Clone BS14348 Report

Search the DGRC for BS14348

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptVha13-RA
Protein status:BS14348.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14348.3prime Sequence

384 bp (384 high quality bases) assembled on 2006-10-13

> BS14348.3prime
ATGGTCTAGAAAGCTTTTACTTGTGGTTGTAGTTTTTGTGCACCTCGGGC
GAGATGTTGTACACGTACTGCAGGATCTCCAGGATGAACGGGTCCTTGCG
GGTCTGGATGGCCCGGTCCATGTCGGCCAGCTTAACGCGGATATCCGCAT
CGATCTTGGCCGCCACGCCCTCGCGACTTCCCATGTGCTTGGCCTCGAAC
TCCTTGAAGGCGCGCTCGCGCTCCTGGCGGAACTTCTCGATCTCCTCGGT
AGCCTCGTCCTTGGCTTGCTTCAACCTCCTTGCCTTGCGTTTACGAGCCT
CGGCGACCTTCTCGGCTGCCTTTTTCTCGGCAGCGAGCAACTGCTGGATT
CCCTGCGTCTGGCTGGCCATGTCGACTGATAACT

BS14348.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG6213-PA 354 Vha13-RA 1..354 370..17 1745 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
Vha13-RB 943 CG6213-RB 100..454 370..16 1760 99.7 Minus
Vha13-RA 703 CG6213-RA 100..454 370..16 1760 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19643507..19643680 16..189 855 99.4 Plus
3R 32079331 3R 19643738..19643838 188..288 505 100 Plus
3R 32079331 3R 19644201..19644287 284..370 420 98.9 Plus
Blast to na_te.dros performed on 2015-02-11 09:06:32 has no hits.

BS14348.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:32 Download gff for BS14348.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6213-PA 1..354 17..370 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:58 Download gff for BS14348.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha13-RA 100..454 16..370 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:51:06 Download gff for BS14348.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha13-RA 100..454 16..370 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:51:06 Download gff for BS14348.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 19644206..19644287 289..370 100   Plus
3R 19643507..19643678 16..187 99 <- Plus
3R 19643738..19643838 188..288 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:58 Download gff for BS14348.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15469229..15469400 16..187 99 <- Plus
arm_3R 15469460..15469560 188..288 100 <- Plus
arm_3R 15469928..15470009 289..370 100   Plus

BS14348.5prime Sequence

384 bp (384 high quality bases) assembled on 2006-10-13

> BS14348.5prime
GAAGTTATCAGTCGACATGGCCAGCCAGACGCAGGGAATCCAGCAGTTGC
TCGCTGCCGAGAAAAAGGCAGCCGAGAAGGTCGCCGAGGCTCGTAAACGC
AAGGCAAGGAGGTTGAAGCAAGCCAAGGACGAGGCTACCGAGGAGATCGA
GAAGTTCCGCCAGGAGCGCGAGCGCGCCTTCAAGGAGTTCGAGGCCAAGC
ACATGGGAAGTCGCGAGGGCGTGGCGGCCAAGATCGATGCGGATATCCGC
GTTAAGCTGGCCGACATGGACCGGGCCATCCAGACCCGCAAGGACCCGTT
CATCCTGGAGATCCTGCAGTACGTGTACAACATCTCGCCCGAGGTGCACA
AAAACTACAACCACAAGTAAAAGCTTTCTAGACC

BS14348.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6213-PA 354 Vha13-RA 1..354 17..370 1745 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Vha13-RB 943 CG6213-RB 100..454 17..371 1760 99.7 Plus
Vha13-RA 703 CG6213-RA 100..454 17..371 1760 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19643507..19643680 371..198 855 99.4 Minus
3R 32079331 3R 19643738..19643838 199..99 505 100 Minus
3R 32079331 3R 19644201..19644287 103..17 420 98.9 Minus
Blast to na_te.dros performed on 2015-02-02 17:50:02 has no hits.

BS14348.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:32 Download gff for BS14348.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6213-PA 1..354 17..370 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:57 Download gff for BS14348.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha13-RA 100..454 17..371 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:36 Download gff for BS14348.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha13-RA 100..454 17..371 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:36 Download gff for BS14348.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 19643507..19643678 200..371 99 <- Minus
3R 19643738..19643838 99..199 100 <- Minus
3R 19644206..19644287 17..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:57 Download gff for BS14348.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15469229..15469400 200..371 99 <- Minus
arm_3R 15469460..15469560 99..199 100 <- Minus
arm_3R 15469928..15470009 17..98 100   Minus

BS14348.complete Sequence

386 bp assembled on 2006-11-01

GenBank Submission: FJ637639

> BS14348.complete
GAAGTTATCAGTCGACATGGCCAGCCAGACGCAGGGAATCCAGCAGTTGC
TCGCTGCCGAGAAAAAGGCAGCCGAGAAGGTCGCCGAGGCTCGTAAACGC
AAGGCAAGGAGGTTGAAGCAAGCCAAGGACGAGGCTACCGAGGAGATCGA
GAAGTTCCGCCAGGAGCGCGAGCGCGCCTTCAAGGAGTTCGAGGCCAAGC
ACATGGGAAGTCGCGAGGGCGTGGCGGCCAAGATCGATGCGGATATCCGC
GTTAAGCTGGCCGACATGGACCGGGCCATCCAGACCCGCAAGGACCCGTT
CATCCTGGAGATCCTGCAGTACGTGTACAACATCTCGCCCGAGGTGCACA
AAAACTACAACCACAAGTAAAAGCTTTCTAGACCAT

BS14348.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Vha13-RB 354 CG6213-PB 1..354 17..370 1755 99.7 Plus
Vha13-RA 354 CG6213-PA 1..354 17..370 1755 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Vha13-RB 943 CG6213-RB 100..454 17..371 1760 99.7 Plus
Vha13-RA 703 CG6213-RA 100..454 17..371 1760 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19643507..19643680 371..198 855 99.4 Minus
3R 32079331 3R 19643738..19643838 199..99 505 100 Minus
3R 32079331 3R 19644201..19644287 103..17 420 98.9 Minus
Blast to na_te.dros performed on 2014-11-28 01:03:22 has no hits.

BS14348.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:15 Download gff for BS14348.complete
Subject Subject Range Query Range Percent Splice Strand
Vha13-RA 1..354 17..370 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:26 Download gff for BS14348.complete
Subject Subject Range Query Range Percent Splice Strand
Vha13-RA 126..480 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:37:38 Download gff for BS14348.complete
Subject Subject Range Query Range Percent Splice Strand
Vha13-RA 100..451 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:15 Download gff for BS14348.complete
Subject Subject Range Query Range Percent Splice Strand
Vha13-RA 126..480 17..371 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:21 Download gff for BS14348.complete
Subject Subject Range Query Range Percent Splice Strand
Vha13-RA 100..451 17..368 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:21 Download gff for BS14348.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19643510..19643678 200..368 99 <- Minus
3R 19643738..19643838 99..199 100 <- Minus
3R 19644206..19644287 17..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:37:38 Download gff for BS14348.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15469232..15469400 200..368 99 <- Minus
arm_3R 15469460..15469560 99..199 100 <- Minus
arm_3R 15469928..15470009 17..98 100   Minus

BS14348.pep Sequence

Translation from 16 to 369

> BS14348.pep
MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQE
RERAFKEFEAKHMGSREGVAAKIDADIRVKLADMDRAIQTRKDPFILEIL
QYVYNISPEVHKNYNHK*

BS14348.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:19
Subject Length Description Subject Range Query Range Score Percent Strand
Vha13-PB 117 CG6213-PB 1..117 1..117 581 100 Plus
Vha13-PA 117 CG6213-PA 1..117 1..117 581 100 Plus