Clone Sequence Records
BS14371.complete Sequence
1472 bp assembled on 2009-12-07
GenBank Submission: KX801692
> BS14371.complete
GAAGTTATCAGTCGACATGCCGCCTAAAGGGAAAAAGGGCAAAAAAGGCA
AAAAATTGCCAGTGCTCATCGATGGCGTGGACACCTCGGCGATGACTCGC
GACCAGCTGGAGGCATTTGCCCTCCGGCTAAAAGCGGAAATGGATCGTGA
GCGGGAGGAGCGTAACTACTTCCAGTTGGAGCGGGACAAGATTCGCACTT
TCTGGGAGATCACGCGCCAGCAGCTGGATGAGACCCGCTACGAGCTGCAG
CAGAAGGACAAGGAGATCGAGGCCACGCAGGATCTGGCGGATATCGATAC
CAAGCATGTGATGCAGCAGATGAAGCATCTGCAGTTTGAGAACCACAATA
GGCTCGGTGAGGTTCGGGCTGAGGCGATGACCCAACTAAAGCTGGCGCAG
GAGCACCATGTTCTGCAGGAAAACGAGCTTCAGCGGGACAAGCGACAGTT
GCGCCGAATGCTGCGCGAAAGAATGGAGATGAGCGAGATGCAGCTGCGCC
AAATGGAGGCTCACTTCAATGAGAAACTGCTAGAGCAGCGCATCACCTTC
GAACGCGAGCGCAAGGACAACGAGATGCTGCACGAGGAGAAAATGATCGA
GCAGAAGGCCAAGCTAGACCTTTTCTACGGCACACAAATGTTCGAGGTAG
AGGAGCGAAAGAACCAGCAGATAAAGGACCTACAGGACCACCATGACCTA
GCCTTTAACGATATGAAGAACTATTACAACGATATCACGCTTAACAACCT
GGCGCTAATTGGCAGCATGAAGGAGCAGCTAGAGCATCTGCGCAAGCAGG
CCGAGAGATCCGATAGAATCGCCGCGGACACGGCAGCTGAGAATCGGCGA
CTGAAGGAGCCTTTGGAGCATGCCAATATCCAGTTGAACGAGTATCGCCG
CAAACTGGAGTTCTACGAGCGGGATAAGCAGCAATTGAGTCGCCTCAAGA
CGCGCAACACTCGGCTGGAAAAGAAGGTGAAGGGTCTCACTTGGGAGGCG
GAAACTCTGATTCTGCGCAACGACTCGCTGGTGGCAGAACGGGAGGGCCT
GAAGGAGCGTTTCAACGACGTGATCGTCGAGCTGCAGCAGAAGACAGGAC
TGAAGAATGTCCTTCTGGAGCGCAAGATTGCCGCATTGATGCGCGAGGAT
GAGAAGCGCAGCATTGTCCTACACGAAACGATTGCCACCTGCGCTCCCAA
TTTCGCCGAAAAGTTAACCAGCTTGGATGAACGGGTGGGCAATATCATCG
ATGAGAAGAACAAGATAATCCTTGACCTGCGCTATGAGGTAACCAAGGCG
CGAAAGGCACACGACGATCTACTGGAAACCTACGAGTGCAAGCTCAAGCA
GTATGGTGTGCCCACTGACGAGCTGGGCTTCAAGCCCATCAGGAATCGGG
ACCAACAGCAGCTGTACGTGTGCGGTCCTGCGGGAATAATCACCGAAAAT
AAGTAGAAGCTTTCTAGACCAT
BS14371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas8-RD | 1440 | CG14271-PD | 1..1440 | 17..1456 | 7050 | 99.3 | Plus |
| Gas8-RB | 1440 | CG14271-PB | 1..1440 | 17..1456 | 7050 | 99.3 | Plus |
| Gas8-RC | 1365 | CG14271-PC | 1..1365 | 92..1456 | 6675 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:58:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas8-RD | 2252 | CG14271-RD | 311..1750 | 17..1456 | 7050 | 99.3 | Plus |
| Gas8-RB | 1829 | CG14271-RB | 311..1750 | 17..1456 | 7050 | 99.3 | Plus |
| Gas8-RC | 1933 | CG14271-RC | 37..1431 | 62..1456 | 6825 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3491513..3492437 | 1456..532 | 4490 | 99 | Minus |
| X | 23542271 | X | 3492513..3492817 | 531..227 | 1525 | 100 | Minus |
| X | 23542271 | X | 3492879..3493050 | 232..61 | 830 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:58:23 has no hits.
BS14371.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:48 Download gff for
BS14371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas8-RB | 311..1750 | 17..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:34 Download gff for
BS14371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas8-RB | 311..1750 | 17..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:09:14 Download gff for
BS14371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas8-RB | 311..1750 | 17..1456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:58 Download gff for
BS14371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas8-RB | 311..1750 | 17..1456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:58 Download gff for
BS14371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3491513..3492437 | 532..1456 | 99 | <- | Minus |
| X | 3492513..3492816 | 228..531 | 100 | <- | Minus |
| X | 3492884..3493048 | 63..227 | 99 | <- | Minus |
| X | 3503389..3503433 | 17..62 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:34 Download gff for
BS14371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3386546..3386849 | 228..531 | 100 | <- | Minus |
| arm_X | 3386917..3387081 | 63..227 | 99 | <- | Minus |
| arm_X | 3385546..3386470 | 532..1456 | 99 | <- | Minus |
| arm_X | 3397422..3397466 | 17..62 | 97 | | Minus |
BS14371.3prime Sequence
623 bp (534 high quality bases) assembled on 2006-10-13
> BS14371.3prime
ATGGTCTAGAAAGCTTCTACTTATTTTCGGTGATTATTCCCGCAGGACCG
CACACGTACAGCTGCTGTTGGTCCCGATTCCTGATGGGCTTGAAGCCCAG
CTCGTCAGTGGGCACACCATACTGCTTGAGCTTGCACTCGTAGGTTTCCA
GTAGATCGTCGTGTGCCTTTCGCGCCTTGGTTACCTCATAGCGCAGGTCA
AGGATTATCTTGTTCTTCTCATCGATGATATTGCCCACCCGTTCATCCAA
GCTGGTTAACTTTTCGGCGAAATTGGGAGCGCAGGTGGCAATCGTTTCGT
GTAGGACAATGCTGCGCTTCTCATCCTCGCGCATCAATGCGGCAATCTTG
CGCTCCAGAAGGACATTCTTCAGTCCTGTCTTCTGCTGCAGCTCGACGAT
CACGTCGTTGAAACGCTCCTTCAGGCCCTCCCGTTCTGCCACCAGCGAGT
CGTTGCGCAGAATCAGAGTTTCCGCCTCCCAAGTGAGACCCTTCACCTTC
TTTTCCAGCCGAGTGTTGCGCGTCTTGAGGCGACTCANTTGCTGCTTATC
CCGCTCGTAGAACTCCAGTTTGCGGCGATACTCGTTCAACTGGATATTGG
CATGCTCCAAAAGCTCCTTCAGT
BS14371.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14271-PB | 1440 | Gas8-RB | 834..1440 | 623..17 | 2791 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas8-RD | 2252 | CG14271-RD | 1144..1750 | 623..17 | 2889 | 98.4 | Minus |
| Gas8-RC | 1933 | CG14271-RC | 825..1431 | 623..17 | 2889 | 98.4 | Minus |
| Gas8-RB | 1829 | CG14271-RB | 1144..1750 | 623..17 | 2889 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3491513..3492119 | 17..623 | 2889 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:09:26 has no hits.
BS14371.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:53 Download gff for
BS14371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14271-PB | 834..1440 | 17..623 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:42:04 Download gff for
BS14371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas8-RB | 1144..1758 | 8..623 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:14 Download gff for
BS14371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas8-RB | 1144..1758 | 8..623 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:14 Download gff for
BS14371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3491505..3492119 | 8..623 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:42:04 Download gff for
BS14371.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3385538..3386152 | 8..623 | 97 | | Plus |
BS14371.5prime Sequence
629 bp (546 high quality bases) assembled on 2006-10-13
> BS14371.5prime
GAAGTTATCAGTCGACATGCCGCCTAAAGGGAAAAAGGGCAAAAAAGGCA
AAAAATTGCCAGTGCTCATCGATGGCGTGGACACCTCGGCGATGACTCGC
GACCAGCTGGAGGCATTTGCCCTCCGGCTAAAAGCGGAAATGGATCGTGA
GCGGGAGGAGCGTAACTACTTCCAGTTGGAGCGGGACAAGATTCGCACTT
TCTGGGAGATCACGCGCCAGCAGCTGGATGAGACCCGCTACGAGCTGCAG
CAGAAGGACAAGGAGATCGAGGCCACGCAGGATCTGGCGGATATCGATAC
CAAGCATGTGATGCAGCAGATGAAGCATCTGCAGTTTGAGAACCACAATA
GGCTCGGTGAGGTTCGGGCTGAGGCGATGACCCAACTAAAGCTGGCGCAG
GAGCACCATGTTCTGCAGGAAAACGAGCTTCAGCGGGACAAGCGACAGTT
GCGCCGAATGCTGCGCGAAAGAATGGAGATGAGCGAGATGCAGCTGCGCC
AAATGGAGGCTCACTTCAATGAGAAACTGCTAGAGCAGCGCATCACCTTC
GAACGCGAGCGCAAGGAACACGAGATGCTGCACGAGGAGAAAATGATCGA
GCAGAAGGCCAAGCTAGACCTTTTCCACG
BS14371.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14271-PB | 1440 | Gas8-RB | 1..609 | 17..625 | 2970 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas8-RD | 2252 | CG14271-RD | 311..923 | 17..629 | 3005 | 99.3 | Plus |
| Gas8-RB | 1829 | CG14271-RB | 311..923 | 17..629 | 3005 | 99.3 | Plus |
| Gas8-RC | 1933 | CG14271-RC | 37..604 | 62..629 | 2780 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3492513..3492817 | 531..227 | 1525 | 100 | Minus |
| X | 23542271 | X | 3492879..3493050 | 232..61 | 830 | 98.8 | Minus |
| X | 23542271 | X | 3492340..3492437 | 629..532 | 445 | 96.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:10:18 has no hits.
BS14371.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:54 Download gff for
BS14371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14271-PB | 1..613 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:56:47 Download gff for
BS14371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas8-RB | 304..923 | 9..629 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:30:07 Download gff for
BS14371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gas8-RB | 304..923 | 9..629 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:30:07 Download gff for
BS14371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3492340..3492437 | 532..629 | 96 | <- | Minus |
| X | 3492513..3492816 | 228..531 | 100 | <- | Minus |
| X | 3492884..3493048 | 63..227 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:56:47 Download gff for
BS14371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3386373..3386470 | 532..629 | 96 | <- | Minus |
| arm_X | 3386546..3386849 | 228..531 | 100 | <- | Minus |
| arm_X | 3386917..3387081 | 63..227 | 99 | <- | Minus |
BS14371.pep Sequence
Translation from 16 to 1455
> BS14371.pep
MPPKGKKGKKGKKLPVLIDGVDTSAMTRDQLEAFALRLKAEMDREREERN
YFQLERDKIRTFWEITRQQLDETRYELQQKDKEIEATQDLADIDTKHVMQ
QMKHLQFENHNRLGEVRAEAMTQLKLAQEHHVLQENELQRDKRQLRRMLR
ERMEMSEMQLRQMEAHFNEKLLEQRITFERERKDNEMLHEEKMIEQKAKL
DLFYGTQMFEVEERKNQQIKDLQDHHDLAFNDMKNYYNDITLNNLALIGS
MKEQLEHLRKQAERSDRIAADTAAENRRLKEPLEHANIQLNEYRRKLEFY
ERDKQQLSRLKTRNTRLEKKVKGLTWEAETLILRNDSLVAEREGLKERFN
DVIVELQQKTGLKNVLLERKIAALMREDEKRSIVLHETIATCAPNFAEKL
TSLDERVGNIIDEKNKIILDLRYEVTKARKAHDDLLETYECKLKQYGVPT
DELGFKPIRNRDQQQLYVCGPAGIITENK*
BS14371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gas8-PD | 479 | CG14271-PD | 1..479 | 1..479 | 2445 | 100 | Plus |
| Gas8-PB | 479 | CG14271-PB | 1..479 | 1..479 | 2445 | 100 | Plus |
| Gas8-PC | 454 | CG14271-PC | 1..454 | 26..479 | 2315 | 100 | Plus |
| cana-PC | 1409 | CG33694-PC | 945..1319 | 37..417 | 170 | 22.5 | Plus |
| cana-PB | 1409 | CG33694-PB | 945..1319 | 37..417 | 170 | 22.5 | Plus |
