Clone Sequence Records
BS14362.3prime Sequence
586 bp (544 high quality bases) assembled on 2006-10-13
> BS14362.3prime
ATGGTCTAGAAAGCTTCTAGGCGATGAAGGCGGCTGCCTTGGAGACGATG
CTACCACGACACACGGGGCAGGTGACGGAGATTTTCTGGGCACAGTCCTC
GCAGAGACACACATGACCACATGGCAGTAGGATAATCTCCTTGGGATTGG
TGGAGCACACCACGCAGAGTTGATCCTGGGACAGAGTGTGAGGACGACTC
CTCGCCCTCCGCTCCCGACGCTCCGTATCCAGGCGTTCGCGAATTTTGGC
CTCCTCCCGCTCCTGCTTTCGTTTTCGGTAGAGTTTCTTGGCAATGAAGG
CAACCAGGATGGCAGAGATGGTGCTGCACACAACCAGCTTGAGTATCGTC
GTTGTCTTGGCATCTTCGAACCGCTTAATAAGCGTGGACTTGGTGGCAGT
GGTCAGGAAGAGCGGTCCCTCATTGGAGGGCTGCATGCGCAGAGTATCGC
CATCCAACTCCAGTTCACCAATAGCGGTCAGGAAGCTGCCTTCTCTGAGC
ACCTCCTCCGTCGTTTGCAATCCCCTCTGACGGACGCCAGAGAAGAACCC
AACACATTGGTCGAAGAGGGACAGATTGGAGGGCTC
BS14362.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1134-PA | 1017 | CG1134-RA | 487..1017 | 547..17 | 2655 | 100 | Minus |
CG1134-PA | 1017 | CG1134-RA | 448..476 | 586..558 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mul1-RB | 1656 | CG1134-RB | 526..1095 | 586..17 | 2790 | 99.5 | Minus |
Mul1-RA | 1213 | CG1134-RA | 526..1095 | 586..17 | 2790 | 99.5 | Minus |
CG11594-RA | 2895 | CG11594-RA | 2655..2776 | 17..138 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4022046..4022287 | 586..345 | 1120 | 97.5 | Minus |
3L | 28110227 | 3L | 4022346..4022553 | 344..137 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 4022819..4022940 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:50:00 has no hits.
BS14362.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:43 Download gff for
BS14362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1134-PA | 448..1017 | 17..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:27 Download gff for
BS14362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mul1-RA | 526..1095 | 17..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:44 Download gff for
BS14362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mul1-RA | 526..1095 | 17..586 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:44 Download gff for
BS14362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4022046..4022287 | 345..586 | 98 | -> | Minus |
3L | 4022346..4022553 | 137..344 | 100 | -> | Minus |
3L | 4022821..4022940 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:27 Download gff for
BS14362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4022046..4022287 | 345..586 | 98 | -> | Minus |
arm_3L | 4022346..4022553 | 137..344 | 100 | -> | Minus |
arm_3L | 4022821..4022940 | 17..136 | 100 | | Minus |
BS14362.5prime Sequence
663 bp (520 high quality bases) assembled on 2006-10-13
> BS14362.5prime
GAAGTTATCAGTCGACATGGAATTTTTACACGAATCCGTTGCACTGGGCG
TGGATCTGCTAATACTTGGCCTGTGTGCGCGCGAGTACGTGCACTACAAG
CGAACTGCCAAGGTGCTGAAGGCGGCACCACAATACAACATCGATGGAGA
CCTAAAATCGGTGGTGGAGCGGCAGCGCGACAAGAAGATACCATATGCGG
TAATCCGGGGCACAGTGACGCCCATCGGGGTGCCACTGAGGAGCTCCCTG
GTGCCCAGTGTGAGTGGAGTGCTGCAGATTGTGAAGCTGCATGAGCACAG
GGTAACGCGCGGATTCGCCGGCTTCTGGACGGAACAACACAAGTTGCTGC
ACGAATCCGCCAACGAGATGCCCTTCGAGTTGCGTAACCAGAGCCATGGT
GTGGAGATTGTGGACGCCTTGAGTGCCGCCGTCTTGGACGTGGACGTGGT
CTACGACAACTACGAGCCCTCCAATCTGTCCCTCTTCGACCATGTGTTTG
GTTTCTTCTCTGGCGTCCGTCAGAGGGGATTGCAAACGACGGAGGAGGTG
CTCAGAGAAAGCAGCTTCCTGACCGCTATTGGTGAACTGGAGTTGGATGG
CGATACTCTGCCCATGCAGCCCTCCAATGAAGGGACGCTCTTCCTGACCA
CTGCCACCAAGTC
BS14362.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1134-PA | 1017 | CG1134-RA | 1..647 | 17..663 | 3110 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:33:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mul1-RB | 1656 | CG1134-RB | 79..725 | 17..663 | 3160 | 99.4 | Plus |
Mul1-RA | 1213 | CG1134-RA | 79..725 | 17..663 | 3160 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4021702..4022245 | 120..663 | 2645 | 99.1 | Plus |
3L | 28110227 | 3L | 4021535..4021640 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:33:22 has no hits.
BS14362.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:44 Download gff for
BS14362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1134-PA | 1..647 | 17..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:52 Download gff for
BS14362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mul1-RA | 73..725 | 9..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:25 Download gff for
BS14362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mul1-RA | 73..725 | 9..663 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:25 Download gff for
BS14362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4021530..4021639 | 13..121 | 97 | -> | Plus |
3L | 4021704..4022245 | 122..663 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:52 Download gff for
BS14362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4021530..4021639 | 13..121 | 97 | -> | Plus |
arm_3L | 4021704..4022245 | 122..663 | 99 | | Plus |
BS14362.complete Sequence
1049 bp assembled on 2006-11-01
GenBank Submission: FJ637640
> BS14362.complete
GAAGTTATCAGTCGACATGGAATTTTTACACGAATCCGTTGCACTGGGCG
TGGATCTGCTAATACTTGGCCTGTGTGCGCGCGAGTACGTGCACTACAAG
CGAACTGCCAAGGTGCTGAAGGCGGCACCACAATACAACATCGATGGAGA
CCTAAAATCGGTGGTGGAGCGGCAGCGCGACAAGAAGATACCATATGCGG
TAATCCGGGGCACAGTGACGCCCATCGGGGTGCCACTGAGGAGCTCCCTG
GTGCCCAGTGTGAGTGGAGTGCTGCAGATTGTGAAGCTGCATGAGCACAG
GGTAACGCGCGGATTCGCCGGCTTCTGGACGGAACAACACAAGTTGCTGC
ACGAATCCGCCAACGAGATGCCCTTCGAGTTGCGTAACCAGAGCCATGGT
GTGGAGATTGTGGACGCCTTGAGTGCCGCCGTCTTGGACGTGGACGTGGT
CTACGACAACTACGAGCCCTCCAATCTGTCCCTCTTCGACCATGTGTTTG
GTTTCTTCTCTGGCGTCCGTCAGAGGGGATTGCAAACGACGGAGGAGGTG
CTCAGAGAAGGCAGCTTCCTGACCGCTATTGGTGAACTGGAGTTGGATGG
CGATACTCTGCGCATGCAGCCCTCCAATGAGGGACCGCTCTTCCTGACCA
CTGCCACCAAGTCCACGCTTATTAAGCGGTTCGAAGATGCCAAGACAACG
ACGATACTCAAGCTGGTTGTGTGCAGCACCATCTCTGCCATCCTGGTTGC
CTTCATTGCCAAGAAACTCTACCGAAAACGAAAGCAGGAGCGGGAGGAGG
CCAAAATTCGCGAACGCCTGGATACGGAGCGTCGGGAGCGGAGGGCGAGG
AGTCGTCCTCACACTCTGTCCCAGGATCAACTCTGCGTGGTGTGCTCCAC
CAATCCCAAGGAGATTATCCTACTGCCATGTGGTCATGTGTGTCTCTGCG
AGGACTGTGCCCAGAAAATCTCCGTCACCTGCCCCGTGTGTCGTGGTAGC
ATCGTCTCCAAGGCAGCCGCCTTCATCGCCTAGAAGCTTTCTAGACCAT
BS14362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mul1-RB | 1017 | CG1134-PB | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Mul1-RA | 1017 | CG1134-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mul1-RB | 1656 | CG1134-RB | 79..1095 | 17..1033 | 5085 | 100 | Plus |
Mul1-RA | 1213 | CG1134-RA | 79..1095 | 17..1033 | 5085 | 100 | Plus |
CG11594-RA | 2895 | CG11594-RA | 2655..2776 | 1033..912 | 610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4021702..4022287 | 120..705 | 2930 | 100 | Plus |
3L | 28110227 | 3L | 4022346..4022553 | 706..913 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 4022819..4022940 | 912..1033 | 610 | 100 | Plus |
3L | 28110227 | 3L | 4021535..4021640 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:17:01 has no hits.
BS14362.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:18 Download gff for
BS14362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1134-RA | 1..1017 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:30 Download gff for
BS14362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1134-RA | 91..1113 | 9..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:50 Download gff for
BS14362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mul1-RA | 79..1095 | 17..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:18 Download gff for
BS14362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1134-RA | 91..1113 | 9..1033 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:29 Download gff for
BS14362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mul1-RA | 79..1095 | 17..1033 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:29 Download gff for
BS14362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4021535..4021639 | 17..121 | 100 | -> | Plus |
3L | 4021704..4022287 | 122..705 | 100 | -> | Plus |
3L | 4022346..4022553 | 706..913 | 100 | -> | Plus |
3L | 4022821..4022940 | 914..1033 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:50 Download gff for
BS14362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4021535..4021639 | 17..121 | 100 | -> | Plus |
arm_3L | 4021704..4022287 | 122..705 | 100 | -> | Plus |
arm_3L | 4022346..4022553 | 706..913 | 100 | -> | Plus |
arm_3L | 4022821..4022940 | 914..1033 | 100 | | Plus |
BS14362.pep Sequence
Translation from 16 to 1032
> BS14362.pep
MEFLHESVALGVDLLILGLCAREYVHYKRTAKVLKAAPQYNIDGDLKSVV
ERQRDKKIPYAVIRGTVTPIGVPLRSSLVPSVSGVLQIVKLHEHRVTRGF
AGFWTEQHKLLHESANEMPFELRNQSHGVEIVDALSAAVLDVDVVYDNYE
PSNLSLFDHVFGFFSGVRQRGLQTTEEVLREGSFLTAIGELELDGDTLRM
QPSNEGPLFLTTATKSTLIKRFEDAKTTTILKLVVCSTISAILVAFIAKK
LYRKRKQEREEAKIRERLDTERRERRARSRPHTLSQDQLCVVCSTNPKEI
ILLPCGHVCLCEDCAQKISVTCPVCRGSIVSKAAAFIA*
BS14362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mul1-PB | 338 | CG1134-PB | 1..338 | 1..338 | 1723 | 100 | Plus |
Mul1-PA | 338 | CG1134-PA | 1..338 | 1..338 | 1723 | 100 | Plus |