Clone Sequence Records
BS14343.3prime Sequence
464 bp (451 high quality bases) assembled on 2006-10-13
> BS14343.3prime
ATGGTCTAGAAAGCTTTTAATGTGGCCCCTCCCAAGAATGCACCTTTCCT
GGAGTCGGGAGCTTCTTCGCGCCGGAATTGCCTTCATCGCATTCATTTGT
ATCAGTAGTCTTGGGCCCGACAGGTGGAATGGGGCTACCATCTTTCGGCG
CATCTCCAGACTTGGCCTGAGCCTTTTTGGCTGCTTCCTCCTCCTTCACC
TTGGCGGTGAGCATCTTCTTGTGCTCCTGCACCACGTCGACGAAGGGCTT
CACCAAGCGCCGAGGATCCCTGGTGTAGTAGTAGTTGGCGAACAGACTCT
GGGTAGGACCACTAGGGATGTTTGGGGGCGGCTGAGTGCGCGGAGAGACC
ATGTCCGCGAAGCGATGGGCCGTCTTTGTGGGTGCGGCCCAGCAGGAAGT
TGCGCACCCGGCTGAGAAAGCCGGCTACGTCGCGATGCTTGGGTTTCGGA
GGCATGTCCACTGA
BS14343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6914-PA | 438 | CG6914-RA | 79..438 | 376..17 | 1800 | 100 | Minus |
CG6914-PA | 438 | CG6914-RA | 1..80 | 455..376 | 400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6914-RA | 758 | CG6914-RA | 67..508 | 459..17 | 2175 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22606435..22606876 | 459..17 | 2150 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:08:19 has no hits.
BS14343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:29 Download gff for
BS14343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-PA | 1..438 | 17..455 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:12 Download gff for
BS14343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-RA | 61..515 | 9..463 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:21 Download gff for
BS14343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-RA | 61..515 | 9..463 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:21 Download gff for
BS14343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22606429..22606883 | 9..463 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:12 Download gff for
BS14343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22599529..22599983 | 9..463 | 98 | | Minus |
BS14343.5prime Sequence
468 bp (468 high quality bases) assembled on 2006-10-13
> BS14343.5prime
GAAGTTATCAGTCGACATGCCTCCGAAACCCAAGCATCGCGACGTAGCCG
GCTTTCTCAGCCGGGTGCGCAACTTCCTGCTGGGCCGCACCCACAAGACG
GCCCATCGCTTCGCGGACATGGTCTCTCCGCGCACTCAGCCGCCCCCAAA
CATCCCTAGTGGTCCTACCCAGAGTCTGTTCGCCAACTACTACTACACCA
GGGATCCTCGGCGCTTGGTGAAGCCCTTCGTCGACGTGGTGCAGGAGCAC
AAGAAGATGCTCACCGCCAAGGTGAAGGAGGAGGAAGCAGCCAAAAAGGC
TCAGGCCAAGTCTGGAGATGCGCCGAAAGATGGTAGCCCCATTCCACCTG
TCGGGCCCAAGACTACTGATACAAATGAATGCGATGAAGGCAATTCCGGC
GCGAAGAAGCTCCCGACTCCAGGAAAGGTGCATTCTTGGGAGGGGCCACA
TTAAAAGCTTTCTAGACC
BS14343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6914-PA | 438 | CG6914-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6914-RA | 758 | CG6914-RA | 71..508 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22606439..22606876 | 17..454 | 2190 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:05:31 has no hits.
BS14343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:29 Download gff for
BS14343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-PA | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:46 Download gff for
BS14343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-RA | 63..515 | 10..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:24 Download gff for
BS14343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-RA | 63..515 | 10..462 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:24 Download gff for
BS14343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22606431..22606883 | 10..462 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:46 Download gff for
BS14343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22599531..22599983 | 10..462 | 98 | | Plus |
BS14343.complete Sequence
470 bp assembled on 2006-11-01
GenBank Submission: FJ637638
> BS14343.complete
GAAGTTATCAGTCGACATGCCTCCGAAACCCAAGCATCGCGACGTAGCCG
GCTTTCTCAGCCGGGTGCGCAACTTCCTGCTGGGCCGCACCCACAAGACG
GCCCATCGCTTCGCGGACATGGTCTCTCCGCGCACTCAGCCGCCCCCAAA
CATCCCTAGTGGTCCTACCCAGAGTCTGTTCGCCAACTACTACTACACCA
GGGATCCTCGGCGCTTGGTGAAGCCCTTCGTCGACGTGGTGCAGGAGCAC
AAGAAGATGCTCACCGCCAAGGTGAAGGAGGAGGAAGCAGCCAAAAAGGC
TCAGGCCAAGTCTGGAGATGCGCCGAAAGATGGTAGCCCCATTCCACCTG
TCGGGCCCAAGACTACTGATACAAATGAATGCGATGAAGGCAATTCCGGC
GCGAAGAAGCTCCCGACTCCAGGAAAGGTGCATTCTTGGGAGGGGCCACA
TTAAAAGCTTTCTAGACCAT
BS14343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:34:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6914-RA | 438 | CG6914-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6914-RA | 758 | CG6914-RA | 71..508 | 17..454 | 2190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:34:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22606439..22606876 | 17..454 | 2190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:34:42 has no hits.
BS14343.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:14 Download gff for
BS14343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-RA | 1..438 | 17..454 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:25 Download gff for
BS14343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-RA | 63..515 | 10..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:00 Download gff for
BS14343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-RA | 71..506 | 17..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:14 Download gff for
BS14343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-RA | 63..515 | 10..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:57 Download gff for
BS14343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6914-RA | 71..506 | 17..452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:57 Download gff for
BS14343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22606439..22606874 | 17..452 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:00 Download gff for
BS14343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22599539..22599974 | 17..452 | 100 | | Plus |
BS14343.pep Sequence
Translation from 16 to 453
> BS14343.pep
MPPKPKHRDVAGFLSRVRNFLLGRTHKTAHRFADMVSPRTQPPPNIPSGP
TQSLFANYYYTRDPRRLVKPFVDVVQEHKKMLTAKVKEEEAAKKAQAKSG
DAPKDGSPIPPVGPKTTDTNECDEGNSGAKKLPTPGKVHSWEGPH*
BS14343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6914-PA | 145 | CG6914-PA | 1..145 | 1..145 | 787 | 100 | Plus |
CG3621-PB | 103 | CG3621-PB | 6..103 | 8..142 | 215 | 40 | Plus |
CG3621-PA | 103 | CG3621-PA | 6..103 | 8..142 | 215 | 40 | Plus |