTGGTTCCCTATTTGCACGGACCCGTGGACAATCCGGAGTTCCACGTA
TCGGTGCCAATCACGATGAACTGCTGCTTGGGCTTGGACACCGACGAGAC
TCGCAGCGCCATACAGTTTCTGGTCAACAGAACCGGACTCCACAAGTGCC
CCGACGGAGTTCGTGGTGGGCCTGGGTCTCAAGAAAATCGACGGACCCCA
TCTTCGTGCCCTAAGCTAAGGTCCTCGAGGAGACGTTATTCTAGAAGCCT
TCTTGACCATTTC

BS14337.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11885-PA 426 CG11885-RA 1..335 17..351 1650 99.7 Plus
CG11885-PA 426 CG11885-RA 333..396 350..413 270 96.8 Plus
CG11885-PA 426 CG11885-RA 396..426 414..444 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11885-RA 556 CG11885-RA 85..510 17..444 2045 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 420941..421366 444..17 1995 98.8 Minus
Blast to na_te.dros performed on 2015-02-08 11:42:09 has no hits.

BS14337.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:26 Download gff for BS14337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11885-PA 1..426 17..444 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:14 Download gff for BS14337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11885-RA 85..519 17..452 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:36 Download gff for BS14337.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11885-RA 85..519 17..452 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:36 Download gff for BS14337.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 420932..421366 17..452 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:14 Download gff for BS14337.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 420932..421366 17..452 97   Minus

BS14337.complete Sequence

458 bp assembled on 2006-11-01

GenBank Submission: FJ637636

> BS14337.complete
GAAGTTATCAGTCGACATGAATCACACAGCAAACAAACCTCGACAAATCG
GATTCGACAGGCAGTTCTCAGCGGACGTGAACGGCGTTCCCACGGAGATA
GTGTTCCACTGCTTTGCCAAGAAGTGGTTCTTAGTCATAACGCAGCTCGG
CAAGATTCCCGGCATCTACAACGTGCACTTCGATGTCAAAAAGGACGAAA
GAGTGGTTCCCTATTTGCACGGACCCGTGGACAATCCGGAGTTCCACGTA
TCGGTGCCAATCACGATGAACTGCTGCTTGGGCTTGGACACCGACGAGAC
TCGCAGCGCCATACAGTTTCTGGTCAACAGAACCGGACTCCACAAGTGCC
CGACGGAGTTCGTGGTGGGCCTGGGTCTCAAGAAAATCGACGGACCCAAT
CTTCGTGCCCTAGCTAAGGTCCTCGAGGAGACGTTATTCTAGAAGCTTTC
TAGACCAT

BS14337.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11885-RA 426 CG11885-PA 1..426 17..442 2100 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11885-RA 556 CG11885-RA 85..510 17..442 2100 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 420941..421366 442..17 2100 99.5 Minus
Blast to na_te.dros performed on 2014-11-27 06:55:49 has no hits.

BS14337.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:11 Download gff for BS14337.complete
Subject Subject Range Query Range Percent Splice Strand
CG11885-RA 1..426 17..442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:30 Download gff for BS14337.complete
Subject Subject Range Query Range Percent Splice Strand
CG11885-RA 42..476 17..450 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:17 Download gff for BS14337.complete
Subject Subject Range Query Range Percent Splice Strand
CG11885-RA 85..510 17..442 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:11 Download gff for BS14337.complete
Subject Subject Range Query Range Percent Splice Strand
CG11885-RA 42..476 17..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:17 Download gff for BS14337.complete
Subject Subject Range Query Range Percent Splice Strand
CG11885-RA 85..510 17..442 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:17 Download gff for BS14337.complete
Subject Subject Range Query Range Percent Splice Strand
2L 420941..421366 17..442 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:17 Download gff for BS14337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 420941..421366 17..442 99   Minus

BS14337.pep Sequence

Translation from 16 to 441

> BS14337.pep
MNHTANKPRQIGFDRQFSADVNGVPTEIVFHCFAKKWFLVITQLGKIPGI
YNVHFDVKKDERVVPYLHGPVDNPEFHVSVPITMNCCLGLDTDETRSAIQ
FLVNRTGLHKCPTEFVVGLGLKKIDGPNLRALAKVLEETLF*

BS14337.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11885-PA 141 CG11885-PA 1..141 1..141 758 100 Plus