Clone Sequence Records
BS14360.complete Sequence
2162 bp assembled on 2009-12-07
GenBank Submission: KX804397
> BS14360.complete
GAAGTTATCAGTCGACATGTGCGCCGCCGTCTGCGTGATGGTCACGGTGC
CCACGGAAGCCGAGGAACTGAAACTGTGCCCCAAGCCGCTGGTTGGCGCA
TCATATTGCTCCAGCTGCGGTGGATGTGTAAGGAGCAGGTGCACTGAGGA
ACCCAGTGGCGAGGTGTGCGAACGCTGTTGGCGCTTGAGTCAAATAGCCG
GGAGCAGTGTGCATAGAGATGCCGTTCCAATGGCCAATACTCTCCAATAC
AGCACTACGTCTGCACCTATGTCCCAGGGGAGGGCCCTGCAGCTGCTCAA
TCTTAAGGGGGATGCCTCTTTGGAGAAACTGCTACGGGCCATTGCCAAAG
AGCTGCGATTGGAGAACGTCTTTTGGACGCACGACATCAGCGGGAGGCAG
GTCCAGGCACGCTTCGACCTTCTGCAGGACGAGCGATACGAGAGACTGCT
GTGCACGTTGCAAGATTGGGGCGTCGGTGATCGACCCGGCACCCATGTGT
CTGCCCTAACCTGCCTGGAAACCCGGGCTAAGCCCTGCCTGCAGGTACCC
AGACAAGACCATGACAATTTCGTGGATCAGCATCAGGAACATGGAGAGGG
TCAGGGCCAGGGTCAGGGCCAGGCCCAGGGCCAGGGCTGGCAGAGCTTCA
TGGACTCGGTAAGATGCAGGCTGAATGTCAACCAGGTCGTGCGCCAAGTT
CGGCGGGATGCCACCCTAACCTTTGACTTCGTGGTGCTGCTTATTGCTGC
CGCTCTGCTATCGTGCGTGGGTCTTGTCGAGAATAGTTTTCTTTTTCTCT
CCAGCTCCATGCTGATTTCCCCTTTGATGGGCCCAATCATAGCGGCCATA
TTCGGTTCAGTGATCGGCGATCGGGACCTGCGATGGTTGGGTCTGAAGAA
CGAACTCCTGGGTATAGCTGCGTCTGTGGCTATTGGATTCTTCTTTGGGG
CCATGGTCTGTGGTTTCGGTCACTTTTTCGCGATTTCCAAGGGACTCACG
GAGGAAATCGTCTCACGATGCGACACGCATTCCCTTGCCATCGGAGTATG
CACAGCCTTGGCTTCGGGAGCTGCGGGCGCCATAGCGGTTTTGGGTGGCA
ATACGGGGTCTCTGGTGGGCGTGGCCATCTCAGCCTCCCTGCTGCCGCCT
GCTGTTAATGCCGGACTTCTGTGGGCCCTGGCCGTCGGAGTCCACGTACT
GCCGGACGACCATGAGCCCCTGGCCAGCATGGTGAAGCACAGGTCGTACT
CCTCTCAACTTTCCGTTGAGCTACTGGTTTGTGCAGCTGTCAGCATGGCC
CTCACCCTCCTTAACATAATTTGCGTTTGGCTGATGGGAACGGTTGTTTT
GAGGATTAAGGAAGTGGCTCCAGCGGTTCAGCGACACCAGAAGTTTTGGC
ATCATGACATCCGCACAGCACGCGAGGTGGCGCTAGATCCAGTCCTGCAG
AGTGCCATAGATCGCCTGGACAAGTCTCAACTGGATTCGGACGCGTCACC
TTACCAGCGCGCCTGGTCGCCAGGGCTAGATCGTCAGACCGCCTCGCACA
CAGGAATTGGAAGCTACGACATTAACCTGTCCTGCAGCAAGGATCAGCCG
AACAACTATCACACGGTGCATGGCTTCCAGGAGTTCTGCATCACGCTGCA
TCGACTTAAGTCTGCACATAAGGTCGCCCCACCACCGACTATAATGGAGC
TGTTTACGCGCGCGCCTCCAAACTCCGACCAGACCAATATTGGGGGCAGT
GACTTCAGCAGCTGCCGCAGTCTGCCGGACATCAGCAGCCATTCCCGTCT
CTGGCCACATAAACCACCCAGTGCTATGAGCATCCAAGGCCTGATCTTTG
GTGCAGCCAAGAGCGGGGAACCTGGACCCGCTGTCCCTATGGCAACAAGT
TCGAATAGGGAACGCGAGAAGATGAATGTCCACTGGCGGGAGGAGGAACT
GCAGGAGGACCTCGTCCTGAGAAGGGAAATCCTGAACAGCAGGGAGAGCA
GTCCGCTCAGAAGGCCCGGACAAGTTCTGATACCCCTGCCCAGGCTAGAA
GGCAATTTCCTGATGAATCGGCCTCTCAGCCTGTTGCCCTACGGCAGGTC
AGAGGGAGCGAGCCCCGGGGAAAAGCAAGACGAGTTCCAGGCTTAGAAGC
TTTCTAGACCAT
BS14360.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12446-RA | 2130 | CG12446-PA | 1..2130 | 17..2146 | 10650 | 100 | Plus |
| CG7384-RA | 1818 | CG7384-PA | 914..1107 | 990..1183 | 235 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12446-RA | 2644 | CG12446-RA | 134..2263 | 17..2146 | 10650 | 100 | Plus |
| CG7384-RA | 2261 | CG7384-RA | 1129..1322 | 990..1183 | 235 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22809673..22811802 | 2146..17 | 10650 | 100 | Minus |
| 2L | 23513712 | 2L | 10508855..10509048 | 1183..990 | 235 | 74.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:51:05 has no hits.
BS14360.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:11 Download gff for
BS14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-RA | 134..2263 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:32 Download gff for
BS14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-RA | 134..2263 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:58:22 Download gff for
BS14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-RA | 134..2263 | 17..2146 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:16 Download gff for
BS14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-RA | 134..2263 | 17..2146 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:16 Download gff for
BS14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22809673..22811802 | 17..2146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:32 Download gff for
BS14360.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22211509..22213638 | 17..2146 | 100 | | Minus |
BS14360.3prime Sequence
643 bp (585 high quality bases) assembled on 2006-10-13
> BS14360.3prime
ATGGTCTAGAAAGCTTCTAAGCCTGGAACTCGTCTTGCTTTTCCCCGGGG
CTCGCTCCCTCTGACCTGCCGTAGGGCAACAGGCTGAGAGGCCGATTCAT
CAGGAAATTGCCTTCTAGCCTGGGCAGGGGTATCAGAACTTGTCCGGGCC
TTCTGAGCGGACTGCTCTCCCTGCTGTTCAGGATTTCCCTTCTCAGGACG
AGGTCCTCCTGCAGTTCCTCCTCCCGCCAGTGGACATTCATCTTCTCGCG
TTCCCTATTCGAACTTGTTGCCATAGGGACAGCGGGTCCAGGTTCCCCGC
TCTTGGCTGCACCAAAGATCAGGCCTTGGATGCTCATAGCACTGGGTGGT
TTATGTGGCCAGAGACGGGAATGGCTGCTGATGTCCGGCAGACTGCGGCA
GCTGCTGAAGTCACTGCCCCCAATATTGGTCTGGTCGGAGTTTGGAGGCG
CGCGCGTAAACAGCTCCATTATAGTCGGTGGTGGGGCGACCTTATGTGCA
GACTTAAGTCGATGCAGCGTGATGCAGAACTCCTGGAAGCCATGCACCGT
GTGATAGTTGTTCGGCTGATCCTTGCTGCAGGACAGGTTAATGTCGTAGC
TTCCAATTCCTGTGTGCGAGGCGGTCTGACGATCTTACCCTGG
BS14360.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12446-PA | 2130 | CG12446-RA | 1512..2130 | 635..17 | 3095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:56:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12446-RA | 2644 | CG12446-RA | 1637..2263 | 643..17 | 3105 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22809673..22810299 | 17..643 | 3105 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:56:02 has no hits.
BS14360.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:40 Download gff for
BS14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-PA | 1504..2130 | 17..643 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:09:24 Download gff for
BS14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-RA | 1637..2263 | 17..643 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:53 Download gff for
BS14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-RA | 1637..2263 | 17..643 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:53 Download gff for
BS14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22809673..22810299 | 17..643 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:09:24 Download gff for
BS14360.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22211509..22212135 | 17..643 | 99 | | Plus |
BS14360.5prime Sequence
592 bp (551 high quality bases) assembled on 2006-10-13
> BS14360.5prime
GAAGTTATCAGTCGACATGTGCGCCGCCGTCTGCGTGATGGTCACGGTGC
CCACGGAAGCCGAGGAACTGAAACTGTGCCCCAAGCCGCTGGTTGGCGCA
TCATATTGCTCCAGCTGCGGTGGATGTGTAAGGAGCAGGTGCACTGAGGA
ACCCAGTGGCGAGGTGTGCGAACGCTGTTGGCGCTTGAGTCAAATAGCCG
GGAGCAGTGTGCATAGAGATGCCGTTCCAATGGCCAATACTCTCCAATAC
AGCACTACGTCTGCACCTATGTCCCAGGGGAGGGCCCTGCAGCTGCTCAA
TCTTAAGGGGGATGCCTCTTTGGAGAAACTGCTACGGGCCATTGCCAAAG
AGCTGCGATTGGAGAACGTCTTTTGGACGCACGACATCAGCGGGAGGCAG
GTCCAGGCACGCTTCGACCTTCTGCAGGACGAGCGATACGAGAGACTGCT
GTGCACGTTGCAAGATTGGGGCGTCGGTGATCGACCCGGCACCCATGTGT
CTGCCCTAACCTGCCTGGAAACCCGGGCTAAGCCCTGCCTGCAGGTACCC
AGACAAGACCATTGACATTTCGTGGATCAGCATCAGGAACAT
BS14360.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12446-PA | 2130 | CG12446-RA | 1..576 | 17..592 | 2805 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12446-RA | 2644 | CG12446-RA | 134..709 | 17..592 | 2835 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:46:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22811227..22811802 | 592..17 | 2820 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:46:51 has no hits.
BS14360.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:41 Download gff for
BS14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-PA | 1..576 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:52:38 Download gff for
BS14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-RA | 130..709 | 12..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:32:40 Download gff for
BS14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12446-RA | 130..709 | 12..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:32:40 Download gff for
BS14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22811227..22811806 | 12..592 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:52:38 Download gff for
BS14360.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 22213063..22213642 | 12..592 | 99 | | Minus |
BS14360.pep Sequence
Translation from 16 to 2145
> BS14360.pep
MCAAVCVMVTVPTEAEELKLCPKPLVGASYCSSCGGCVRSRCTEEPSGEV
CERCWRLSQIAGSSVHRDAVPMANTLQYSTTSAPMSQGRALQLLNLKGDA
SLEKLLRAIAKELRLENVFWTHDISGRQVQARFDLLQDERYERLLCTLQD
WGVGDRPGTHVSALTCLETRAKPCLQVPRQDHDNFVDQHQEHGEGQGQGQ
GQAQGQGWQSFMDSVRCRLNVNQVVRQVRRDATLTFDFVVLLIAAALLSC
VGLVENSFLFLSSSMLISPLMGPIIAAIFGSVIGDRDLRWLGLKNELLGI
AASVAIGFFFGAMVCGFGHFFAISKGLTEEIVSRCDTHSLAIGVCTALAS
GAAGAIAVLGGNTGSLVGVAISASLLPPAVNAGLLWALAVGVHVLPDDHE
PLASMVKHRSYSSQLSVELLVCAAVSMALTLLNIICVWLMGTVVLRIKEV
APAVQRHQKFWHHDIRTAREVALDPVLQSAIDRLDKSQLDSDASPYQRAW
SPGLDRQTASHTGIGSYDINLSCSKDQPNNYHTVHGFQEFCITLHRLKSA
HKVAPPPTIMELFTRAPPNSDQTNIGGSDFSSCRSLPDISSHSRLWPHKP
PSAMSIQGLIFGAAKSGEPGPAVPMATSSNREREKMNVHWREEELQEDLV
LRREILNSRESSPLRRPGQVLIPLPRLEGNFLMNRPLSLLPYGRSEGASP
GEKQDEFQA*
BS14360.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12446-PA | 709 | CG12446-PA | 1..709 | 1..709 | 3695 | 100 | Plus |
| CG7384-PA | 605 | CG7384-PA | 5..506 | 3..510 | 971 | 44 | Plus |
| CG34109-PC | 800 | CG34109-PC | 156..520 | 102..470 | 508 | 34.6 | Plus |
