Clone BS14343 Report

Search the DGRC for BS14343

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG6914-RA
Protein status:BS14343.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14343.3prime Sequence

464 bp (451 high quality bases) assembled on 2006-10-13

> BS14343.3prime
ATGGTCTAGAAAGCTTTTAATGTGGCCCCTCCCAAGAATGCACCTTTCCT
GGAGTCGGGAGCTTCTTCGCGCCGGAATTGCCTTCATCGCATTCATTTGT
ATCAGTAGTCTTGGGCCCGACAGGTGGAATGGGGCTACCATCTTTCGGCG
CATCTCCAGACTTGGCCTGAGCCTTTTTGGCTGCTTCCTCCTCCTTCACC
TTGGCGGTGAGCATCTTCTTGTGCTCCTGCACCACGTCGACGAAGGGCTT
CACCAAGCGCCGAGGATCCCTGGTGTAGTAGTAGTTGGCGAACAGACTCT
GGGTAGGACCACTAGGGATGTTTGGGGGCGGCTGAGTGCGCGGAGAGACC
ATGTCCGCGAAGCGATGGGCCGTCTTTGTGGGTGCGGCCCAGCAGGAAGT
TGCGCACCCGGCTGAGAAAGCCGGCTACGTCGCGATGCTTGGGTTTCGGA
GGCATGTCCACTGA

BS14343.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-PA 438 CG6914-RA 79..438 376..17 1800 100 Minus
CG6914-PA 438 CG6914-RA 1..80 455..376 400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-RA 758 CG6914-RA 67..508 459..17 2175 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22606435..22606876 459..17 2150 99.5 Minus
Blast to na_te.dros performed on 2015-02-10 21:08:19 has no hits.

BS14343.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:29 Download gff for BS14343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-PA 1..438 17..455 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:12 Download gff for BS14343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 61..515 9..463 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:21 Download gff for BS14343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 61..515 9..463 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:21 Download gff for BS14343.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 22606429..22606883 9..463 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:12 Download gff for BS14343.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22599529..22599983 9..463 98   Minus

BS14343.5prime Sequence

468 bp (468 high quality bases) assembled on 2006-10-13

> BS14343.5prime
GAAGTTATCAGTCGACATGCCTCCGAAACCCAAGCATCGCGACGTAGCCG
GCTTTCTCAGCCGGGTGCGCAACTTCCTGCTGGGCCGCACCCACAAGACG
GCCCATCGCTTCGCGGACATGGTCTCTCCGCGCACTCAGCCGCCCCCAAA
CATCCCTAGTGGTCCTACCCAGAGTCTGTTCGCCAACTACTACTACACCA
GGGATCCTCGGCGCTTGGTGAAGCCCTTCGTCGACGTGGTGCAGGAGCAC
AAGAAGATGCTCACCGCCAAGGTGAAGGAGGAGGAAGCAGCCAAAAAGGC
TCAGGCCAAGTCTGGAGATGCGCCGAAAGATGGTAGCCCCATTCCACCTG
TCGGGCCCAAGACTACTGATACAAATGAATGCGATGAAGGCAATTCCGGC
GCGAAGAAGCTCCCGACTCCAGGAAAGGTGCATTCTTGGGAGGGGCCACA
TTAAAAGCTTTCTAGACC

BS14343.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-PA 438 CG6914-RA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-RA 758 CG6914-RA 71..508 17..454 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22606439..22606876 17..454 2190 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:05:31 has no hits.

BS14343.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:29 Download gff for BS14343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-PA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:46 Download gff for BS14343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 10..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:24 Download gff for BS14343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 10..462 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:24 Download gff for BS14343.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 22606431..22606883 10..462 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:46 Download gff for BS14343.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22599531..22599983 10..462 98   Plus

BS14343.complete Sequence

470 bp assembled on 2006-11-01

GenBank Submission: FJ637638

> BS14343.complete
GAAGTTATCAGTCGACATGCCTCCGAAACCCAAGCATCGCGACGTAGCCG
GCTTTCTCAGCCGGGTGCGCAACTTCCTGCTGGGCCGCACCCACAAGACG
GCCCATCGCTTCGCGGACATGGTCTCTCCGCGCACTCAGCCGCCCCCAAA
CATCCCTAGTGGTCCTACCCAGAGTCTGTTCGCCAACTACTACTACACCA
GGGATCCTCGGCGCTTGGTGAAGCCCTTCGTCGACGTGGTGCAGGAGCAC
AAGAAGATGCTCACCGCCAAGGTGAAGGAGGAGGAAGCAGCCAAAAAGGC
TCAGGCCAAGTCTGGAGATGCGCCGAAAGATGGTAGCCCCATTCCACCTG
TCGGGCCCAAGACTACTGATACAAATGAATGCGATGAAGGCAATTCCGGC
GCGAAGAAGCTCCCGACTCCAGGAAAGGTGCATTCTTGGGAGGGGCCACA
TTAAAAGCTTTCTAGACCAT

BS14343.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-RA 438 CG6914-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-RA 758 CG6914-RA 71..508 17..454 2190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22606439..22606876 17..454 2190 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:34:42 has no hits.

BS14343.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:14 Download gff for BS14343.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 1..438 17..454 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:25 Download gff for BS14343.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 10..462 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:00 Download gff for BS14343.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 71..506 17..452 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:14 Download gff for BS14343.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 63..515 10..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:57 Download gff for BS14343.complete
Subject Subject Range Query Range Percent Splice Strand
CG6914-RA 71..506 17..452 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:57 Download gff for BS14343.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22606439..22606874 17..452 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:00 Download gff for BS14343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22599539..22599974 17..452 100   Plus

BS14343.pep Sequence

Translation from 16 to 453

> BS14343.pep
MPPKPKHRDVAGFLSRVRNFLLGRTHKTAHRFADMVSPRTQPPPNIPSGP
TQSLFANYYYTRDPRRLVKPFVDVVQEHKKMLTAKVKEEEAAKKAQAKSG
DAPKDGSPIPPVGPKTTDTNECDEGNSGAKKLPTPGKVHSWEGPH*

BS14343.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6914-PA 145 CG6914-PA 1..145 1..145 787 100 Plus
CG3621-PB 103 CG3621-PB 6..103 8..142 215 40 Plus
CG3621-PA 103 CG3621-PA 6..103 8..142 215 40 Plus