Clone BS14386 Report

Search the DGRC for BS14386

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG15177-RA
Protein status:BS14386.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14386.3prime Sequence

532 bp (440 high quality bases) assembled on 2006-10-13

> BS14386.3prime
ATGGTCTAGAAAGCTTCTATTTTGCGTCCGGATTACAATAATTGAGCATG
GAGTCCATGTTGATAACATGGGCCATAAGATCCCTTTCTTCGTTCGATGG
AAATAGCCAGCCCAAGAACTCAACCAAAACGGGTTGTTGTGAAACAACCG
AGGAGTAGTCCTCAAACGAAATGACTCCATCCTTGTCTACATCAAACTTC
TTCATAATAAATTCAGTCATGTCCGCTCTGAGCTCAATTAGTTCATCTTC
GTCGTCGCCTTCGTGGAAGAATTTCTCGCATGCCACGCCCACCTGCTCGC
GATCGATAACTCCGGTGTTCTTGGTGTCATAAACTTCAAAGGCAAACTTC
ATACGGCGCTCCAGATCCTCTGTGGTGTACAGCTCAAAGAGATCAACCCA
GGCACGGGGACTCACGTACTTGGTATCCTTGGTGATGGCCAGAAGGGAGC
GTTCAATCACCTGAACATTGGCCACGTTGAAGAGCACCAAGTAGATCTGG
TAAAACTGATTCTTCTTCATCTGTTTGGCGCC

BS14386.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15177-PA 678 CG15177-RA 163..678 532..17 2555 99.8 Minus
CG15178-PA 600 CG15178-RA 196..246 499..449 155 92.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG15177-RA 1013 CG15177-RA 294..809 532..17 2565 99.8 Minus
CG15177-RB 989 CG15177-RB 294..785 532..17 2195 95.2 Minus
sowi-RA 830 CG15178-RA 315..771 527..68 610 75.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6628408..6628615 17..224 1040 100 Plus
3R 32079331 3R 6628829..6629028 333..532 985 99.5 Plus
3R 32079331 3R 6628664..6628775 223..334 560 100 Plus
3R 32079331 3R 6627434..6627586 375..527 315 80.4 Plus
3R 32079331 3R 6626989..6627145 68..224 260 77.7 Plus
Blast to na_te.dros performed on 2015-02-10 21:12:46 has no hits.

BS14386.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:16 Download gff for BS14386.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15177-PA 163..678 17..532 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:41 Download gff for BS14386.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15177-RA 294..813 11..532 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:28 Download gff for BS14386.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15177-RA 294..813 11..532 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:28 Download gff for BS14386.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6628404..6628614 11..223 99 <- Plus
3R 6628665..6628775 224..334 100 <- Plus
3R 6628831..6629028 335..532 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:41 Download gff for BS14386.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2454126..2454336 11..223 99 <- Plus
arm_3R 2454387..2454497 224..334 100 <- Plus
arm_3R 2454553..2454750 335..532 99   Plus

BS14386.5prime Sequence

520 bp (432 high quality bases) assembled on 2006-10-13

> BS14386.5prime
GAAGTTATCAGTCGACATGGAAAACCTAGACTCCACTGTCGATAGCACCG
AGAACAGCAAGTTCTCGGCCCTGTACGGTGGATTGATTAAGGAGATCGCT
GCAACCTCGAAGATGTCCACCTTGGACATCACCTGTTTGCTTTGCGTTTA
CTACAAGTTCGTCAGGTTCAACGGACCTGGCGCCAAACAGATGAAGAAGA
ATCAGTTCTACCAGATCTACTTGGTGCTCTTCAACGTGGCCAATGTTCAG
GTGATTGAACGCTCCCTTCTGGCCATCACCAAGGATACCAAGTACGTGAG
TCCCCGTGCCTGGGTTGATCTCTTTGAGCTGTACACCACAGAGGATCTGG
AGCGCCGTATGAAGTTTGCCTTTGAAGTTTATGACACCAAGAACACCGGA
GTTATCGATCGCGAGCAGGTGGGCGTGGCATGCGAGAAATTCTTCCACGA
AGGCGACGACGAAGATGAACTAATTGAGCTCAGAGCGGACATGACTGAAT
TTATTATGAAGAAGTTTGAT

BS14386.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG15177-PA 678 CG15177-RA 1..504 17..520 2520 100 Plus
CG15178-PA 600 CG15178-RA 181..246 197..262 180 90.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15177-RA 1013 CG15177-RA 131..635 16..520 2525 100 Plus
CG15177-RB 989 CG15177-RB 131..602 16..487 2360 100 Plus
sowi-RA 830 CG15178-RA 148..648 17..520 560 75 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6628829..6629191 378..16 1815 100 Minus
3R 32079331 3R 6628664..6628775 488..377 560 100 Minus
3R 32079331 3R 6627434..6627753 336..17 445 75.9 Minus
Blast to na_te.dros performed on 2015-02-12 17:41:59 has no hits.

BS14386.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:16 Download gff for BS14386.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15177-PA 1..504 17..520 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:32 Download gff for BS14386.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15177-RA 131..635 16..520 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:47 Download gff for BS14386.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15177-RA 131..635 16..520 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:47 Download gff for BS14386.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6628582..6628614 488..520 100 <- Minus
3R 6628665..6628775 377..487 100 <- Minus
3R 6628831..6629191 16..376 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:32 Download gff for BS14386.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2454304..2454336 488..520 100 <- Minus
arm_3R 2454387..2454497 377..487 100 <- Minus
arm_3R 2454553..2454913 16..376 100   Minus

BS14386.complete Sequence

710 bp assembled on 2006-11-01

GenBank Submission: FJ637647

> BS14386.complete
GAAGTTATCAGTCGACATGGAAAACCTAGACTCCACTGTCGATAGCACCG
AGAACAGCAAGTTCTCGGCCCTGTACGGTGGATTGATTAAGGAGATCGCT
GCAACCTCGAAGATGTCCACCTTGGACATCACCTGTTTGCTTTGCGTTTA
CTACAAGTTCGTCAGGTTCAACGGACCTGGCGCCAAACAGATGAAGAAGA
ATCAGTTCTACCAGATCTACTTGGTGCTCTTCAACGTGGCCAATGTTCAG
GTGATTGAACGCTCCCTTCTGGCCATCACCAAGGATACCAAGTACGTGAG
TCCCCGTGCCTGGGTTGATCTCTTTGAGCTGTACACCACAGAGGATCTGG
AGCGCCGTATGAAGTTTGCCTTTGAAGTTTATGACACCAAGAACACCGGA
GTTATCGATCGCGAGCAGGTGGGCGTGGCATGCGAGAAATTCTTCCACGA
AGGCGACGACGAAGATGAACTAATTGAGCTCAGAGCGGACATGACTGAAT
TTATTATGAAGAAGTTTGATGTAGACAAGGATGGAGTCATTTCGTTTGAG
GACTACTCCTCGGTTGTTTCACAACAACCCGTTTTGGTTGAGTTCTTGGG
CTGGCTATTTCCATCGAACGAAGAAAGGGATCTTATGGCCCATGTTATCA
ACATGGACTCCATGCTCAATTATTGTAATCCGGACGCAAAATAGAAGCTT
TCTAGACCAT

BS14386.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG15177-RA 678 CG15177-PA 1..678 17..694 3390 100 Plus
CG15177-RB 654 CG15177-PB 1..471 17..487 2355 100 Plus
CG15177-RB 654 CG15177-PB 471..654 511..694 920 100 Plus
sowi-RA 654 CG15178-PA 1..624 17..643 715 74.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG15177-RA 1013 CG15177-RA 131..809 16..694 3395 100 Plus
CG15177-RB 989 CG15177-RB 131..602 16..487 2360 100 Plus
CG15177-RB 989 CG15177-RB 602..785 511..694 920 100 Plus
sowi-RA 830 CG15178-RA 148..771 17..643 715 74.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6628829..6629191 378..16 1815 100 Minus
3R 32079331 3R 6628408..6628615 694..487 1040 100 Minus
3R 32079331 3R 6628664..6628775 488..377 560 100 Minus
3R 32079331 3R 6627434..6627753 336..17 445 75.9 Minus
3R 32079331 3R 6626989..6627145 643..487 260 77.7 Minus
Blast to na_te.dros performed on 2014-11-27 01:20:11 has no hits.

BS14386.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:27 Download gff for BS14386.complete
Subject Subject Range Query Range Percent Splice Strand
CG15177-RA 1..678 17..694 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:48 Download gff for BS14386.complete
Subject Subject Range Query Range Percent Splice Strand
CG15177-RA 131..813 16..700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:21 Download gff for BS14386.complete
Subject Subject Range Query Range Percent Splice Strand
CG15177-RA 132..802 17..687 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:27 Download gff for BS14386.complete
Subject Subject Range Query Range Percent Splice Strand
CG15177-RA 131..813 16..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:28 Download gff for BS14386.complete
Subject Subject Range Query Range Percent Splice Strand
CG15177-RA 132..802 17..687 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:28 Download gff for BS14386.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6628415..6628614 488..687 100 <- Minus
3R 6628665..6628775 377..487 100 <- Minus
3R 6628831..6629190 17..376 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:21 Download gff for BS14386.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2454137..2454336 488..687 100 <- Minus
arm_3R 2454387..2454497 377..487 100 <- Minus
arm_3R 2454553..2454912 17..376 100   Minus

BS14386.pep Sequence

Translation from 16 to 693

> BS14386.pep
MENLDSTVDSTENSKFSALYGGLIKEIAATSKMSTLDITCLLCVYYKFVR
FNGPGAKQMKKNQFYQIYLVLFNVANVQVIERSLLAITKDTKYVSPRAWV
DLFELYTTEDLERRMKFAFEVYDTKNTGVIDREQVGVACEKFFHEGDDED
ELIELRADMTEFIMKKFDVDKDGVISFEDYSSVVSQQPVLVEFLGWLFPS
NEERDLMAHVINMDSMLNYCNPDAK*

BS14386.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG15177-PA 225 CG15177-PA 1..225 1..225 1166 100 Plus
CG15177-PB 217 CG15177-PB 1..217 1..225 1106 96.4 Plus
sowi-PA 217 CG15178-PA 1..217 1..218 873 75.2 Plus
sunz-PA 220 CG15179-PA 1..213 1..216 507 47.2 Plus
d-cup-PA 219 CG14387-PA 3..205 4..209 421 40.8 Plus