Clone Sequence Records
BS14380.3prime Sequence
568 bp (543 high quality bases) assembled on 2006-10-13
> BS14380.3prime
ATGGTCTAGAAAGCTTCTACCGAGCTGTTCGAAGATGGTCGACGAATAGT
TGAAGATGGCAAAGGATCCCGACATAGAAATCAGCAGGAGTAATCTTTTC
AGCTATGCCGCTGGCGAGAACTTTATTCCGCAATTTGTCAAATTCAGCTT
TATTATCGTCCTGTTGCGCTGGGTCCTTCGATAAGTTCTTGTAAAAGCAA
AAGGACTTTTCGGCCTTTTCTTCATGACCCCGTTTCAGTAGGTCCTGTGG
TGGCTCAGGAAGGGGAATGATGAGGCACAAATATAGAATGGGCAGGAAAA
TGACGACGCACGGAAGCACATGGTAGGATAGGCAATATACTAACACAAAT
CCCACTGTTATGCCACTACAGAGTGTCATCATAAAAAAAGAGCCCAGAGT
TCCACGAACGCTATTATCAGATACTTCCGCGATAAATACAGGAAAGCAAA
CTACCAAAGTGCCACCAGAAATTCCCAAAAGGACGCGACACACATAAAAA
TACAGTGATTTGCTTGCGAAGTAGATCAAGACCCAATTAAGGATATTTGG
TAGGGGCACAAAGTACAT
BS14380.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14605-PC | 807 | CG14605-RC | 256..807 | 568..17 | 2760 | 100 | Minus |
| CG14605-PA | 1359 | CG14605-RA | 256..748 | 568..76 | 2465 | 100 | Minus |
| CG14605-PB | 1299 | CG14605-RB | 196..688 | 568..76 | 2465 | 100 | Minus |
| CG14605-PA | 1359 | CG14605-RA | 808..866 | 75..17 | 295 | 100 | Minus |
| CG14605-PB | 1299 | CG14605-RB | 748..806 | 75..17 | 295 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14605-RE | 1469 | CG14605-RE | 375..926 | 568..17 | 2760 | 100 | Minus |
| CG14605-RD | 1528 | CG14605-RD | 375..867 | 568..76 | 2465 | 100 | Minus |
| CG14605-RB | 1532 | CG14605-RB | 379..871 | 568..76 | 2465 | 100 | Minus |
| CG14605-RD | 1528 | CG14605-RD | 927..985 | 75..17 | 295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7218581..7218917 | 76..412 | 1685 | 100 | Plus |
| 3R | 32079331 | 3R | 7218991..7219121 | 411..541 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 7218280..7218338 | 17..75 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:41:29 has no hits.
BS14380.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:10 Download gff for
BS14380.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-PC | 256..807 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:26 Download gff for
BS14380.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-RE | 375..929 | 14..568 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:51:41 Download gff for
BS14380.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-RE | 375..929 | 14..568 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:51:41 Download gff for
BS14380.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7218277..7218338 | 14..75 | 98 | <- | Plus |
| 3R | 7218581..7218915 | 76..410 | 100 | <- | Plus |
| 3R | 7218991..7219121 | 411..541 | 100 | <- | Plus |
| 3R | 7219182..7219208 | 542..568 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:26 Download gff for
BS14380.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3044713..3044843 | 411..541 | 100 | <- | Plus |
| arm_3R | 3044904..3044930 | 542..568 | 100 | | Plus |
| arm_3R | 3043999..3044060 | 14..75 | 98 | <- | Plus |
| arm_3R | 3044303..3044637 | 76..410 | 100 | <- | Plus |
BS14380.5prime Sequence
648 bp (550 high quality bases) assembled on 2006-10-13
> BS14380.5prime
GAAGTTATCAGTCGACATGAAAATTTGTAGCAGACGCAACCGCTGGCAGT
TGCTTTCCACCATGATACTGTGCATTATGTCGTTGACTCATGGAATATCC
CTAGGATGGTTCTCGCCCACTCTGCCCACTCTCATCTCCGACAACAGTCC
AATTGGCCATCCAATTGACATCAGCGAGGTGAAGTGGATCGGTGCTTCTT
TCGGAATTGGGTGTCTTATTTGTAATATGGTAATTTGCGTTCCAGTCTCG
TATTTCGGAATTAAGAAGTGCATGTACTTTGTGCCCCTACCAAATATCCT
TAATTGGGTCTTGATCTACTTCGCAAGCAAATCACTGTATTTTTATGTGT
GTCGCGTCCTTTTGGGAATTTCTGGTGGCACTTTGGTAGTTTGCTTTCCT
GTATTTATCGCGGAAGTATCTGATAATAGCGTTCGTGGAACTCTGGGCTC
TTTTTTTATGATGACACTCTGTAGTGGCATAACAGTGGGATTTGTGTTAG
TATATTGCCTATCCTACCATGTGCTTCCGTGCGTCGTCATTTTCCTGCCC
ATTCTATATTTGTGCCTCATCATTCCCCCTTCTGAGCCACCACAGGACCT
ACTGAAACGGGGTTCATGAAGAAAAGGCCAAAAAGTCCTTTTGCTTTT
BS14380.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14605-PA | 1359 | CG14605-RA | 1..597 | 17..613 | 2910 | 99.4 | Plus |
| CG14605-PC | 807 | CG14605-RC | 1..597 | 17..613 | 2910 | 99.4 | Plus |
| CG14605-PB | 1299 | CG14605-RB | 1..537 | 77..613 | 2635 | 99.6 | Plus |
| CG14605-PA | 1359 | CG14605-RA | 597..631 | 614..648 | 150 | 97.1 | Plus |
| CG14605-PC | 807 | CG14605-RC | 597..631 | 614..648 | 150 | 97.1 | Plus |
| CG14605-PB | 1299 | CG14605-RB | 537..571 | 614..648 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14605-RE | 1469 | CG14605-RE | 120..750 | 17..648 | 3075 | 99.2 | Plus |
| CG14605-RD | 1528 | CG14605-RD | 120..750 | 17..648 | 3075 | 99.2 | Plus |
| CG14605-RB | 1532 | CG14605-RB | 120..754 | 17..648 | 3025 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:13:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7218698..7218917 | 648..428 | 1010 | 98.2 | Minus |
| 3R | 32079331 | 3R | 7218991..7219121 | 429..299 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 7219357..7219475 | 187..69 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 7219182..7219294 | 298..186 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 7219535..7219586 | 68..17 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:13:35 has no hits.
BS14380.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:11 Download gff for
BS14380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-PC | 1..631 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:15 Download gff for
BS14380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-RD | 120..750 | 17..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:43 Download gff for
BS14380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-RD | 120..750 | 17..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:43 Download gff for
BS14380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7219535..7219586 | 17..68 | 98 | | Minus |
| 3R | 7219358..7219475 | 69..186 | 100 | <- | Minus |
| 3R | 7218991..7219121 | 299..429 | 100 | <- | Minus |
| 3R | 7219182..7219293 | 187..298 | 100 | <- | Minus |
| 3R | 7218698..7218915 | 430..648 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:15 Download gff for
BS14380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3045080..3045197 | 69..186 | 100 | <- | Minus |
| arm_3R | 3045257..3045308 | 17..68 | 98 | | Minus |
| arm_3R | 3044713..3044843 | 299..429 | 100 | <- | Minus |
| arm_3R | 3044904..3045015 | 187..298 | 100 | <- | Minus |
| arm_3R | 3044420..3044637 | 430..648 | 98 | <- | Minus |
BS14380.complete Sequence
839 bp assembled on 2006-11-01
GenBank Submission: FJ637645
> BS14380.complete
GAAGTTATCAGTCGACATGAAAATTTGTAGCAGACGCAACCGCTGGCAGT
TGCTTTCCACCATGATACTGTGCATTATGTCGTTGACTCATGGAATATCC
CTAGGATGGTTCTCGCCCACTCTGCCCACTCTCATCTCCGACAACAGTCC
AATTGGCCATCCAATTGACATCAGCGAGGTGAAGTGGATCGGTGCTTCTT
TCGGAATTGGGTGTCTTATTTGTAATATGGTAATTTGCGTTCCAGTCTCG
TATTTCGGAATTAAGAAGTGCATGTACTTTGTGCCCCTACCAAATATCCT
TAATTGGGTCTTGATCTACTTCGCAAGCAAATCACTGTATTTTTATGTGT
GTCGCGTCCTTTTGGGAATTTCTGGTGGCACTTTGGTAGTTTGCTTTCCT
GTATTTATCGCGGAAGTATCTGATAATAGCGTTCGTGGAACTCTGGGCTC
TTTTTTTATGATGACACTCTGTAGTGGCATAACAGTGGGATTTGTGTTAG
TATATTGCCTATCCTACCATGTGCTTCCGTGCGTCGTCATTTTCCTGCCC
ATTCTATATTTGTGCCTCATCATTCCCCTTCCTGAGCCACCACAGGACCT
ACTGAAACGGGGTCATGAAGAAAAGGCCGAAAAGTCCTTTTGCTTTTACA
AGAACTTATCGAAGGACCCAGCGCAACAGGACGATAATAAAGCTGAATTT
GACAAATTGCGGAATAAAGTTCTCGCCAGCGGCATAGCTGAAAAGATTAC
TCCTGCTGATTTCTATGTCGGGATCCTTTGCCATCTTCAACTATTCGTCG
ACCATCTTCGAACAGCTCGGTAGAAGCTTTCTAGACCAT
BS14380.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14605-RE | 747 | CG14605-PE | 1..747 | 77..823 | 3735 | 100 | Plus |
| CG14605-RD | 1299 | CG14605-PD | 1..688 | 77..764 | 3440 | 100 | Plus |
| CG14605-RB | 1299 | CG14605-PB | 1..688 | 77..764 | 3440 | 100 | Plus |
| CG14605-RD | 1299 | CG14605-PD | 748..806 | 765..823 | 295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14605-RE | 1469 | CG14605-RE | 120..926 | 17..823 | 4020 | 99.9 | Plus |
| CG14605-RD | 1528 | CG14605-RD | 120..867 | 17..764 | 3725 | 99.9 | Plus |
| CG14605-RB | 1532 | CG14605-RB | 120..871 | 17..764 | 3650 | 99.3 | Plus |
| CG14605-RD | 1528 | CG14605-RD | 927..985 | 765..823 | 295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7218581..7218917 | 764..428 | 1685 | 100 | Minus |
| 3R | 32079331 | 3R | 7218991..7219121 | 429..299 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 7219357..7219475 | 187..69 | 595 | 100 | Minus |
| 3R | 32079331 | 3R | 7219182..7219294 | 298..186 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 7218280..7218338 | 823..765 | 295 | 100 | Minus |
| 3R | 32079331 | 3R | 7219535..7219586 | 68..17 | 245 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:40:23 has no hits.
BS14380.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:05 Download gff for
BS14380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-RC | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:15 Download gff for
BS14380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-RC | 120..929 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:13 Download gff for
BS14380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-RE | 120..926 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:05 Download gff for
BS14380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-RC | 120..929 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:04 Download gff for
BS14380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14605-RE | 120..926 | 17..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:04 Download gff for
BS14380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7218280..7218338 | 765..823 | 100 | <- | Minus |
| 3R | 7218581..7218915 | 430..764 | 100 | <- | Minus |
| 3R | 7218991..7219121 | 299..429 | 100 | <- | Minus |
| 3R | 7219182..7219293 | 187..298 | 100 | <- | Minus |
| 3R | 7219358..7219475 | 69..186 | 100 | <- | Minus |
| 3R | 7219535..7219586 | 17..68 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:13 Download gff for
BS14380.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3044713..3044843 | 299..429 | 100 | <- | Minus |
| arm_3R | 3044904..3045015 | 187..298 | 100 | <- | Minus |
| arm_3R | 3045080..3045197 | 69..186 | 100 | <- | Minus |
| arm_3R | 3045257..3045308 | 17..68 | 98 | | Minus |
| arm_3R | 3044002..3044060 | 765..823 | 100 | <- | Minus |
| arm_3R | 3044303..3044637 | 430..764 | 100 | <- | Minus |
BS14380.pep Sequence
Translation from 16 to 822
> BS14380.pep
MKICSRRNRWQLLSTMILCIMSLTHGISLGWFSPTLPTLISDNSPIGHPI
DISEVKWIGASFGIGCLICNMVICVPVSYFGIKKCMYFVPLPNILNWVLI
YFASKSLYFYVCRVLLGISGGTLVVCFPVFIAEVSDNSVRGTLGSFFMMT
LCSGITVGFVLVYCLSYHVLPCVVIFLPILYLCLIIPLPEPPQDLLKRGH
EEKAEKSFCFYKNLSKDPAQQDDNKAEFDKLRNKVLASGIAEKITPADFY
VGILCHLQLFVDHLRTAR*
BS14380.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14605-PE | 248 | CG14605-PE | 1..248 | 21..268 | 1324 | 100 | Plus |
| CG14605-PD | 432 | CG14605-PD | 1..230 | 21..250 | 1225 | 99.6 | Plus |
| CG14605-PB | 432 | CG14605-PB | 1..230 | 21..250 | 1225 | 99.6 | Plus |
| CG14606-PB | 438 | CG14606-PB | 1..235 | 21..249 | 569 | 45.5 | Plus |
| CG14606-PA | 438 | CG14606-PA | 1..235 | 21..249 | 569 | 45.5 | Plus |
