Clone BS14372 Report

Search the DGRC for BS14372

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG6888-RA
Protein status:BS14372.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14372.3prime Sequence

471 bp (403 high quality bases) assembled on 2006-10-13

> BS14372.3prime
ATGGTCTAGAAAGCTTTTAAATCGCGTGCTTGAAGTACTCCTCCTTTCCG
GTTGCATCGGCCTTCATGGTCTTTGCTCCGGGACGCCAGTTGACCGGGCA
GACCTCTCCGAACTCATCGCTGAACTGGAAGGCCTGAACCAGACGCAGTG
CCTCATCCACACTGCGACCCACTCCCATGTCATTCACCGTGATCTGGCGA
ATGCGTCCCTCGCGATCGATGATGAAAAGGGCGCGTAGAGCCAATCCGGT
GTCCTCATCGAGAACTCCATAGTCCCTGGCTATCTTCATGTTCTTGTCGG
CCAACAATGGTATGTCCAACTCACCCAGACCTCCGTTCTTCCTGGGAGTA
TTCATCCAGGCGCAGTGCACAAAGTGACTATCAGTGGAACAGGCCAAGAC
TTCGCAGCCCACATTCCTGAATTCCGGAGCTCTATCGCTGAATGCCTGCA
ACTCCGTGGGGCAGACGTACG

BS14372.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG6888-PA 591 CG6888-RA 137..591 471..17 2225 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6888-RA 743 CG6888-RA 219..673 471..17 2245 99.6 Minus
Jafrac1-RE 976 CG1633-RE 344..649 361..56 390 76.8 Minus
Jafrac1-RD 1080 CG1633-RD 448..753 361..56 390 76.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15208062..15208516 471..17 2245 99.6 Minus
X 23542271 X 13331362..13331667 361..56 390 75.2 Minus
Blast to na_te.dros performed on 2015-01-31 10:06:27 has no hits.

BS14372.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:54 Download gff for BS14372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6888-PA 137..591 17..471 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:06 Download gff for BS14372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6888-RA 219..683 7..471 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:39 Download gff for BS14372.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6888-RA 219..683 7..471 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:39 Download gff for BS14372.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15208062..15208526 7..471 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:06 Download gff for BS14372.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15201162..15201626 7..471 98   Minus

BS14372.5prime Sequence

435 bp (424 high quality bases) assembled on 2006-10-13

> BS14372.5prime
GAAGTTATCAGTCGACATGCGTATGCTCAATATTAACCAAGTGGCTCCTA
ATTTTACTACCAATGCGGTGGTATCCGGTGGTTATCGTAATTTTGCTCTT
ACGGATTTGCGTGGCAGATACGTCCTGTTGGTCTTTTATCCGGCTGACTT
TTCGTACGTCTGCCCCACGGAGTTGCAGGCATTCAGCGATAGAGCTCCGG
AATTCAGGAATGTGGGCTGCGAAGTCTTGGCCTGTTCCACTGATAGTCAC
TTTGTGCACTGCGCCTGGATGAATACTCCCAGGAAGAACGGAGGTCTGGG
TGAGTTGGACATACCATTGTTGGCCGACAAGAACATGAAGATAGCCAGGG
ACTATGGAGTTCTCGATGAGGACACCGGATTGGCTCTACGCGCCCTTTTC
ATCATCGATCGCGAGGGACGCATTCGCCAGATCAC

BS14372.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6888-PA 591 CG6888-RA 1..419 17..435 2070 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6888-RA 743 CG6888-RA 83..501 17..435 2080 99.8 Plus
Jafrac1-RE 976 CG1633-RE 344..490 263..409 210 77.9 Plus
Jafrac1-RD 1080 CG1633-RD 448..594 263..409 210 77.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15207926..15208344 17..435 2080 99.8 Plus
X 23542271 X 13331362..13331508 263..409 210 76.2 Plus
Blast to na_te.dros performed on 2015-02-12 17:40:56 has no hits.

BS14372.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:50:56 Download gff for BS14372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6888-PA 1..419 17..435 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:16 Download gff for BS14372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6888-RA 77..501 11..435 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:49:33 Download gff for BS14372.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6888-RA 77..501 11..435 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:49:33 Download gff for BS14372.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15207920..15208344 11..435 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:16 Download gff for BS14372.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15201020..15201444 11..435 99   Plus

BS14372.complete Sequence

623 bp assembled on 2006-11-01

GenBank Submission: FJ637643

> BS14372.complete
GAAGTTATCAGTCGACATGCGTATGCTCAATATTAACCAAGTGGCTCCTA
ATTTTACTACCAATGCGGTGGTATCCGGTGGTTATCGTAATTTTGCTCTT
ACGGATTTGCGTGGCAGATACGTCCTGTTGGTCTTTTATCCGGCTGACTT
TTCGTACGTCTGCCCCACGGAGTTGCAGGCATTCAGCGATAGAGCTCCGG
AATTCAGGAATGTGGGCTGCGAAGTCTTGGCCTGTTCCACTGATAGTCAC
TTTGTGCACTGCGCCTGGATGAATACTCCCAGGAAGAACGGAGGTCTGGG
TGAGTTGGACATACCATTGTTGGCCGACAAGAACATGAAGATAGCCAGGG
ACTATGGAGTTCTCGATGAGGACACCGGATTGGCTCTACGCGCCCTTTTC
ATCATCGATCGCGAGGGACGCATTCGCCAGATCACGGTGAATGACATGGG
AGTGGGTCGCAGTGTGGATGAGGCACTGCGTCTGGTTCAGGCCTTCCAGT
TCAGCGATGAGTTCGGAGAGGTCTGCCCGGTCAACTGGCGTCCCGGAGCA
AAGACCATGAAGGCCGATGCAACCGGAAAGGAGGAGTACTTCAAGCACGC
GATTTAAAAGCTTTCTAGACCAT

BS14372.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6888-RA 591 CG6888-PA 1..591 17..607 2925 99.7 Plus
Jafrac1-RE 585 CG1633-PE 241..546 263..568 390 75.2 Plus
Jafrac1-RD 585 CG1633-PD 241..546 263..568 390 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6888-RA 743 CG6888-RA 83..673 17..607 2925 99.7 Plus
Jafrac1-RE 976 CG1633-RE 344..649 263..568 390 75.2 Plus
Jafrac1-RD 1080 CG1633-RD 448..753 263..568 390 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15207926..15208516 17..607 2925 99.7 Plus
X 23542271 X 13331362..13331667 263..568 390 75.2 Plus
Blast to na_te.dros performed on 2014-11-27 14:40:01 has no hits.

BS14372.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:22 Download gff for BS14372.complete
Subject Subject Range Query Range Percent Splice Strand
CG6888-RA 1..591 17..607 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:35 Download gff for BS14372.complete
Subject Subject Range Query Range Percent Splice Strand
CG6888-RA 77..683 11..617 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:53 Download gff for BS14372.complete
Subject Subject Range Query Range Percent Splice Strand
CG6888-RA 83..671 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:23 Download gff for BS14372.complete
Subject Subject Range Query Range Percent Splice Strand
CG6888-RA 77..683 11..617 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:13 Download gff for BS14372.complete
Subject Subject Range Query Range Percent Splice Strand
CG6888-RA 83..671 17..605 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:13 Download gff for BS14372.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15207926..15208514 17..605 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:53 Download gff for BS14372.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15201026..15201614 17..605 99   Plus

BS14372.pep Sequence

Translation from 16 to 606

> BS14372.pep
MRMLNINQVAPNFTTNAVVSGGYRNFALTDLRGRYVLLVFYPADFSYVCP
TELQAFSDRAPEFRNVGCEVLACSTDSHFVHCAWMNTPRKNGGLGELDIP
LLADKNMKIARDYGVLDEDTGLALRALFIIDREGRIRQITVNDMGVGRSV
DEALRLVQAFQFSDEFGEVCPVNWRPGAKTMKADATGKEEYFKHAI*

BS14372.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6888-PA 196 CG6888-PA 1..196 1..196 1035 100 Plus
Jafrac1-PE 194 CG1633-PE 1..191 3..193 665 61.8 Plus
Jafrac1-PD 194 CG1633-PD 1..191 3..193 665 61.8 Plus
Jafrac1-PC 194 CG1633-PC 1..191 3..193 665 61.8 Plus
Jafrac1-PA 194 CG1633-PA 1..191 3..193 665 61.8 Plus