Clone Sequence Records
BS14349.3prime Sequence
519 bp (491 high quality bases) assembled on 2006-10-13
> BS14349.3prime
ATGGTCTAGAAAGCTTTTATCCACCGTACTTAAACTTCTCGCAGGCAAAG
AGTGGCGACACGTAAAATGCCCGCAGGATGCAAACATCCTCTCCTATGCC
GATGACCACGTTATCCTTATCCTCTTTGCCCACCTCCAGGGTAACTACAA
AGTCTCCAACCTCCAAGCAGCCCTTCTTCCTCATAAAGTCCACTCCAAAC
TCAATCGGACTGTAGCTGCACTCGTTGAGATCCTTGGTGTAAAGAACCGG
GTGCATGTTACGGCGCAAATGAAGCGCACGAGCGAGCTCCACCTTGCAGG
TAATGGTTTCCGCATCATCTGTCTCCTCCAGCGGCACCATAACATATACT
GGGCAATAGATCTCAATGCGCGAAAGGGCCACGCTGGCGGTCTCGCAAGT
GGTGAACAAAAATATGGCTTGACACTCAATCGAGCTAATTGTGCGGATAA
TAAAATTCACAATGGGTCTGGTATGAGGTTAGGATGCTCTTCAGTACCAT
CTTATTCTGGACCGCGCCA
BS14349.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12229-PA | 1716 | CG12229-RA | 1215..1716 | 519..17 | 2400 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12229-RA | 1960 | CG12229-RA | 1399..1900 | 519..17 | 2445 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17434532..17435033 | 17..519 | 2420 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:22:35 has no hits.
BS14349.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:33 Download gff for
BS14349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12229-PA | 1216..1716 | 17..518 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:11:05 Download gff for
BS14349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12229-RA | 1400..1904 | 10..518 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:13:20 Download gff for
BS14349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12229-RA | 1400..1904 | 10..518 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:13:20 Download gff for
BS14349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17434528..17435032 | 10..518 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:11:05 Download gff for
BS14349.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17427628..17428132 | 10..518 | 98 | | Plus |
BS14349.5prime Sequence
495 bp (456 high quality bases) assembled on 2006-10-13
> BS14349.5prime
GAAGTTATCAGTCGACATGCCGATCAACCAGAAAGAAGTAACGCCGCAAC
TAGACAGTCAGACAGGTGAGGATCAGGGGGAGGAGGAGGAGCAGCCGGAA
GACGAGAATCGTCTGGAGAAGTTTACGGTGCGTCTTAATGGACAACATGA
CCTGGAGCAGCGTTTAAAGGATTTCAAAGCGGCATGCGAGGCTCACGAGA
AGCACGCCAGACGGCGAAAACGGAAGAGATACTATCATTTGGGTCTTGTG
GCCAAGCTGGTGACGGAAACCACTCACGACGAGCTGCGACGTATGCTGGA
AAATGGAACCTACACCTTTCACGTGGATACGGTGGGCAACAAGCCCGATG
AACTGAAAGCCATTTTGGACACCATGAACATTGCGATATCGGCGCATTCT
GCAGAGAGGGAACTACGTCTGACAACTGGCTTGGCTCTGGAGATTAACGG
CTAGTGCTGTCTCGTTGGGAGACTGAGGAACAACTGCACCGGGAT
BS14349.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12229-PA | 1716 | CG12229-RA | 1..475 | 17..491 | 2325 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12229-RA | 1960 | CG12229-RA | 185..663 | 17..495 | 2350 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:12:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17435769..17436247 | 495..17 | 2350 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:12:47 has no hits.
BS14349.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:33 Download gff for
BS14349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12229-PA | 1..479 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 19:43:33 Download gff for
BS14349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12229-RA | 181..663 | 9..495 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:16:04 Download gff for
BS14349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12229-RA | 181..663 | 9..495 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:16:04 Download gff for
BS14349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17435769..17436251 | 9..495 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 19:43:33 Download gff for
BS14349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17428869..17429351 | 9..495 | 98 | | Minus |
BS14349.complete Sequence
1748 bp assembled on 2010-05-12
GenBank Submission: KX805291
> BS14349.complete
GAAGTTATCAGTCGACATGCCGATCAACCAGAAAGAAGTAACGCCGCAAC
TAGACAGTCAGACAGGTGAGGATCAGGGGGAGGAGGAGGAGCAGCCGGAA
GACGAGAATCGTCTGGAGAAGTTTACGGTGCGTCTTAATGGACAACATGA
CCTGGAGCAGCGTTTAAAGGATTTCAAAGCGGCATGCGAGGCTCACGAGA
AGCACGCCAGACGGCGAAAACGGAAGAGATACTATCATTTGGGTCTTGTG
GCCAAGCTGGTGACGGAAACCACTCACGACGAGCTGCGACGTATGCTGGA
AAATGGAACCTACACCTTTCACGTGGATACGGTGGGCAACAAGCCCGATG
AACTGAAAGCCATTTTGGACACCATGAACATTGCGATATCGGCGCATTCT
GCAGAGAGGGAACTACGTCTGACAACTGGCTTGGCTCTGGAGATTAACGG
CGAGTGCTGTCGCGTTGGGAGACTGAGGAACAACTGCACCGTGATGCTGG
CACGAGGTGGGGTGGTCACACTCACCACGGATGAGTCCTACCGCTACAAA
GGCTTTAAAGAAATAGTGTACGTAATCAATCTGCGGTGTTATCTCGCCTC
CGTTCAGTTGGGCGATATTGTGATGATCGGACGTGAAGTTAGAGGTAAGG
TGGTGAAGACCCTGCGGGAAGCACTAACCGTGATGATCATAGATGCCGGT
CTGGTAGCCTCCTACGACTTTATAGAGCTTCCTAGACAGTGCCACGCTCT
CGATCCGGACCTATATCCCGATCTGTACATGAAGGACCTTGAGATGGCCG
CGTCTTTGAATGCCAACTATGTGGTTCTGCCCAAGATACGATGCAAGAGC
TTTCTTCGTGCCGTGCGGCAGACCTTGAACTCGGACTTCAACCTTAAGTT
GATCGGAATGATAGATTTCGAGTATGTGCGAAGCAACATGCTTGATTTGC
TAGGCATCATAAAGCTTGTGGACTACATTTGGATACCCGACATGTTCAAC
GTAAACTGTTGCGTATATAACTACATTATGGAGGACGTGCTTCCGATTTC
GCAGTGCCAGAAGAAGCCAGTAATTGGCACTGTTCCGCTGGAGCGTTGCA
GTGATTTTAAGCGATTTGAGTTGCACGATTTCCTGTGGAAGGTCGACGCT
ATTCACATCCAAAAAAGTCCATGGTGCAACAAATATCCGCTGATAGTCAA
AAAGCTGATGCCCATAAAAGATTATCGTGTTGGCGCGGTCCAGAATAAGA
TGGTACTGAAGAGCATCCTAACCTCATACCAGACCATTGTGAATTTTATT
ATCCGCACAATTAGCTCGATTGAGTGTCAAGCCATATTTTTGTTCACCAC
TTGCGAGACCGCCAGCGTGGCCCTTTCGCGCATTGAGATCTATTGCCCAG
TATATGTTATGGTGCCGCTGGAGGAGACAGATGATGCGGAAACCATTACC
TGCAAGGTGGAGCTCGCTCGTGCGCTTCATTTGCGCCGTAACATGCACCC
GGTTCTTTACACCAAGGATCTCAACGAGTGCAGCTACAGTCCGATTGAGT
TTGGAGTGGACTTTATGAGGAAGAAGGGCTGCTTGGAGGTTGGAGACTTT
GTAGTTACCCTGGAGGTGGGCAAAGAGGATAAGGATAACGTGGTCATCGG
CATAGGAGAGGATGTTTGCATCCTGCGGGCATTTTACGTGTCGCCACTCT
TTGCCTGCGAGAAGTTTAAGTACGGTGGATAAAAGCTTTCTAGACCAT
BS14349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12229-RA | 1716 | CG12229-PA | 1..1716 | 17..1732 | 8490 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12229-RA | 1960 | CG12229-RA | 185..1900 | 17..1732 | 8490 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17434532..17436247 | 1732..17 | 8490 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:05:03 has no hits.
BS14349.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:12:01 Download gff for
BS14349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12229-RA | 185..1898 | 17..1730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:20 Download gff for
BS14349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12229-RA | 185..1898 | 17..1730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:20 Download gff for
BS14349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12229-RA | 185..1898 | 17..1730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:20 Download gff for
BS14349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17434534..17436247 | 17..1730 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:20 Download gff for
BS14349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17427634..17429347 | 17..1730 | 99 | | Minus |
BS14349.pep Sequence
Translation from 16 to 1731
> BS14349.pep
MPINQKEVTPQLDSQTGEDQGEEEEQPEDENRLEKFTVRLNGQHDLEQRL
KDFKAACEAHEKHARRRKRKRYYHLGLVAKLVTETTHDELRRMLENGTYT
FHVDTVGNKPDELKAILDTMNIAISAHSAERELRLTTGLALEINGECCRV
GRLRNNCTVMLARGGVVTLTTDESYRYKGFKEIVYVINLRCYLASVQLGD
IVMIGREVRGKVVKTLREALTVMIIDAGLVASYDFIELPRQCHALDPDLY
PDLYMKDLEMAASLNANYVVLPKIRCKSFLRAVRQTLNSDFNLKLIGMID
FEYVRSNMLDLLGIIKLVDYIWIPDMFNVNCCVYNYIMEDVLPISQCQKK
PVIGTVPLERCSDFKRFELHDFLWKVDAIHIQKSPWCNKYPLIVKKLMPI
KDYRVGAVQNKMVLKSILTSYQTIVNFIIRTISSIECQAIFLFTTCETAS
VALSRIEIYCPVYVMVPLEETDDAETITCKVELARALHLRRNMHPVLYTK
DLNECSYSPIEFGVDFMRKKGCLEVGDFVVTLEVGKEDKDNVVIGIGEDV
CILRAFYVSPLFACEKFKYGG*
BS14349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12229-PA | 571 | CG12229-PA | 1..571 | 1..571 | 2983 | 100 | Plus |
