Clone Sequence Records
BS14338.3prime Sequence
455 bp (421 high quality bases) assembled on 2006-10-13
> BS14338.3prime
ATGGTCTAGAAAGCTTTCATTGGAAACTCTCTACAATCACTTTGAGCTGA
CGTTGCAGCTTTCTGTTGAATTCCACGGACAGCAGCTGACGGTCCCCGCA
AAGTGGAGTATCGCCTCCCCTTCTGGTGACCCCATTCTCGTTGAACAAAT
GTGAAATAGAGACTGCAGAGGTCACCTCCTGTTTAGAGGGCTTCCATCCA
TAATCATTAGGGGCAGATTCGCTAAAGCTTTGGAGGAATTTCTCTGCAAG
CAGGGCAACGCGATCGTCCGGACGGGGAGTATAGTTATCTTTGATCACCT
CCGAGCGACGAGTAAAGATAACATTGGGCTTATAGCTCAGACTACTCGGC
TCTATGGGCGAACGGGTTCTTAAACTAATATTGGGGCTGATGGAGGAGGT
AGTCTTTCTGGTAGTGAGTGCCGCTGCCATCAACTTGGCCCGAATCTTCT
CCTCG
BS14338.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14660-PA | 2262 | laf-RA | 1824..2262 | 455..17 | 2195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laf-RB | 2407 | CG14660-RB | 1884..2324 | 455..15 | 2205 | 100 | Minus |
| laf-RA | 2401 | CG14660-RA | 1878..2318 | 455..15 | 2205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4876088..4876528 | 15..455 | 2205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:44:08 has no hits.
BS14338.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:26 Download gff for
BS14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14660-PA | 1824..2262 | 17..455 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:17:43 Download gff for
BS14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laf-RA | 1878..2323 | 8..455 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:52 Download gff for
BS14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laf-RA | 1878..2323 | 8..455 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:52 Download gff for
BS14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4876083..4876528 | 8..455 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:17:43 Download gff for
BS14338.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 701805..702250 | 8..455 | 99 | | Plus |
BS14338.5prime Sequence
499 bp (431 high quality bases) assembled on 2006-10-13
> BS14338.5prime
GAAGTTATCAGTCGACATGTCCCGTCATGGTCAGCACTACATAAGCGCCA
GAAGTGTGTCGGCAAAGGACCTGGACGATTCTGAATCGGGAGGAGATAAG
AGTAAGAGTAAGGAACGAGTAAGGAACTTAGTTCTCAAGAAGGTGTGCCG
CGGACGGAACGTCCAGGACTCTCCAGGATACAGGGGAAAGGCAATGTTGA
ACTGCTCTAATAGGACAAGAAAATACAGCAAGCATTCAAAAGACAATCTC
CATTCGGGAAATGAGGACGGAGGTATGCCCAAGGACACAGAGTACATTTC
AAGTGATCACGATGACTCGCCGTCCTGGTCTCAGCAGAGCCTGCTATCCA
GTGATCGTTCCAAAAGCTATAGTCAGATATGTAGCGAAATCTTGGAAGAG
TCTAAGGAACGACAAGAGAAGGCAGAGTGCGCTTTTCGCGTCTACAATAT
AAACAGATCCAAGCTGCGTAGGTCCCATCAACAATCCTTGTCCAGGGGT
BS14338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14660-PA | 2262 | laf-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laf-RB | 2407 | CG14660-RB | 55..537 | 17..499 | 2415 | 100 | Plus |
| laf-RA | 2401 | CG14660-RA | 55..537 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4877946..4878426 | 499..19 | 2405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:44:21 has no hits.
BS14338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:27 Download gff for
BS14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14660-PA | 1..483 | 17..499 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:17:45 Download gff for
BS14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laf-RA | 52..537 | 14..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:27:56 Download gff for
BS14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laf-RA | 52..537 | 14..499 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:27:56 Download gff for
BS14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4877946..4878432 | 12..499 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:17:45 Download gff for
BS14338.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 703668..704154 | 12..499 | 99 | | Minus |
BS14338.complete Sequence
2294 bp assembled on 2010-09-10
GenBank Submission: KX801045
> BS14338.complete
GAAGTTATCAGTCGACATGTCCCGTCATGGTCAGCACTACATAAGCGCCA
GAAGTGTGTCGGCAAAGGACCTGGACGATTCTGAATCGGGAGGAGATAAG
AGTAAGAGTAAGGAACGAGTAAGGAACTTAGTTCTCAAGAAGGTGTGCCG
CGGACGGAACGTCCAGGACTCTCCAGGATACAGGGGAAAGGCAATGTTGA
ACTGCTCTAATAGGACAAGAAAATACAGCAAGCATTCAAAAGACAATCTC
CATTCGGGAAATGAGGACGGAGGTATGCCCAAGGACACAGAGTACATTTC
AAGTGATCACGATGACTCGCCGTCCTGGTCTCAGCAGAGCCTGCTATCCA
GTGATCGTTCCAAAAGCTATAGTCAGATATGTAGCGAAATCTTGGAAGAG
TCTAAGGAACGACAAGAGAAGGCAGAGTGCGCTTTTCGCGTCTACAATAT
AAACAGATCCAAGCTGCGTAGGTCCCATCAACAATCCTTGTCCAGGGGTC
CGGGAAGTGGGAGTTATGGGAGCAGCATGGCCTCAGAGTATTCAAGTAAA
TCGGAAGCAGGCTACCAGGACTATGACAGTCCATCGACAGATCCTTCACG
AGAACACGTTCAAATGGCAAATGTGGCAAATATAGATAAGTGGACTAGAC
CAAAACAGTTCAAGGTAGAGTCATATAAAATGGAAATAAAAGAAAGGCCC
AATTACCGCAAAACTCAAGAAGTAAGCCACTCGTATTCATGTCCATTGGA
AAGTAGGATTTCAAAAGGTTCTTTAGTTACCAGGCACAGAGCAAGATCAT
GCGTCTGCGCACAAGAGTCCTCGGCTTGTAGCCTTTGCACTGCCCACTCC
AGATCAGGAAAGCACCATTCCGAGGGCTGCGACGCAGAGGTGATTGATGG
ACCCGATTATCCTGTAGACTGCAGAAGTGACATTCCTACAACTGCGACAT
CGCAATCGCGCTCACAAAGAGATTATCTTTCGAGCTGCTGCACACGCCAT
CGTCATCATCCTCATTATCATCGCCAGAGGAGTGTGCCAAAGACATATCA
AGATCGTGGAAATAGTCCCATTAACATCAAGACGAGGCGCAAGACGCGCG
ACTACCAGGAACCTCACTTCGCATTTCGCACCGAGAAAGTGGAGGCGGCG
GTTCAGCTCAGCAGATCAAGTGCCTCCATTGGGGTGCAATATCCCAGTCA
AGACGAGAACGCGGATTGGACTGATTGGACTCCAGATACAACACAGGGTG
ACCGACAGTTCAAAGGTCATGATGGCGATTGCTTGAGATCAACAGAAAAA
AAACGGTCTATATCTAATGAGCAAAGTCCAATTACGCTAAGGAATACAAA
TGCTAAGGATGTCGACATACCTGATTGTTTTGGATCATTTGCCATGAATA
AGCATCTTAGTGTCATTACCGAGGATGCATCTCAACACCACAAAGATCCA
GATGAAGATATGATCGATAGTCAGCTAAGTAATTCCGTTCTTCTCGAGAC
CTACGACGAAGGTGAGAAATATGCTTATAGTTATCAGTACAGCTACAAAC
CCGAGATATGCAATAATAACCAGTTCGTTTCCGATGAATCTGATCTTAAG
GTCTCCAGTAAGGAAGGCTATCAAATGGATCAAGAAGACTATGTAATGGA
TAAGCAAGAGCTTGTCCATGAAGGTGGATCAGATGCATCTTTGAGTGAAG
TAGCCAAGTCGAAAAGCTTTCTAAGCCTTAAGATATACGACGCTGACGAA
GCCCTGATGGAAATTCCAGAGGACTTCGAGGGCCCTGCAATAGTTCTGGA
TGATGATGCCGACTTTTTGGACATCACACTGACCGACGACGAGGAGAAGA
TTCGGGCCAAGTTGATGGCAGCGGCACTCACTACCAGAAAGACTACCTCC
TCCATCAGCCCCAATATTAGTTTAAGAACCCGTTCGCCCATAGAGCCGAG
TAGTCTGAGCTATAAGCCCAATGTTATCTTTACTCGTCGCTCGGAGGTGA
TCAAAGATAACTATACTCCCCGTCCGGACGATCGCGTTGCCCTGCTTGCA
GAGAAATTCCTCCAAAGCTTTAGCGAATCTGCCCCTAATGATTATGGATG
GAAGCCCTCTAAACAGGAGGTGACCTCTGCAGTCTCTATTTCACATTTGT
TCAACGAGAATGGGGTCACCAGAAGGGGAGGCGATACTCCACTTTGCGGG
GACCGTCAGCTGCTGTCCGTGGAATTCAACAGAAAGCTGCAACGTCAGCT
CAAAGTGATTGTAGAGAGTTTCCAATGAAAGCTTTCTAGACCAT
BS14338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laf-RA | 2262 | CG14660-PA | 1..2262 | 17..2278 | 11310 | 100 | Plus |
| laf-RB | 2268 | CG14660-PB | 1..2268 | 17..2278 | 11215 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laf-RA | 2401 | CG14660-RA | 55..2318 | 17..2280 | 11320 | 100 | Plus |
| laf-RB | 2407 | CG14660-RB | 55..2324 | 17..2280 | 11225 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4876808..4878426 | 1637..19 | 8095 | 100 | Minus |
| 3R | 32079331 | 3R | 4876088..4876731 | 2280..1637 | 3220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:47:28 has no hits.
BS14338.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-10 10:43:04 Download gff for
BS14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laf-RA | 55..2315 | 17..2277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:58 Download gff for
BS14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laf-RA | 55..2315 | 17..2277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:23 Download gff for
BS14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| laf-RA | 55..2315 | 17..2277 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:23 Download gff for
BS14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4876091..4876731 | 1637..2277 | 100 | <- | Minus |
| 3R | 4876809..4878427 | 17..1636 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:58 Download gff for
BS14338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 701813..702453 | 1637..2277 | 100 | <- | Minus |
| arm_3R | 702531..704149 | 17..1636 | 99 | | Minus |
BS14338.pep Sequence
Translation from 16 to 2277
> BS14338.pep
MSRHGQHYISARSVSAKDLDDSESGGDKSKSKERVRNLVLKKVCRGRNVQ
DSPGYRGKAMLNCSNRTRKYSKHSKDNLHSGNEDGGMPKDTEYISSDHDD
SPSWSQQSLLSSDRSKSYSQICSEILEESKERQEKAECAFRVYNINRSKL
RRSHQQSLSRGPGSGSYGSSMASEYSSKSEAGYQDYDSPSTDPSREHVQM
ANVANIDKWTRPKQFKVESYKMEIKERPNYRKTQEVSHSYSCPLESRISK
GSLVTRHRARSCVCAQESSACSLCTAHSRSGKHHSEGCDAEVIDGPDYPV
DCRSDIPTTATSQSRSQRDYLSSCCTRHRHHPHYHRQRSVPKTYQDRGNS
PINIKTRRKTRDYQEPHFAFRTEKVEAAVQLSRSSASIGVQYPSQDENAD
WTDWTPDTTQGDRQFKGHDGDCLRSTEKKRSISNEQSPITLRNTNAKDVD
IPDCFGSFAMNKHLSVITEDASQHHKDPDEDMIDSQLSNSVLLETYDEGE
KYAYSYQYSYKPEICNNNQFVSDESDLKVSSKEGYQMDQEDYVMDKQELV
HEGGSDASLSEVAKSKSFLSLKIYDADEALMEIPEDFEGPAIVLDDDADF
LDITLTDDEEKIRAKLMAAALTTRKTTSSISPNISLRTRSPIEPSSLSYK
PNVIFTRRSEVIKDNYTPRPDDRVALLAEKFLQSFSESAPNDYGWKPSKQ
EVTSAVSISHLFNENGVTRRGGDTPLCGDRQLLSVEFNRKLQRQLKVIVE
SFQ*
BS14338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:29:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| laf-PA | 753 | CG14660-PA | 1..753 | 1..753 | 3949 | 100 | Plus |
| laf-PB | 755 | CG14660-PB | 1..755 | 1..753 | 3936 | 99.7 | Plus |
