Clone Sequence Records
BS14363.3prime Sequence
563 bp (435 high quality bases) assembled on 2006-10-13
> BS14363.3prime
ATGGTCTAGAAAGCTTTTAGTCTCGATCCTCTTCTGACTGGCGTATTAGT
ACCTCTGCGGCCAGCTGCTCGTCCTTGTCGCAGGCCAGATAGGCCTGAAC
GGCCATCACACGTTCGAAACCCAGTGCCTCCAAACGCCCTACGGCGGCGG
TTTCTTCGGCGGTTAAAGTAATCTGTAAATGTTCAATCTCGTTCGGGGTG
CGACTTGCGCCGCCTGAAATCATGTTCATTAACTCCTCCTGGTTACGCTG
AAAGACTTCGAAGGTAGCCGGATCGGTTTCAGCCAGTCTGTTCATTAGTC
TGTGTATTAGTTCTGGATTCTGATTAATCATCTCACGCATCCGTGTAATG
TTAAGATCTGCCATTAATTGCTGCAATTGATCACTTGTCTGTACGCTCGG
GATTGCAGCTAATCCCTGCTCTGAAACAACCTCCTGAGGAATCCCATTAA
TCAAATACTCTATAGCCCTTTCCGGATGATTAAAGCTCGCCCGGAAGGCT
GAGCGTACCTCCTCTTCCCCATATCCCATTGACATGAGATCGCTCACCCA
CTGATCATTGGGA
BS14363.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10694-PA | 873 | CG10694-RA | 327..873 | 563..17 | 2685 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10694-RA | 968 | CG10694-RA | 385..931 | 563..17 | 2705 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24107775..24108321 | 563..17 | 2705 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:06:00 has no hits.
BS14363.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:44 Download gff for
BS14363.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-PA | 328..873 | 17..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:56 Download gff for
BS14363.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-RA | 386..942 | 9..562 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:32 Download gff for
BS14363.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-RA | 386..942 | 9..562 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:32 Download gff for
BS14363.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24107776..24108332 | 9..562 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:56 Download gff for
BS14363.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19933498..19934054 | 9..562 | 98 | | Minus |
BS14363.5prime Sequence
501 bp (465 high quality bases) assembled on 2006-10-13
> BS14363.5prime
GAAGTTATCAGTCGACATGAAGCTGTCTATACGCATGCTGGACCAACGCA
CCATCACTTTGGAGATGAACGAATCGCAGGAGGTGAGGGCTCTGAAGCAG
AAATTGGGCAATTTACCCGAAGTCGCCATGCCCGCGGAGAACCTTCAGCT
GATATACAGTGGCCGCATTATGGAGGATGCCATGCCCCTCAGTGAATATC
GTATAGCCGAGGACAAGATCATTGTGTTGATGGGTAAGAAGAAGGTTGAT
AAGAGCTCGCCAGAGGAGAAGGTTGCCCCGACACCACCGTTGGCCGCTGG
CCCAAATGTTTTGCGCACAGAGGATGTGGTGCCTTCACTAGCTCCCAATG
ATCAGTGGGTGAGCGATCTCATGTCAATGGGATATGGCGAAGAGGAGGTA
CGCTCAGCCCTCCGGGCGAGCTTTAATCATCCGGAAAGGGCTATAGAGTA
TTTGATTAATGGGATTCCTCAGGAGGTTGTTTCAGAGCAGGGATTAGCTG
C
BS14363.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10694-PA | 873 | CG10694-RA | 1..485 | 17..501 | 2425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10694-RA | 968 | CG10694-RA | 59..543 | 17..501 | 2425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24107449..24107933 | 17..501 | 2425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:06:55 has no hits.
BS14363.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:44 Download gff for
BS14363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-PA | 1..485 | 17..501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:12 Download gff for
BS14363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-RA | 59..543 | 17..501 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:52:08 Download gff for
BS14363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-RA | 59..543 | 17..501 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:52:08 Download gff for
BS14363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24107449..24107933 | 17..501 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:12 Download gff for
BS14363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19933171..19933655 | 17..501 | 100 | | Plus |
BS14363.complete Sequence
905 bp assembled on 2006-11-01
GenBank Submission: FJ637641
> BS14363.complete
GAAGTTATCAGTCGACATGAAGCTGTCTATACGCATGCTGGACCAACGCA
CCATCACTTTGGAGATGAACGAATCGCAGGAGGTGAGGGCTCTGAAGCAG
AAATTGGGCAATTTACCCGAAGTCGCCATGCCCGCGGAGAACCTTCAGCT
GATATACAGTGGCCGCATTATGGAGGATGCCATGCCCCTCAGTGAATATC
GTATAGCCGAGGACAAGATCATTGTGTTGATGGGTAAGAAGAAGGTTGAT
AAGAGCTCGCCAGAGGAGAAGGTTGCCCCGACACCACCGTTGGCCGCTGG
CCCAAATGTTTTGCGCACAGAGGATGTGGTGCCTTCACTAGCTCCCAATG
ATCAGTGGGTGAGCGATCTCATGTCAATGGGATATGGCGAAGAGGAGGTA
CGCTCAGCCCTCCGGGCGAGCTTTAATCATCCGGAAAGGGCTATAGAGTA
TTTGATTAATGGGATTCCTCAGGAGGTTGTTTCAGAGCAGGGATTAGCTG
CAATCCCGAGCGTACAGACAAGTGATCAATTGCAGCAATTAATGGCAGAT
CTTAACATTACACGGATGCGTGAGATGATTAATCAGAATCCAGAACTAAT
ACACAGACTAATGAACAGACTGGCTGAAACCGATCCGGCTACCTTCGAAG
TCTTTCAGCGTAACCAGGAGGAGTTAATGAACATGATTTCAGGCGGCGCA
AGTCGCACCCCGAACGAGATTGAACATTTACAGATTACTTTAACCGCCGA
AGAAACCGCCGCCGTAGGGCGTTTGGAGGCACTGGGTTTCGAACGTGTGA
TGGCCGTTCAGGCCTATCTGGCCTGCGACAAGGACGAGCAGCTGGCCGCA
GAGGTACTAATACGCCAGTCAGAAGAGGATCGAGACTAAAAGCTTTCTAG
ACCAT
BS14363.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10694-RA | 873 | CG10694-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10694-RA | 968 | CG10694-RA | 59..931 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24107449..24108321 | 17..889 | 4365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:45:20 has no hits.
BS14363.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:19 Download gff for
BS14363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-RA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:31 Download gff for
BS14363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-RA | 59..942 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:35:43 Download gff for
BS14363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-RA | 59..929 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:19 Download gff for
BS14363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-RA | 59..942 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:41:30 Download gff for
BS14363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10694-RA | 59..929 | 17..887 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:41:30 Download gff for
BS14363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24107449..24108319 | 17..887 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:35:43 Download gff for
BS14363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19933171..19934041 | 17..887 | 100 | | Plus |
BS14363.pep Sequence
Translation from 16 to 888
> BS14363.pep
MKLSIRMLDQRTITLEMNESQEVRALKQKLGNLPEVAMPAENLQLIYSGR
IMEDAMPLSEYRIAEDKIIVLMGKKKVDKSSPEEKVAPTPPLAAGPNVLR
TEDVVPSLAPNDQWVSDLMSMGYGEEEVRSALRASFNHPERAIEYLINGI
PQEVVSEQGLAAIPSVQTSDQLQQLMADLNITRMREMINQNPELIHRLMN
RLAETDPATFEVFQRNQEELMNMISGGASRTPNEIEHLQITLTAEETAAV
GRLEALGFERVMAVQAYLACDKDEQLAAEVLIRQSEEDRD*
BS14363.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10694-PA | 290 | CG10694-PA | 1..290 | 1..290 | 1444 | 100 | Plus |
| Rad23-PC | 414 | CG1836-PC | 1..414 | 1..288 | 293 | 24.9 | Plus |
| Rad23-PA | 414 | CG1836-PA | 1..414 | 1..288 | 293 | 24.9 | Plus |
| Rad23-PB | 343 | CG1836-PB | 89..343 | 112..288 | 248 | 27.8 | Plus |
