Clone Sequence Records
BS14386.3prime Sequence
532 bp (440 high quality bases) assembled on 2006-10-13
> BS14386.3prime
ATGGTCTAGAAAGCTTCTATTTTGCGTCCGGATTACAATAATTGAGCATG
GAGTCCATGTTGATAACATGGGCCATAAGATCCCTTTCTTCGTTCGATGG
AAATAGCCAGCCCAAGAACTCAACCAAAACGGGTTGTTGTGAAACAACCG
AGGAGTAGTCCTCAAACGAAATGACTCCATCCTTGTCTACATCAAACTTC
TTCATAATAAATTCAGTCATGTCCGCTCTGAGCTCAATTAGTTCATCTTC
GTCGTCGCCTTCGTGGAAGAATTTCTCGCATGCCACGCCCACCTGCTCGC
GATCGATAACTCCGGTGTTCTTGGTGTCATAAACTTCAAAGGCAAACTTC
ATACGGCGCTCCAGATCCTCTGTGGTGTACAGCTCAAAGAGATCAACCCA
GGCACGGGGACTCACGTACTTGGTATCCTTGGTGATGGCCAGAAGGGAGC
GTTCAATCACCTGAACATTGGCCACGTTGAAGAGCACCAAGTAGATCTGG
TAAAACTGATTCTTCTTCATCTGTTTGGCGCC
BS14386.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-PA | 678 | CG15177-RA | 163..678 | 532..17 | 2555 | 99.8 | Minus |
CG15178-PA | 600 | CG15178-RA | 196..246 | 499..449 | 155 | 92.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-RA | 1013 | CG15177-RA | 294..809 | 532..17 | 2565 | 99.8 | Minus |
CG15177-RB | 989 | CG15177-RB | 294..785 | 532..17 | 2195 | 95.2 | Minus |
sowi-RA | 830 | CG15178-RA | 315..771 | 527..68 | 610 | 75.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:12:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6628408..6628615 | 17..224 | 1040 | 100 | Plus |
3R | 32079331 | 3R | 6628829..6629028 | 333..532 | 985 | 99.5 | Plus |
3R | 32079331 | 3R | 6628664..6628775 | 223..334 | 560 | 100 | Plus |
3R | 32079331 | 3R | 6627434..6627586 | 375..527 | 315 | 80.4 | Plus |
3R | 32079331 | 3R | 6626989..6627145 | 68..224 | 260 | 77.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:12:46 has no hits.
BS14386.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:16 Download gff for
BS14386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-PA | 163..678 | 17..532 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:41 Download gff for
BS14386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 294..813 | 11..532 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:44:28 Download gff for
BS14386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 294..813 | 11..532 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:44:28 Download gff for
BS14386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6628404..6628614 | 11..223 | 99 | <- | Plus |
3R | 6628665..6628775 | 224..334 | 100 | <- | Plus |
3R | 6628831..6629028 | 335..532 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:41 Download gff for
BS14386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2454126..2454336 | 11..223 | 99 | <- | Plus |
arm_3R | 2454387..2454497 | 224..334 | 100 | <- | Plus |
arm_3R | 2454553..2454750 | 335..532 | 99 | | Plus |
BS14386.5prime Sequence
520 bp (432 high quality bases) assembled on 2006-10-13
> BS14386.5prime
GAAGTTATCAGTCGACATGGAAAACCTAGACTCCACTGTCGATAGCACCG
AGAACAGCAAGTTCTCGGCCCTGTACGGTGGATTGATTAAGGAGATCGCT
GCAACCTCGAAGATGTCCACCTTGGACATCACCTGTTTGCTTTGCGTTTA
CTACAAGTTCGTCAGGTTCAACGGACCTGGCGCCAAACAGATGAAGAAGA
ATCAGTTCTACCAGATCTACTTGGTGCTCTTCAACGTGGCCAATGTTCAG
GTGATTGAACGCTCCCTTCTGGCCATCACCAAGGATACCAAGTACGTGAG
TCCCCGTGCCTGGGTTGATCTCTTTGAGCTGTACACCACAGAGGATCTGG
AGCGCCGTATGAAGTTTGCCTTTGAAGTTTATGACACCAAGAACACCGGA
GTTATCGATCGCGAGCAGGTGGGCGTGGCATGCGAGAAATTCTTCCACGA
AGGCGACGACGAAGATGAACTAATTGAGCTCAGAGCGGACATGACTGAAT
TTATTATGAAGAAGTTTGAT
BS14386.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-PA | 678 | CG15177-RA | 1..504 | 17..520 | 2520 | 100 | Plus |
CG15178-PA | 600 | CG15178-RA | 181..246 | 197..262 | 180 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-RA | 1013 | CG15177-RA | 131..635 | 16..520 | 2525 | 100 | Plus |
CG15177-RB | 989 | CG15177-RB | 131..602 | 16..487 | 2360 | 100 | Plus |
sowi-RA | 830 | CG15178-RA | 148..648 | 17..520 | 560 | 75 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6628829..6629191 | 378..16 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 6628664..6628775 | 488..377 | 560 | 100 | Minus |
3R | 32079331 | 3R | 6627434..6627753 | 336..17 | 445 | 75.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:41:59 has no hits.
BS14386.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:16 Download gff for
BS14386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-PA | 1..504 | 17..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:32 Download gff for
BS14386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..635 | 16..520 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:47 Download gff for
BS14386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..635 | 16..520 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:47 Download gff for
BS14386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6628582..6628614 | 488..520 | 100 | <- | Minus |
3R | 6628665..6628775 | 377..487 | 100 | <- | Minus |
3R | 6628831..6629191 | 16..376 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:32 Download gff for
BS14386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2454304..2454336 | 488..520 | 100 | <- | Minus |
arm_3R | 2454387..2454497 | 377..487 | 100 | <- | Minus |
arm_3R | 2454553..2454913 | 16..376 | 100 | | Minus |
BS14386.complete Sequence
710 bp assembled on 2006-11-01
GenBank Submission: FJ637647
> BS14386.complete
GAAGTTATCAGTCGACATGGAAAACCTAGACTCCACTGTCGATAGCACCG
AGAACAGCAAGTTCTCGGCCCTGTACGGTGGATTGATTAAGGAGATCGCT
GCAACCTCGAAGATGTCCACCTTGGACATCACCTGTTTGCTTTGCGTTTA
CTACAAGTTCGTCAGGTTCAACGGACCTGGCGCCAAACAGATGAAGAAGA
ATCAGTTCTACCAGATCTACTTGGTGCTCTTCAACGTGGCCAATGTTCAG
GTGATTGAACGCTCCCTTCTGGCCATCACCAAGGATACCAAGTACGTGAG
TCCCCGTGCCTGGGTTGATCTCTTTGAGCTGTACACCACAGAGGATCTGG
AGCGCCGTATGAAGTTTGCCTTTGAAGTTTATGACACCAAGAACACCGGA
GTTATCGATCGCGAGCAGGTGGGCGTGGCATGCGAGAAATTCTTCCACGA
AGGCGACGACGAAGATGAACTAATTGAGCTCAGAGCGGACATGACTGAAT
TTATTATGAAGAAGTTTGATGTAGACAAGGATGGAGTCATTTCGTTTGAG
GACTACTCCTCGGTTGTTTCACAACAACCCGTTTTGGTTGAGTTCTTGGG
CTGGCTATTTCCATCGAACGAAGAAAGGGATCTTATGGCCCATGTTATCA
ACATGGACTCCATGCTCAATTATTGTAATCCGGACGCAAAATAGAAGCTT
TCTAGACCAT
BS14386.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-RA | 678 | CG15177-PA | 1..678 | 17..694 | 3390 | 100 | Plus |
CG15177-RB | 654 | CG15177-PB | 1..471 | 17..487 | 2355 | 100 | Plus |
CG15177-RB | 654 | CG15177-PB | 471..654 | 511..694 | 920 | 100 | Plus |
sowi-RA | 654 | CG15178-PA | 1..624 | 17..643 | 715 | 74.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-RA | 1013 | CG15177-RA | 131..809 | 16..694 | 3395 | 100 | Plus |
CG15177-RB | 989 | CG15177-RB | 131..602 | 16..487 | 2360 | 100 | Plus |
CG15177-RB | 989 | CG15177-RB | 602..785 | 511..694 | 920 | 100 | Plus |
sowi-RA | 830 | CG15178-RA | 148..771 | 17..643 | 715 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6628829..6629191 | 378..16 | 1815 | 100 | Minus |
3R | 32079331 | 3R | 6628408..6628615 | 694..487 | 1040 | 100 | Minus |
3R | 32079331 | 3R | 6628664..6628775 | 488..377 | 560 | 100 | Minus |
3R | 32079331 | 3R | 6627434..6627753 | 336..17 | 445 | 75.9 | Minus |
3R | 32079331 | 3R | 6626989..6627145 | 643..487 | 260 | 77.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:20:11 has no hits.
BS14386.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:24:27 Download gff for
BS14386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 1..678 | 17..694 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:55:48 Download gff for
BS14386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..813 | 16..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:21 Download gff for
BS14386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 132..802 | 17..687 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:24:27 Download gff for
BS14386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 131..813 | 16..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:28 Download gff for
BS14386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15177-RA | 132..802 | 17..687 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:28 Download gff for
BS14386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6628415..6628614 | 488..687 | 100 | <- | Minus |
3R | 6628665..6628775 | 377..487 | 100 | <- | Minus |
3R | 6628831..6629190 | 17..376 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:21 Download gff for
BS14386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2454137..2454336 | 488..687 | 100 | <- | Minus |
arm_3R | 2454387..2454497 | 377..487 | 100 | <- | Minus |
arm_3R | 2454553..2454912 | 17..376 | 100 | | Minus |
BS14386.pep Sequence
Translation from 16 to 693
> BS14386.pep
MENLDSTVDSTENSKFSALYGGLIKEIAATSKMSTLDITCLLCVYYKFVR
FNGPGAKQMKKNQFYQIYLVLFNVANVQVIERSLLAITKDTKYVSPRAWV
DLFELYTTEDLERRMKFAFEVYDTKNTGVIDREQVGVACEKFFHEGDDED
ELIELRADMTEFIMKKFDVDKDGVISFEDYSSVVSQQPVLVEFLGWLFPS
NEERDLMAHVINMDSMLNYCNPDAK*
BS14386.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15177-PA | 225 | CG15177-PA | 1..225 | 1..225 | 1166 | 100 | Plus |
CG15177-PB | 217 | CG15177-PB | 1..217 | 1..225 | 1106 | 96.4 | Plus |
sowi-PA | 217 | CG15178-PA | 1..217 | 1..218 | 873 | 75.2 | Plus |
sunz-PA | 220 | CG15179-PA | 1..213 | 1..216 | 507 | 47.2 | Plus |
d-cup-PA | 219 | CG14387-PA | 3..205 | 4..209 | 421 | 40.8 | Plus |