Clone BS14341 Report

Search the DGRC for BS14341

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG12861-RA
Protein status:BS14341.pep: full length peptide match
Sequenced Size:752

Clone Sequence Records

BS14341.complete Sequence

752 bp assembled on 2010-02-09

GenBank Submission: KX803704

> BS14341.complete
GAAGTTATCAGTCGACATGGGGGTGTTGCAGACAGTCCAACGAACGCTGT
TGATGCAGCACAGCTTGGGATCGCTGACGATCAAGCGCACATACGACACG
GTAAAAAAGATGAATCTGCGTCGCAGGCGTTTGGAGCATCTAAAAGAACT
CAAGCGGCTAGACGAAATGTGCTACAAGGCGGCCAGTCGCAACGATAAGA
AGTGCCATCCGCCAGTGCTACCACTACCCAAGATGGAGTGCATAGACGAC
CCATGTGCGGAATCAGAGATGCCATTGGATCTGGACCACTATACTCCGAG
CGACAAGGCCGCGCGCAAATATCAACGCACCTGGTGCGAGTGCTATATGA
TACCCAAGGCGGCTGTCAAGGCCAGGAAATGCTATCCGAATAGACCGCGG
CGTAAGTTCGAGTGTCCGAGGGTCTCTGATGTCGAGTGCCGCTGGGATCC
CATGCCCTGTGATGACGTGAAGAAAAAGCCCGAGATACTGATTGAAGTGC
CGCGTATCGGGAAGTGGCCATGCTGCAAGATCCCCACGCCAGGTTGCCGC
GATGGCCGGATACCGCCATCCTGCGACGCTGGTCGAATTCCCACCTGCTG
CAAGAAGCGTCGCACCAAGTATCCCAGCTTCTCGGAGTGCAAAAAGGAAC
TGCTCGACCCCATCCCACCATGCGAGTGCGAGAAGAAGGTTAACATGTGC
GACGTGTATGCATATTTCCGCCATAAGACACACTAAAAGCTTTCTAGACC
AT

BS14341.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG12861-RA 720 CG12861-PA 1..720 17..736 3450 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG12861-RA 1111 CG12861-RA 109..828 17..736 3450 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14664529..14665248 736..17 3450 98.6 Minus
Blast to na_te.dros performed on 2014-11-28 04:26:35 has no hits.

BS14341.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:18 Download gff for BS14341.complete
Subject Subject Range Query Range Percent Splice Strand
CG12861-RA 104..821 17..734 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:25 Download gff for BS14341.complete
Subject Subject Range Query Range Percent Splice Strand
CG12861-RA 109..826 17..734 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:23 Download gff for BS14341.complete
Subject Subject Range Query Range Percent Splice Strand
CG12861-RA 104..821 17..734 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:53 Download gff for BS14341.complete
Subject Subject Range Query Range Percent Splice Strand
CG12861-RA 109..826 17..734 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:53 Download gff for BS14341.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14664531..14665248 17..734 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:25 Download gff for BS14341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10552036..10552753 17..734 98   Minus

BS14341.5prime Sequence

466 bp (464 high quality bases) assembled on 2006-10-13

> BS14341.5prime
GAAGTTATCAGTCGACATGGGGGTGTTGCAGACAGTCCAACGAACGCTGT
TGATGCAGCACAGCTTGGGATCGCTGACGATCAAGCGCACATACGACACG
GTAAAAAAGATGAATCTGCGTCGCAGGCGTTTGGAGCATCTAAAAGAACT
CAAGCGGCTAGACGAAATGTGCTACAAGGCGGCCAGTCGCAACGATAAGA
AGTGCCATCCGCCAGTGCTACCACTACCCAAGATGGAGTGCATAGACGAC
CCATGTGCGGAATCAGAGATGCCATTGGATCTGGACCACTATACTCCGAG
CGACAAGGCCGCGCGCAAATATCAACGCACCTGGTGCGAGTGCTATATGA
TACCCAAGGCGGCTGTCAAGGCCAGGAAATGCTATCCGAATAGACCGCGG
CGGAAGTTCGAGTGTCCGAGGGTCTCTGATGTCGAGTGCCGCTGGGATCC
CATGCCCTGTGATGAC

BS14341.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG12861-PA 720 CG12861-RA 1..450 17..466 2025 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG12861-RA 1111 CG12861-RA 109..558 17..466 2115 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14664799..14665248 466..17 2115 98 Minus
Blast to na_te.dros performed on 2015-02-10 18:28:29 has no hits.

BS14341.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:28 Download gff for BS14341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12861-PA 1..450 17..466 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:37 Download gff for BS14341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12861-RA 100..558 8..466 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:58:41 Download gff for BS14341.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12861-RA 100..558 8..466 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:58:41 Download gff for BS14341.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14664799..14665257 8..466 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:37 Download gff for BS14341.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10552304..10552762 8..466 97   Minus

BS14341.pep Sequence

Translation from 16 to 735

> BS14341.pep
MGVLQTVQRTLLMQHSLGSLTIKRTYDTVKKMNLRRRRLEHLKELKRLDE
MCYKAASRNDKKCHPPVLPLPKMECIDDPCAESEMPLDLDHYTPSDKAAR
KYQRTWCECYMIPKAAVKARKCYPNRPRRKFECPRVSDVECRWDPMPCDD
VKKKPEILIEVPRIGKWPCCKIPTPGCRDGRIPPSCDAGRIPTCCKKRRT
KYPSFSECKKELLDPIPPCECEKKVNMCDVYAYFRHKTH*

BS14341.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12861-PA 239 CG12861-PA 1..239 1..239 1351 100 Plus
boly-PA 255 CG30362-PA 64..253 50..237 255 33.5 Plus
CG4691-PA 262 CG4691-PA 52..260 34..237 245 31.7 Plus
CG2127-PB 289 CG2127-PB 116..275 74..237 230 36 Plus
CG2127-PA 305 CG2127-PA 132..291 74..237 230 36 Plus