Clone Sequence Records
BS14379.3prime Sequence
489 bp (461 high quality bases) assembled on 2006-10-13
> BS14379.3prime
ATGGTCTAGAAAGCTTTTAGATGGGGAGGTTGCCTCGCTTTGTGAAAGAA
CCTGGTGGCGCGGAAGGCAGCTGAGATTTTTTCAAAGACTCCATTCGTCC
ACCCGTCCGCACTAGATCGCTCCCCCCCTCACACTCCCCGTACTCCACGC
ACCGCACATATCCTTCGCAGTCGCATTCGTGGAATTCTTCGTCTTCCTCG
GAGTCCACGTCCAGTTGGCCGCCCGCCATTAGAGCCAGCTCGAAGTTACC
CTGTCTCCGCCGACTGTCCATGTCCAGAAGAATTTCTCCGTCCGCTCCGA
TTTCCATGTCACTGACCTCATAGACGTAGTCGTCCTCACTTAGCACATCC
AGATGCACGAGTCCGCCAAACATGGTGAGATGGGAAATACGACAGGAAGG
GTTCGTATTTTTGGCAGAGGTCATGATCGTATTATCCCGGGCAAGTCCAA
CGCTCTGAGTCCGATTCCTTCCTGGCAGGTGTCGCGGTC
BS14379.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11226-PA | 591 | CG11226-RA | 119..591 | 489..17 | 2365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11226-RA | 1103 | CG11226-RA | 197..669 | 489..17 | 2365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22837264..22837736 | 489..17 | 2365 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:42:56 has no hits.
BS14379.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:09 Download gff for
BS14379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-PA | 119..591 | 17..489 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:27 Download gff for
BS14379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-RA | 197..671 | 13..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:25 Download gff for
BS14379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-RA | 197..671 | 13..489 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:25 Download gff for
BS14379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22837264..22837738 | 13..489 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:27 Download gff for
BS14379.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22830364..22830838 | 13..489 | 99 | | Minus |
BS14379.5prime Sequence
559 bp (514 high quality bases) assembled on 2006-10-13
> BS14379.5prime
GAAGTTATCAGTCGACATGAGAGCCTCTTTTCTGATCAGTCGCAAGCAGC
CATGGATGGGGCAGCTGCTGCTCATGGCGAGAAACAAAGCCCTTACGCTC
CTGCTGAAGCTGTATAGGCGGACTCCCATCTTCAGACCGCGACACCTGCC
AGGAAGGAATCGGACTCAGAGCGTTGGACTTGCCCGGGATAATACGATCA
TGACCTCTGCCAAAAATACGAACCCTTCCTGTCGTATTTCCCATCTCACC
ATGTTTGGCGGACTCGTGCATCTGGATGTGCTAAGTGAGGACGACTACGT
CTATGAGGTCAGTGACATGGAAATCGGAGCGGACGGAGAAATTCTTCTGG
ACATGGACAGTCGGCGGAGACAGGGTAACTTCGAGCTGGCTCTAATGGCG
GGCGGCCAACTGGACGTGGACTCCGAGGAAGACGAAGAATTCCACGAATG
CGACTGCGAAGGATATGTGCGGTGCGTGGAGTACGGGGAGTGTGAGGGGG
GGAGCGATCTAGTGCGGACGGGTGGACGAATGGAGTCTTTGAAAAAATCT
CACCTGCCT
BS14379.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11226-PA | 591 | CG11226-RA | 1..543 | 17..559 | 2690 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11226-RA | 1103 | CG11226-RA | 79..621 | 17..559 | 2700 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:33:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22837146..22837688 | 17..559 | 2700 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:34:00 has no hits.
BS14379.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:10 Download gff for
BS14379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-PA | 1..543 | 17..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:00 Download gff for
BS14379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-RA | 70..621 | 10..559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:30 Download gff for
BS14379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-RA | 70..621 | 10..559 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:30 Download gff for
BS14379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22837137..22837688 | 10..559 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:00 Download gff for
BS14379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22830237..22830788 | 10..559 | 99 | | Plus |
BS14379.complete Sequence
623 bp assembled on 2006-11-01
GenBank Submission: FJ637644
> BS14379.complete
GAAGTTATCAGTCGACATGAGAGCCTCTTTTCTGATCAGTCGCAAGCAGC
CATGGATGGGGCAGCTGCTGCTCATGGCGAGAAACAAAGCCCTTACGCTC
CTGCTGAAGCTGTATAGGCGGACTCCCATCTTCAGACCGCGACACCTGCC
AGGAAGGAATCGGACTCAGAGCGTTGGACTTGCCCGGGATAATACGATCA
TGACCTCTGCCAAAAATACGAACCCTTCCTGTCGTATTTCCCATCTCACC
ATGTTTGGCGGACTCGTGCATCTGGATGTGCTAAGTGAGGACGACTACGT
CTATGAGGTCAGTGACATGGAAATCGGAGCGGACGGAGAAATTCTTCTGG
ACATGGACAGTCGGCGGAGACAGGGTAACTTCGAGCTGGCTCTAATGGCG
GGCGGCCAACTGGACGTGGACTCCGAGGAAGACGAAGAATTCCACGAATG
CGACTGCGAAGGATATGTGCGGTGCGTGGAGTACGGGGAGTGTGAGGGGG
GGAGCGATCTAGTGCGGACGGGTGGACGAATGGAGTCTTTGAAAAAATCT
CAGCTGCCTTCCGCGCCACCAGGTTCTTTCACAAAGCGAGGCAACCTCCC
CATCTAAAAGCTTTCTAGACCAT
BS14379.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11226-RA | 591 | CG11226-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11226-RA | 1103 | CG11226-RA | 79..669 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22837146..22837736 | 17..607 | 2955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:49:12 has no hits.
BS14379.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:24 Download gff for
BS14379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-RA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:37 Download gff for
BS14379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-RA | 70..671 | 10..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:45 Download gff for
BS14379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-RA | 79..667 | 17..605 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:25 Download gff for
BS14379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-RA | 70..671 | 10..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:41 Download gff for
BS14379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11226-RA | 79..667 | 17..605 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:41 Download gff for
BS14379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22837146..22837734 | 17..605 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:45 Download gff for
BS14379.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22830246..22830834 | 17..605 | 100 | | Plus |
BS14379.pep Sequence
Translation from 16 to 606
> BS14379.pep
MRASFLISRKQPWMGQLLLMARNKALTLLLKLYRRTPIFRPRHLPGRNRT
QSVGLARDNTIMTSAKNTNPSCRISHLTMFGGLVHLDVLSEDDYVYEVSD
MEIGADGEILLDMDSRRRQGNFELALMAGGQLDVDSEEDEEFHECDCEGY
VRCVEYGECEGGSDLVRTGGRMESLKKSQLPSAPPGSFTKRGNLPI*
BS14379.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11226-PA | 196 | CG11226-PA | 1..196 | 1..196 | 1026 | 100 | Plus |
