Clone Sequence Records
BS14340.3prime Sequence
409 bp (408 high quality bases) assembled on 2006-10-13
> BS14340.3prime
ATGGTCTAGAAAGCTTTCAGTTTGACTTCTTGGCCTTCTTCTGTTGCTTG
CTCTTCAGTTTCTCCTGCTTCTTGAGCTCCTTTTCCGTCAGGGATTTGTA
CAGCTTGTAGCCAAAGAGAGCGAATATGGAGACCAAGAGAAAGATCACTG
CCGACACTATGGAACTGGAGTAGGTCTGTGCGAAATGGGCGTGCTGCACT
ATTCGCTCCTCGATTCTGCCAATCGTCTGCTGGAACTTGTCCTTCATCTC
GGCGAGAAACACATGCCGATCCGTTTCGGCCAGGGACTCCAGCTTGCTCT
GCATCTCGCCGATCCGCTGGACGAGATCCTTGGAGAACTTGCTGCTGGGC
CCAGTTTTGGCCACGATCGACTCCACGGACTTTTTCAGCTGCTCAATAAC
CCCGAGCTC
BS14340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13211-PB | 417 | CG13211-RB | 25..417 | 409..17 | 1965 | 100 | Minus |
| CG13211-PA | 198 | CG13211-RA | 94..198 | 121..17 | 525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42336-RC | 747 | CG42336-RC | 209..602 | 409..16 | 1970 | 100 | Minus |
| CG42336-RD | 707 | CG42336-RD | 97..390 | 409..116 | 1455 | 99.7 | Minus |
| CG42336-RD | 707 | CG42336-RD | 457..562 | 121..16 | 530 | 100 | Minus |
| CG42336-RF | 901 | CG42336-RF | 651..756 | 121..16 | 530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11294853..11295146 | 116..409 | 1455 | 99.7 | Plus |
| 2R | 25286936 | 2R | 11294681..11294786 | 16..121 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:20:32 has no hits.
BS14340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:28 Download gff for
BS14340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13211-PB | 25..417 | 17..409 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:35 Download gff for
BS14340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 209..602 | 16..409 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:34 Download gff for
BS14340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 209..602 | 16..409 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:34 Download gff for
BS14340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11294858..11295146 | 121..409 | 100 | | Plus |
| 2R | 11294681..11294785 | 16..120 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:35 Download gff for
BS14340.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7182186..7182290 | 16..120 | 100 | <- | Plus |
| arm_2R | 7182363..7182651 | 121..409 | 100 | | Plus |
BS14340.5prime Sequence
449 bp (448 high quality bases) assembled on 2006-10-13
> BS14340.5prime
GAAGTTATCAGTCGACATGAGTTGGTCGGGTTCCAGTGACGAGCTCGGGG
TTATTGAGCAGCTGAAAAAGTCCGTGGAGTCGATCGTGGCCAAAACTGGG
CCCAGCAGCAAGTTCTCCAAGGATCTCGTCCAGCGGATCGGCGAGATGCA
GAGCAAGCTGGAGTCCCTGGCCGAAACGGATCGGCATGTGTTTCTCGCCG
AGATGAAGGACAAGTTCCAGCAGACGATTGGCAGAATCGAGGAGCGAATA
GTGCAGCACGCCCATTTCGCACAGACCTACTCCAGTTCCATAGTGTCGGC
AGTGATCTTTCTCTTGGTCTCCATATTCGCTCTCTTTGGCTACAAGCTGT
ACAAAATCCCTGACGGAAAAGGAGCTCAAGAAGCAGGAGAAACTGAAGAG
CCAGCCACAGAAAGAAGGCCAAGAAGTCAAACTGAAAGCTTTCTAGACC
BS14340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13211-PB | 417 | CG13211-RB | 1..339 | 17..355 | 1695 | 100 | Plus |
| CG13211-PB | 417 | CG13211-RB | 337..395 | 354..412 | 245 | 96.6 | Plus |
| CG13211-PA | 198 | CG13211-RA | 118..176 | 354..412 | 245 | 96.6 | Plus |
| CG13211-PA | 198 | CG13211-RA | 94..120 | 329..355 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42336-RC | 747 | CG42336-RC | 183..602 | 15..436 | 2030 | 99.1 | Plus |
| CG42336-RD | 707 | CG42336-RD | 71..390 | 15..334 | 1585 | 99.7 | Plus |
| CG42336-RD | 707 | CG42336-RD | 457..562 | 329..436 | 460 | 96.3 | Plus |
| CG42336-RF | 901 | CG42336-RF | 651..756 | 329..436 | 460 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11294853..11295172 | 334..15 | 1585 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11294681..11294786 | 436..329 | 410 | 96.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:25 has no hits.
BS14340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:28 Download gff for
BS14340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13211-PB | 1..417 | 17..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:55 Download gff for
BS14340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 179..602 | 9..436 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:54 Download gff for
BS14340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 179..602 | 9..436 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:54 Download gff for
BS14340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11294681..11294785 | 330..436 | 96 | <- | Minus |
| 2R | 11294858..11295176 | 9..329 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:55 Download gff for
BS14340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7182186..7182290 | 330..436 | 96 | <- | Minus |
| arm_2R | 7182363..7182681 | 9..329 | 98 | | Minus |
BS14340.complete Sequence
449 bp assembled on 2006-11-01
GenBank Submission: FJ637637
> BS14340.complete
GAAGTTATCAGTCGACATGAGTTGGTCGGGTTCCAGTGACGAGCTCGGGG
TTATTGAGCAGCTGAAAAAGTCCGTGGAGTCGATCGTGGCCAAAACTGGG
CCCAGCAGCAAGTTCTCCAAGGATCTCGTCCAGCGGATCGGCGAGATGCA
GAGCAAGCTGGAGTCCCTGGCCGAAACGGATCGGCATGTGTTTCTCGCCG
AGATGAAGGACAAGTTCCAGCAGACGATTGGCAGAATCGAGGAGCGAATA
GTGCAGCACGCCCATTTCGCACAGACCTACTCCAGTTCCATAGTGTCGGC
AGTGATCTTTCTCTTGGTCTCCATATTCGCTCTCTTTGGCTACAAGCTGT
ACAAATCCCTGACGGAAAAGGAGCTCAAGAAGCAGGAGAAACTGAAGAGC
AAGCAACAGAAGAAGGCCAAGAAGTCAAACTGAAAGCTTTCTAGACCAT
BS14340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42336-RC | 417 | CG42336-PC | 1..417 | 17..433 | 2085 | 100 | Plus |
| CG42336-RD | 489 | CG42336-PD | 1..318 | 17..334 | 1575 | 99.7 | Plus |
| CG42336-RD | 489 | CG42336-PD | 385..489 | 329..433 | 525 | 100 | Plus |
| CG42336-RF | 423 | CG42336-PF | 319..423 | 329..433 | 525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42336-RC | 747 | CG42336-RC | 183..602 | 15..434 | 2100 | 100 | Plus |
| CG42336-RD | 707 | CG42336-RD | 71..390 | 15..334 | 1585 | 99.7 | Plus |
| CG42336-RD | 707 | CG42336-RD | 457..562 | 329..434 | 530 | 100 | Plus |
| CG42336-RF | 901 | CG42336-RF | 651..756 | 329..434 | 530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11294853..11295172 | 334..15 | 1585 | 99.7 | Minus |
| 2R | 25286936 | 2R | 11294681..11294786 | 434..329 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:18:00 has no hits.
BS14340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:12 Download gff for
BS14340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 1..417 | 17..433 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:24 Download gff for
BS14340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 179..602 | 9..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:24:51 Download gff for
BS14340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 185..600 | 17..432 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:13 Download gff for
BS14340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 179..602 | 9..434 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:15 Download gff for
BS14340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42336-RC | 185..600 | 17..432 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:15 Download gff for
BS14340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11294858..11295170 | 17..329 | 100 | | Minus |
| 2R | 11294683..11294785 | 330..432 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:24:51 Download gff for
BS14340.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7182188..7182290 | 330..432 | 100 | <- | Minus |
| arm_2R | 7182363..7182675 | 17..329 | 100 | | Minus |
BS14340.pep Sequence
Translation from 16 to 432
> BS14340.pep
MSWSGSSDELGVIEQLKKSVESIVAKTGPSSKFSKDLVQRIGEMQSKLES
LAETDRHVFLAEMKDKFQQTIGRIEERIVQHAHFAQTYSSSIVSAVIFLL
VSIFALFGYKLYKSLTEKELKKQEKLKSKQQKKAKKSN*
BS14340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42336-PC | 138 | CG13211-PB | 1..138 | 1..138 | 673 | 100 | Plus |
| CG42336-PD | 162 | CG42336-PD | 1..162 | 1..138 | 638 | 85.2 | Plus |
| CG42336-PF | 140 | CG42336-PF | 37..140 | 33..138 | 191 | 45.4 | Plus |
| CG42336-PE | 140 | CG42336-PE | 37..140 | 33..138 | 191 | 45.4 | Plus |
| CG42336-PB | 65 | CG13211-PA | 22..65 | 92..138 | 170 | 78.7 | Plus |
