Clone Sequence Records
BS14367.3prime Sequence
528 bp (528 high quality bases) assembled on 2006-10-13
> BS14367.3prime
ATGGTCTAGAAAGCTTTTACGTCTCCATCATCATGGTCACAAAGCGAACG
TAGTCGATTTTCAGTTCCGTGTTGGCGTCGGCATCACGTATCATTTCCTC
GATCTCGTCCTCTTCCATTTCATCGCCATATTCAGTCATTATCTGACGGA
ACTCATTCTCGTGTATAAAGCCAGATCCATCTTTGTCGAAGACTTTGAAC
GCGAGGATAACTTCATCTTCGACAGTCAAATTCTCGTACCGTTTCGACAT
GATGTATAGGAAATCACTGAGATAAAGCTCGCCGGATCCATCCGTATCAA
TTTCGGTGATATAATCCTGTATCTCGTTTTCCGGCGGGTTGTGGGCCACG
GCTCGCAGGCAATCTCTCAATAACTTGATCGGAATGACCTTGGCATTATC
GTCGTCGAAGAGGGCGAAGGCCGCCTCACAATCCTTGAGCTGTTCATCAT
TCAGCGTGTGGGTATGAACTGTTCGTACCTCCGGAGGTGGACTACTGAAA
TCAAAGTCATCCATGTCGACTGATAACT
BS14367.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5024-PA | 498 | CG5024-RA | 1..498 | 514..17 | 2415 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5024-RB | 643 | CG5024-RB | 109..607 | 515..17 | 2450 | 99.4 | Minus |
| CG5024-RA | 680 | CG5024-RA | 109..607 | 515..17 | 2450 | 99.4 | Minus |
| Acam-RB | 1224 | CG17769-RB | 284..426 | 306..164 | 205 | 77.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:23:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25811204..25811702 | 515..17 | 2450 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25812194..25812336 | 306..164 | 205 | 76.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:23:13 has no hits.
BS14367.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:48 Download gff for
BS14367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-PA | 1..498 | 17..514 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:47 Download gff for
BS14367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 109..615 | 8..515 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:54 Download gff for
BS14367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 109..615 | 8..515 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:54 Download gff for
BS14367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25811204..25811710 | 8..515 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:47 Download gff for
BS14367.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21636926..21637432 | 8..515 | 98 | | Minus |
BS14367.5prime Sequence
528 bp (528 high quality bases) assembled on 2006-10-13
> BS14367.5prime
GAAGTTATCAGTCGACATGGATGACTTTGATTTCAGTAGTCCACCTCCGG
AGGTACGAACAGTTCATACCCACACGCTGAATGATGAACAGCTCAAGGAT
TGTGAGGCGGCCTTCGCCCTCTTCGACGACGATAATGCCAAGGTCATTCC
GATCAAGTTATTGAGAGATTGCCTGCGAGCCGTGGCCCACAACCCGCCGG
AAAACGAGATACAGGATTATATCACCGAAATTGATACGGATGGATCCGGC
GAGCTTTATCTCAGTGATTTCCTATACATCATGTCGAAACGGTACGAGAA
TTTGACTGTCGAAGATGAAGTTATCCTCGCGTTCAAAGTCTTCGACAAAG
ATGGATCTGGCTTTATACACGAGAATGAGTTCCGTCAGATAATGACTGAA
TATGGCGATGAAATGGAAGAGGACGAGATCGAGGAAATGATACGTGATGC
CGACGCCAACACGGAACTGAAAATCGACTACGTTCGCTTTGTGACCATGA
TGATGGAGACGTAAAAGCTTTCTAGACC
BS14367.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5024-PA | 498 | CG5024-RA | 1..498 | 17..514 | 2415 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:41:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5024-RB | 643 | CG5024-RB | 109..607 | 16..514 | 2450 | 99.4 | Plus |
| CG5024-RA | 680 | CG5024-RA | 109..607 | 16..514 | 2450 | 99.4 | Plus |
| Acam-RB | 1224 | CG17769-RB | 284..426 | 225..367 | 205 | 77.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25811204..25811702 | 16..514 | 2450 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25812194..25812336 | 225..367 | 205 | 76.2 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:41:34 has no hits.
BS14367.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:49 Download gff for
BS14367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-PA | 1..498 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:09 Download gff for
BS14367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 109..615 | 16..523 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:12 Download gff for
BS14367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 109..615 | 16..523 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:12 Download gff for
BS14367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25811204..25811710 | 16..523 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:09 Download gff for
BS14367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21636926..21637432 | 16..523 | 98 | | Plus |
BS14367.complete Sequence
530 bp assembled on 2006-11-01
GenBank Submission: FJ637642
> BS14367.complete
GAAGTTATCAGTCGACATGGATGACTTTGATTTCAGTAGTCCACCTCCGG
AGGTACGAACAGTTCATACCCACACGCTGAATGATGAACAGCTCAAGGAT
TGTGAGGCGGCCTTCGCCCTCTTCGACGACGATAATGCCAAGGTCATTCC
GATCAAGTTATTGAGAGATTGCCTGCGAGCCGTGGCCCACAACCCGCCGG
AAAACGAGATACAGGATTATATCACCGAAATTGATACGGATGGATCCGGC
GAGCTTTATCTCAGTGATTTCCTATACATCATGTCGAAACGGTACGAGAA
TTTGACTGTCGAAGATGAAGTTATCCTCGCGTTCAAAGTCTTCGACAAAG
ATGGATCTGGCTTTATACACGAGAATGAGTTCCGTCAGATAATGACTGAA
TATGGCGATGAAATGGAAGAGGACGAGATCGAGGAAATGATACGTGATGC
CGACGCCAACACGGAACTGAAAATCGACTACGTTCGCTTTGTGACCATGA
TGATGGAGACGTAAAAGCTTTCTAGACCAT
BS14367.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5024-RB | 498 | CG5024-PB | 1..498 | 17..514 | 2445 | 99.4 | Plus |
| CG5024-RA | 498 | CG5024-PA | 1..498 | 17..514 | 2445 | 99.4 | Plus |
| CG17770-RA | 495 | CG17770-PA | 206..348 | 225..367 | 205 | 76.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5024-RB | 643 | CG5024-RB | 109..607 | 16..514 | 2450 | 99.4 | Plus |
| CG5024-RA | 680 | CG5024-RA | 109..607 | 16..514 | 2450 | 99.4 | Plus |
| Acam-RB | 1224 | CG17769-RB | 284..426 | 225..367 | 205 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25811204..25811702 | 16..514 | 2450 | 99.4 | Plus |
| 3R | 32079331 | 3R | 25812194..25812336 | 225..367 | 205 | 76.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:38 has no hits.
BS14367.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:20 Download gff for
BS14367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 1..498 | 17..514 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:32 Download gff for
BS14367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 109..615 | 16..523 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:18 Download gff for
BS14367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 110..605 | 17..512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:20 Download gff for
BS14367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 109..615 | 16..523 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:43 Download gff for
BS14367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5024-RA | 110..605 | 17..512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:43 Download gff for
BS14367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25811205..25811700 | 17..512 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:18 Download gff for
BS14367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21636927..21637422 | 17..512 | 99 | | Plus |
BS14367.pep Sequence
Translation from 16 to 513
> BS14367.pep
MDDFDFSSPPPEVRTVHTHTLNDEQLKDCEAAFALFDDDNAKVIPIKLLR
DCLRAVAHNPPENEIQDYITEIDTDGSGELYLSDFLYIMSKRYENLTVED
EVILAFKVFDKDGSGFIHENEFRQIMTEYGDEMEEDEIEEMIRDADANTE
LKIDYVRFVTMMMET*
BS14367.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5024-PB | 165 | CG5024-PB | 1..165 | 1..165 | 864 | 100 | Plus |
| CG5024-PA | 165 | CG5024-PA | 1..165 | 1..165 | 864 | 100 | Plus |
| CG17770-PA | 164 | CG17770-PA | 2..164 | 3..165 | 516 | 58.9 | Plus |
| Cam-PD | 149 | CG8472-PD | 5..146 | 21..162 | 317 | 41.5 | Plus |
| Cam-PC | 149 | CG8472-PC | 5..146 | 21..162 | 317 | 41.5 | Plus |
