Clone BS14387 Report

Search the DGRC for BS14387

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:87
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS14387.pep:
Sequenced Size:16

Clone Sequence Records

BS14387.3prime Sequence

411 bp (411 high quality bases) assembled on 2006-10-13

> BS14387.3prime
ATGGTCTAGAAAGCTTTCAATGACAATTACTATTGCGATGGCCTCGTTTA
TTCGTAATTGACTCGTGGGTGGCGTCGAAGAGTCTGGAGTTAATCCTCAG
TTGTTGGTCACTATTCTTTAAGGGCACCTTCTGTGTTGCCAGAATTGTGT
TCCAGTCAGCTGCGTCGGGATTCCCAGCTATCCATTTCCATGCAGATCCC
AGCCAGTTTATCGAGCAAGGTTTCCTCACGGGGGCACTGGCTATCCGGTT
AACACACTCCGTTGCGCCTTTGAGATGAGTACTCAAAAAAGATCTCAATC
CTCCTTTCCTACAAGGAAGCGGCATCTTAAGCGATTTCGTCCATAAGTTG
TCGCATTTTTCCAAGGTCAACCACGTGAGCCAGCTTGAAGACTCCATGTC
GACTGATAACT

BS14387.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:47:10 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 09:07:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5096243..5096623 17..397 1890 99.7 Plus
2R 25286936 2R 2795671..2795821 276..126 440 86.1 Minus
2R 25286936 2R 2864053..2864238 99..293 380 82.1 Plus
2R 25286936 2R 3564433..3564543 259..149 375 89.2 Minus
3L 28110227 3L 24122711..24122880 276..99 300 79.2 Minus
2R 25286936 2R 2795578..2795645 392..325 205 86.8 Minus
Blast to na_te.dros performed on 2015-02-11 09:07:18 has no hits.

BS14387.3prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:07 Download gff for BS14387.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5096243..5096631 17..408 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:07 Download gff for BS14387.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5096243..5096631 17..408 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:24 Download gff for BS14387.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 983748..984136 17..408 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:24 Download gff for BS14387.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 983748..984136 17..408 98   Plus

BS14387.5prime Sequence

411 bp (411 high quality bases) assembled on 2006-10-13

> BS14387.5prime
GAAGTTATCAGTCGACATGGAGTCTTCAAGCTGGCTCACGTGGTTGACCT
TGGAAAAATGCGACAACTTATGGACGAAATCGCTTAAGATGCCGCTTCCT
TGTAGGAAAGGAGGATTGAGATCTTTTTTGAGTACTCATCTCAAAGGCGC
AACGGAGTGTGTTAACCGGATAGCCAGTGCCCCCGTGAGGAAACCTTGCT
CGATAAACTGGCTGGGATCTGCATGGAAATGGATAGCTGGGAATCCCGAC
GCAGCTGACTGGAACACAATTCTGGCAACACAGAAGGTGCCCTTAAAGAA
TAGTGACCAACAACTGAGGATTAACTCCAGACTCTTCGACGCCACCCACG
AGTCAATTACGAATAAACGAGGCCATCGCAATAGTAATTGTCATTGAAAG
CTTTCTAGACC

BS14387.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 11:47:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-02 17:52:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5096243..5096623 397..17 1890 99.7 Minus
2R 25286936 2R 2795671..2795821 138..288 440 86.1 Plus
2R 25286936 2R 2864053..2864238 315..121 380 82.1 Minus
2R 25286936 2R 3564433..3564543 155..265 375 89.2 Plus
3L 28110227 3L 24122711..24122880 138..315 300 79.2 Plus
2R 25286936 2R 2795578..2795645 22..89 205 86.8 Plus
Blast to na_te.dros performed on 2015-02-02 17:52:06 has no hits.

BS14387.5prime Sim4 Records

Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:52 Download gff for BS14387.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5096243..5096631 6..397 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:52 Download gff for BS14387.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5096243..5096631 6..397 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:14 Download gff for BS14387.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 983748..984136 6..397 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:14 Download gff for BS14387.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 983748..984136 6..397 98   Minus

BS14387.complete Sequence

413 bp assembled on 2006-11-01

> BS14387.complete
GAAGTTATCAGTCGACATGGAGTCTTCAAGCTGGCTCACGTGGTTGACCT
TGGAAAAATGCGACAACTTATGGACGAAATCGCTTAAGATGCCGCTTCCT
TGTAGGAAAGGAGGATTGAGATCTTTTTTGAGTACTCATCTCAAAGGCGC
AACGGAGTGTGTTAACCGGATAGCCAGTGCCCCCGTGAGGAAACCTTGCT
CGATAAACTGGCTGGGATCTGCATGGAAATGGATAGCTGGGAATCCCGAC
GCAGCTGACTGGAACACAATTCTGGCAACACAGAAGGTGCCCTTAAAGAA
TAGTGACCAACAACTGAGGATTAACTCCAGACTCTTCGACGCCACCCACG
AGTCAATTACGAATAAACGAGGCCATCGCAATAGTAATTGTCATTGAAAG
CTTTCTAGACCAT

BS14387.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:44:50 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:44:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5096243..5096623 397..17 1890 99.7 Minus
2R 25286936 2R 2795671..2795821 138..288 440 86.1 Plus
2R 25286936 2R 2864053..2864238 315..121 380 82.1 Minus
2R 25286936 2R 3564433..3564543 155..265 375 89.2 Plus
3L 28110227 3L 24122711..24122880 138..315 300 79.2 Plus
2R 25286936 2R 2795578..2795645 22..89 205 86.8 Plus
Blast to na_te.dros performed on 2014-11-27 14:44:49 has no hits.

BS14387.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 21:46:55 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 21:46:55 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:48 Download gff for BS14387.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5096244..5096623 17..396 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:48 Download gff for BS14387.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5096244..5096623 17..396 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:49 Download gff for BS14387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 983749..984128 17..396 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:49 Download gff for BS14387.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 983749..984128 17..396 99   Minus

BS14387.pep Sequence

Translation from 16 to 396

> BS14387.pep
MESSSWLTWLTLEKCDNLWTKSLKMPLPCRKGGLRSFLSTHLKGATECVN
RIASAPVRKPCSINWLGSAWKWIAGNPDAADWNTILATQKVPLKNSDQQL
RINSRLFDATHESITNKRGHRNSNCH*
Sequence BS14387.pep has no blast hits.