Clone Sequence Records
BS14348.3prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS14348.3prime
ATGGTCTAGAAAGCTTTTACTTGTGGTTGTAGTTTTTGTGCACCTCGGGC
GAGATGTTGTACACGTACTGCAGGATCTCCAGGATGAACGGGTCCTTGCG
GGTCTGGATGGCCCGGTCCATGTCGGCCAGCTTAACGCGGATATCCGCAT
CGATCTTGGCCGCCACGCCCTCGCGACTTCCCATGTGCTTGGCCTCGAAC
TCCTTGAAGGCGCGCTCGCGCTCCTGGCGGAACTTCTCGATCTCCTCGGT
AGCCTCGTCCTTGGCTTGCTTCAACCTCCTTGCCTTGCGTTTACGAGCCT
CGGCGACCTTCTCGGCTGCCTTTTTCTCGGCAGCGAGCAACTGCTGGATT
CCCTGCGTCTGGCTGGCCATGTCGACTGATAACT
BS14348.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6213-PA | 354 | Vha13-RA | 1..354 | 370..17 | 1745 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-RB | 943 | CG6213-RB | 100..454 | 370..16 | 1760 | 99.7 | Minus |
Vha13-RA | 703 | CG6213-RA | 100..454 | 370..16 | 1760 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19643507..19643680 | 16..189 | 855 | 99.4 | Plus |
3R | 32079331 | 3R | 19643738..19643838 | 188..288 | 505 | 100 | Plus |
3R | 32079331 | 3R | 19644201..19644287 | 284..370 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:06:32 has no hits.
BS14348.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:32 Download gff for
BS14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6213-PA | 1..354 | 17..370 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:58 Download gff for
BS14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..454 | 16..370 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:06 Download gff for
BS14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..454 | 16..370 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:06 Download gff for
BS14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19644206..19644287 | 289..370 | 100 | | Plus |
3R | 19643507..19643678 | 16..187 | 99 | <- | Plus |
3R | 19643738..19643838 | 188..288 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:58 Download gff for
BS14348.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15469229..15469400 | 16..187 | 99 | <- | Plus |
arm_3R | 15469460..15469560 | 188..288 | 100 | <- | Plus |
arm_3R | 15469928..15470009 | 289..370 | 100 | | Plus |
BS14348.5prime Sequence
384 bp (384 high quality bases) assembled on 2006-10-13
> BS14348.5prime
GAAGTTATCAGTCGACATGGCCAGCCAGACGCAGGGAATCCAGCAGTTGC
TCGCTGCCGAGAAAAAGGCAGCCGAGAAGGTCGCCGAGGCTCGTAAACGC
AAGGCAAGGAGGTTGAAGCAAGCCAAGGACGAGGCTACCGAGGAGATCGA
GAAGTTCCGCCAGGAGCGCGAGCGCGCCTTCAAGGAGTTCGAGGCCAAGC
ACATGGGAAGTCGCGAGGGCGTGGCGGCCAAGATCGATGCGGATATCCGC
GTTAAGCTGGCCGACATGGACCGGGCCATCCAGACCCGCAAGGACCCGTT
CATCCTGGAGATCCTGCAGTACGTGTACAACATCTCGCCCGAGGTGCACA
AAAACTACAACCACAAGTAAAAGCTTTCTAGACC
BS14348.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6213-PA | 354 | Vha13-RA | 1..354 | 17..370 | 1745 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-RB | 943 | CG6213-RB | 100..454 | 17..371 | 1760 | 99.7 | Plus |
Vha13-RA | 703 | CG6213-RA | 100..454 | 17..371 | 1760 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19643507..19643680 | 371..198 | 855 | 99.4 | Minus |
3R | 32079331 | 3R | 19643738..19643838 | 199..99 | 505 | 100 | Minus |
3R | 32079331 | 3R | 19644201..19644287 | 103..17 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:50:02 has no hits.
BS14348.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:32 Download gff for
BS14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6213-PA | 1..354 | 17..370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:57 Download gff for
BS14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..454 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:36 Download gff for
BS14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..454 | 17..371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:36 Download gff for
BS14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19643507..19643678 | 200..371 | 99 | <- | Minus |
3R | 19643738..19643838 | 99..199 | 100 | <- | Minus |
3R | 19644206..19644287 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:57 Download gff for
BS14348.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15469229..15469400 | 200..371 | 99 | <- | Minus |
arm_3R | 15469460..15469560 | 99..199 | 100 | <- | Minus |
arm_3R | 15469928..15470009 | 17..98 | 100 | | Minus |
BS14348.complete Sequence
386 bp assembled on 2006-11-01
GenBank Submission: FJ637639
> BS14348.complete
GAAGTTATCAGTCGACATGGCCAGCCAGACGCAGGGAATCCAGCAGTTGC
TCGCTGCCGAGAAAAAGGCAGCCGAGAAGGTCGCCGAGGCTCGTAAACGC
AAGGCAAGGAGGTTGAAGCAAGCCAAGGACGAGGCTACCGAGGAGATCGA
GAAGTTCCGCCAGGAGCGCGAGCGCGCCTTCAAGGAGTTCGAGGCCAAGC
ACATGGGAAGTCGCGAGGGCGTGGCGGCCAAGATCGATGCGGATATCCGC
GTTAAGCTGGCCGACATGGACCGGGCCATCCAGACCCGCAAGGACCCGTT
CATCCTGGAGATCCTGCAGTACGTGTACAACATCTCGCCCGAGGTGCACA
AAAACTACAACCACAAGTAAAAGCTTTCTAGACCAT
BS14348.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-RB | 354 | CG6213-PB | 1..354 | 17..370 | 1755 | 99.7 | Plus |
Vha13-RA | 354 | CG6213-PA | 1..354 | 17..370 | 1755 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-RB | 943 | CG6213-RB | 100..454 | 17..371 | 1760 | 99.7 | Plus |
Vha13-RA | 703 | CG6213-RA | 100..454 | 17..371 | 1760 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19643507..19643680 | 371..198 | 855 | 99.4 | Minus |
3R | 32079331 | 3R | 19643738..19643838 | 199..99 | 505 | 100 | Minus |
3R | 32079331 | 3R | 19644201..19644287 | 103..17 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:03:22 has no hits.
BS14348.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:15 Download gff for
BS14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 1..354 | 17..370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:26 Download gff for
BS14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 126..480 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:38 Download gff for
BS14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..451 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:15 Download gff for
BS14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 126..480 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:21 Download gff for
BS14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha13-RA | 100..451 | 17..368 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:21 Download gff for
BS14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19643510..19643678 | 200..368 | 99 | <- | Minus |
3R | 19643738..19643838 | 99..199 | 100 | <- | Minus |
3R | 19644206..19644287 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:38 Download gff for
BS14348.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 15469232..15469400 | 200..368 | 99 | <- | Minus |
arm_3R | 15469460..15469560 | 99..199 | 100 | <- | Minus |
arm_3R | 15469928..15470009 | 17..98 | 100 | | Minus |
BS14348.pep Sequence
Translation from 16 to 369
> BS14348.pep
MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQE
RERAFKEFEAKHMGSREGVAAKIDADIRVKLADMDRAIQTRKDPFILEIL
QYVYNISPEVHKNYNHK*
BS14348.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha13-PB | 117 | CG6213-PB | 1..117 | 1..117 | 581 | 100 | Plus |
Vha13-PA | 117 | CG6213-PA | 1..117 | 1..117 | 581 | 100 | Plus |