Clone Sequence Records
BS14341.complete Sequence
752 bp assembled on 2010-02-09
GenBank Submission: KX803704
> BS14341.complete
GAAGTTATCAGTCGACATGGGGGTGTTGCAGACAGTCCAACGAACGCTGT
TGATGCAGCACAGCTTGGGATCGCTGACGATCAAGCGCACATACGACACG
GTAAAAAAGATGAATCTGCGTCGCAGGCGTTTGGAGCATCTAAAAGAACT
CAAGCGGCTAGACGAAATGTGCTACAAGGCGGCCAGTCGCAACGATAAGA
AGTGCCATCCGCCAGTGCTACCACTACCCAAGATGGAGTGCATAGACGAC
CCATGTGCGGAATCAGAGATGCCATTGGATCTGGACCACTATACTCCGAG
CGACAAGGCCGCGCGCAAATATCAACGCACCTGGTGCGAGTGCTATATGA
TACCCAAGGCGGCTGTCAAGGCCAGGAAATGCTATCCGAATAGACCGCGG
CGTAAGTTCGAGTGTCCGAGGGTCTCTGATGTCGAGTGCCGCTGGGATCC
CATGCCCTGTGATGACGTGAAGAAAAAGCCCGAGATACTGATTGAAGTGC
CGCGTATCGGGAAGTGGCCATGCTGCAAGATCCCCACGCCAGGTTGCCGC
GATGGCCGGATACCGCCATCCTGCGACGCTGGTCGAATTCCCACCTGCTG
CAAGAAGCGTCGCACCAAGTATCCCAGCTTCTCGGAGTGCAAAAAGGAAC
TGCTCGACCCCATCCCACCATGCGAGTGCGAGAAGAAGGTTAACATGTGC
GACGTGTATGCATATTTCCGCCATAAGACACACTAAAAGCTTTCTAGACC
AT
BS14341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12861-RA | 720 | CG12861-PA | 1..720 | 17..736 | 3450 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12861-RA | 1111 | CG12861-RA | 109..828 | 17..736 | 3450 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14664529..14665248 | 736..17 | 3450 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:26:35 has no hits.
BS14341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:11:18 Download gff for
BS14341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12861-RA | 104..821 | 17..734 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:25 Download gff for
BS14341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12861-RA | 109..826 | 17..734 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:23 Download gff for
BS14341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12861-RA | 104..821 | 17..734 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:53 Download gff for
BS14341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12861-RA | 109..826 | 17..734 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:53 Download gff for
BS14341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14664531..14665248 | 17..734 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:25 Download gff for
BS14341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10552036..10552753 | 17..734 | 98 | | Minus |
BS14341.5prime Sequence
466 bp (464 high quality bases) assembled on 2006-10-13
> BS14341.5prime
GAAGTTATCAGTCGACATGGGGGTGTTGCAGACAGTCCAACGAACGCTGT
TGATGCAGCACAGCTTGGGATCGCTGACGATCAAGCGCACATACGACACG
GTAAAAAAGATGAATCTGCGTCGCAGGCGTTTGGAGCATCTAAAAGAACT
CAAGCGGCTAGACGAAATGTGCTACAAGGCGGCCAGTCGCAACGATAAGA
AGTGCCATCCGCCAGTGCTACCACTACCCAAGATGGAGTGCATAGACGAC
CCATGTGCGGAATCAGAGATGCCATTGGATCTGGACCACTATACTCCGAG
CGACAAGGCCGCGCGCAAATATCAACGCACCTGGTGCGAGTGCTATATGA
TACCCAAGGCGGCTGTCAAGGCCAGGAAATGCTATCCGAATAGACCGCGG
CGGAAGTTCGAGTGTCCGAGGGTCTCTGATGTCGAGTGCCGCTGGGATCC
CATGCCCTGTGATGAC
BS14341.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:11:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12861-PA | 720 | CG12861-RA | 1..450 | 17..466 | 2025 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12861-RA | 1111 | CG12861-RA | 109..558 | 17..466 | 2115 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14664799..14665248 | 466..17 | 2115 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:28:29 has no hits.
BS14341.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:28 Download gff for
BS14341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12861-PA | 1..450 | 17..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:53:37 Download gff for
BS14341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12861-RA | 100..558 | 8..466 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:58:41 Download gff for
BS14341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12861-RA | 100..558 | 8..466 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:58:41 Download gff for
BS14341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14664799..14665257 | 8..466 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:53:37 Download gff for
BS14341.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10552304..10552762 | 8..466 | 97 | | Minus |
BS14341.pep Sequence
Translation from 16 to 735
> BS14341.pep
MGVLQTVQRTLLMQHSLGSLTIKRTYDTVKKMNLRRRRLEHLKELKRLDE
MCYKAASRNDKKCHPPVLPLPKMECIDDPCAESEMPLDLDHYTPSDKAAR
KYQRTWCECYMIPKAAVKARKCYPNRPRRKFECPRVSDVECRWDPMPCDD
VKKKPEILIEVPRIGKWPCCKIPTPGCRDGRIPPSCDAGRIPTCCKKRRT
KYPSFSECKKELLDPIPPCECEKKVNMCDVYAYFRHKTH*
BS14341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12861-PA | 239 | CG12861-PA | 1..239 | 1..239 | 1351 | 100 | Plus |
boly-PA | 255 | CG30362-PA | 64..253 | 50..237 | 255 | 33.5 | Plus |
CG4691-PA | 262 | CG4691-PA | 52..260 | 34..237 | 245 | 31.7 | Plus |
CG2127-PB | 289 | CG2127-PB | 116..275 | 74..237 | 230 | 36 | Plus |
CG2127-PA | 305 | CG2127-PA | 132..291 | 74..237 | 230 | 36 | Plus |