Clone Sequence Records
BS14372.3prime Sequence
471 bp (403 high quality bases) assembled on 2006-10-13
> BS14372.3prime
ATGGTCTAGAAAGCTTTTAAATCGCGTGCTTGAAGTACTCCTCCTTTCCG
GTTGCATCGGCCTTCATGGTCTTTGCTCCGGGACGCCAGTTGACCGGGCA
GACCTCTCCGAACTCATCGCTGAACTGGAAGGCCTGAACCAGACGCAGTG
CCTCATCCACACTGCGACCCACTCCCATGTCATTCACCGTGATCTGGCGA
ATGCGTCCCTCGCGATCGATGATGAAAAGGGCGCGTAGAGCCAATCCGGT
GTCCTCATCGAGAACTCCATAGTCCCTGGCTATCTTCATGTTCTTGTCGG
CCAACAATGGTATGTCCAACTCACCCAGACCTCCGTTCTTCCTGGGAGTA
TTCATCCAGGCGCAGTGCACAAAGTGACTATCAGTGGAACAGGCCAAGAC
TTCGCAGCCCACATTCCTGAATTCCGGAGCTCTATCGCTGAATGCCTGCA
ACTCCGTGGGGCAGACGTACG
BS14372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6888-PA | 591 | CG6888-RA | 137..591 | 471..17 | 2225 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6888-RA | 743 | CG6888-RA | 219..673 | 471..17 | 2245 | 99.6 | Minus |
Jafrac1-RE | 976 | CG1633-RE | 344..649 | 361..56 | 390 | 76.8 | Minus |
Jafrac1-RD | 1080 | CG1633-RD | 448..753 | 361..56 | 390 | 76.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15208062..15208516 | 471..17 | 2245 | 99.6 | Minus |
X | 23542271 | X | 13331362..13331667 | 361..56 | 390 | 75.2 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:06:27 has no hits.
BS14372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:54 Download gff for
BS14372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-PA | 137..591 | 17..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:06 Download gff for
BS14372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-RA | 219..683 | 7..471 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:39 Download gff for
BS14372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-RA | 219..683 | 7..471 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:39 Download gff for
BS14372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15208062..15208526 | 7..471 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:06 Download gff for
BS14372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15201162..15201626 | 7..471 | 98 | | Minus |
BS14372.5prime Sequence
435 bp (424 high quality bases) assembled on 2006-10-13
> BS14372.5prime
GAAGTTATCAGTCGACATGCGTATGCTCAATATTAACCAAGTGGCTCCTA
ATTTTACTACCAATGCGGTGGTATCCGGTGGTTATCGTAATTTTGCTCTT
ACGGATTTGCGTGGCAGATACGTCCTGTTGGTCTTTTATCCGGCTGACTT
TTCGTACGTCTGCCCCACGGAGTTGCAGGCATTCAGCGATAGAGCTCCGG
AATTCAGGAATGTGGGCTGCGAAGTCTTGGCCTGTTCCACTGATAGTCAC
TTTGTGCACTGCGCCTGGATGAATACTCCCAGGAAGAACGGAGGTCTGGG
TGAGTTGGACATACCATTGTTGGCCGACAAGAACATGAAGATAGCCAGGG
ACTATGGAGTTCTCGATGAGGACACCGGATTGGCTCTACGCGCCCTTTTC
ATCATCGATCGCGAGGGACGCATTCGCCAGATCAC
BS14372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6888-PA | 591 | CG6888-RA | 1..419 | 17..435 | 2070 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6888-RA | 743 | CG6888-RA | 83..501 | 17..435 | 2080 | 99.8 | Plus |
Jafrac1-RE | 976 | CG1633-RE | 344..490 | 263..409 | 210 | 77.9 | Plus |
Jafrac1-RD | 1080 | CG1633-RD | 448..594 | 263..409 | 210 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15207926..15208344 | 17..435 | 2080 | 99.8 | Plus |
X | 23542271 | X | 13331362..13331508 | 263..409 | 210 | 76.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:40:56 has no hits.
BS14372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:56 Download gff for
BS14372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-PA | 1..419 | 17..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:16 Download gff for
BS14372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-RA | 77..501 | 11..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:33 Download gff for
BS14372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-RA | 77..501 | 11..435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:33 Download gff for
BS14372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15207920..15208344 | 11..435 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:16 Download gff for
BS14372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15201020..15201444 | 11..435 | 99 | | Plus |
BS14372.complete Sequence
623 bp assembled on 2006-11-01
GenBank Submission: FJ637643
> BS14372.complete
GAAGTTATCAGTCGACATGCGTATGCTCAATATTAACCAAGTGGCTCCTA
ATTTTACTACCAATGCGGTGGTATCCGGTGGTTATCGTAATTTTGCTCTT
ACGGATTTGCGTGGCAGATACGTCCTGTTGGTCTTTTATCCGGCTGACTT
TTCGTACGTCTGCCCCACGGAGTTGCAGGCATTCAGCGATAGAGCTCCGG
AATTCAGGAATGTGGGCTGCGAAGTCTTGGCCTGTTCCACTGATAGTCAC
TTTGTGCACTGCGCCTGGATGAATACTCCCAGGAAGAACGGAGGTCTGGG
TGAGTTGGACATACCATTGTTGGCCGACAAGAACATGAAGATAGCCAGGG
ACTATGGAGTTCTCGATGAGGACACCGGATTGGCTCTACGCGCCCTTTTC
ATCATCGATCGCGAGGGACGCATTCGCCAGATCACGGTGAATGACATGGG
AGTGGGTCGCAGTGTGGATGAGGCACTGCGTCTGGTTCAGGCCTTCCAGT
TCAGCGATGAGTTCGGAGAGGTCTGCCCGGTCAACTGGCGTCCCGGAGCA
AAGACCATGAAGGCCGATGCAACCGGAAAGGAGGAGTACTTCAAGCACGC
GATTTAAAAGCTTTCTAGACCAT
BS14372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6888-RA | 591 | CG6888-PA | 1..591 | 17..607 | 2925 | 99.7 | Plus |
Jafrac1-RE | 585 | CG1633-PE | 241..546 | 263..568 | 390 | 75.2 | Plus |
Jafrac1-RD | 585 | CG1633-PD | 241..546 | 263..568 | 390 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6888-RA | 743 | CG6888-RA | 83..673 | 17..607 | 2925 | 99.7 | Plus |
Jafrac1-RE | 976 | CG1633-RE | 344..649 | 263..568 | 390 | 75.2 | Plus |
Jafrac1-RD | 1080 | CG1633-RD | 448..753 | 263..568 | 390 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15207926..15208516 | 17..607 | 2925 | 99.7 | Plus |
X | 23542271 | X | 13331362..13331667 | 263..568 | 390 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:01 has no hits.
BS14372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:22 Download gff for
BS14372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-RA | 1..591 | 17..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:35 Download gff for
BS14372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-RA | 77..683 | 11..617 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:53 Download gff for
BS14372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-RA | 83..671 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:23 Download gff for
BS14372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-RA | 77..683 | 11..617 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:13 Download gff for
BS14372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6888-RA | 83..671 | 17..605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:13 Download gff for
BS14372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15207926..15208514 | 17..605 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:53 Download gff for
BS14372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15201026..15201614 | 17..605 | 99 | | Plus |
BS14372.pep Sequence
Translation from 16 to 606
> BS14372.pep
MRMLNINQVAPNFTTNAVVSGGYRNFALTDLRGRYVLLVFYPADFSYVCP
TELQAFSDRAPEFRNVGCEVLACSTDSHFVHCAWMNTPRKNGGLGELDIP
LLADKNMKIARDYGVLDEDTGLALRALFIIDREGRIRQITVNDMGVGRSV
DEALRLVQAFQFSDEFGEVCPVNWRPGAKTMKADATGKEEYFKHAI*
BS14372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6888-PA | 196 | CG6888-PA | 1..196 | 1..196 | 1035 | 100 | Plus |
Jafrac1-PE | 194 | CG1633-PE | 1..191 | 3..193 | 665 | 61.8 | Plus |
Jafrac1-PD | 194 | CG1633-PD | 1..191 | 3..193 | 665 | 61.8 | Plus |
Jafrac1-PC | 194 | CG1633-PC | 1..191 | 3..193 | 665 | 61.8 | Plus |
Jafrac1-PA | 194 | CG1633-PA | 1..191 | 3..193 | 665 | 61.8 | Plus |