Clone BS14395 Report

Search the DGRC for BS14395

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG14294-RA
Protein status:BS14395.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14395.3prime Sequence

450 bp (450 high quality bases) assembled on 2006-10-13

> BS14395.3prime
ATGGTCTAGAAAGCTTTCAGTGCCAGATTTTAAGTCTGCTTGCTCCGCTC
GCCTGTCGCTTAGTGGTAATTTGGAGGAGTGACCTCAGCCTTTCCATGTG
CAGACGGGTGACGTGCTCGATGCAGTCCTTAAACGTTTGCTCCAGCTCAC
CACTGTAGAATACCTCGATGCATTTGGTCGTTTCAGTGTATGCACTATCC
AATACTTCACGGGCAGCAACCTTCTTCTGATTCTCCAGCTTGACGTAGAA
ATCGTGGATCTGCGCATCCACGTTTTTGGCTGCCCTAGATGCGGTGTGGA
TTCTATGCTGGTCGTCGTAGTTCATCTTGGAGGCCACAGCTTTGGCCATT
TGCTCCCATCGCGGATGCGCTGCTATCCATATCGTACACAAAAGTGTTAT
CAAAATAATACCGAAAATGGTTGACAGCCAACTCATGTCGACTGATAACT

BS14395.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14294-PA 420 CG14294-RA 1..420 436..17 2100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14294-RA 602 CG14294-RA 76..495 436..17 2100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18901770..18902189 17..436 2100 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:34:49 has no hits.

BS14395.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:32 Download gff for BS14395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14294-PA 1..420 17..436 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:11 Download gff for BS14395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14294-RA 68..495 17..443 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:37 Download gff for BS14395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14294-RA 68..495 17..443 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:37 Download gff for BS14395.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18901770..18902197 17..443 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:11 Download gff for BS14395.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14727492..14727919 17..443 99   Plus

BS14395.5prime Sequence

450 bp (450 high quality bases) assembled on 2006-10-13

> BS14395.5prime
GAAGTTATCAGTCGACATGAGTTGGCTGTCAACCATTTTCGGTATTATTT
TGATAACACTTTTGTGTACGATATGGATAGCAGCGCATCCGCGATGGGAG
CAAATGGCCAAAGCTGTGGCCTCCAAGATGAACTACGACGACCAGCATAG
AATCCACACCGCATCTAGGGCAGCCAAAAACGTGGATGCGCAGATCCACG
ATTTCTACGTCAAGCTGGAGAATCAGAAGAAGGTTGCTGCCCGTGAAGTA
TTGGATAGTGCATACACTGAAACGACCAAATGCATCGAGGTATTCTACAG
TGGTGAGCTGGAGCAAACGTTTAAGGACTGCATCGAGCACGTCACCCGTC
TGCACATGGAAAGGCTGAGGTCACTCCTCCAAATTACCACTAAGCGACAG
GCGAGCGGAGCAAGCAGACTTAAAATCTGGCACTGAAAGCTTTCTAGACC

BS14395.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14294-PA 420 CG14294-RA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14294-RA 602 CG14294-RA 76..495 17..436 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18901770..18902189 436..17 2100 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:07:21 has no hits.

BS14395.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:33 Download gff for BS14395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14294-PA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:25 Download gff for BS14395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14294-RA 68..495 10..436 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:14 Download gff for BS14395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14294-RA 68..495 10..436 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:14 Download gff for BS14395.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18901770..18902197 10..436 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:25 Download gff for BS14395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14727492..14727919 10..436 99   Minus

BS14395.complete Sequence

452 bp assembled on 2006-11-01

GenBank Submission: FJ637648

> BS14395.complete
GAAGTTATCAGTCGACATGAGTTGGCTGTCAACCATTTTCGGTATTATTT
TGATAACACTTTTGTGTACGATATGGATAGCAGCGCATCCGCGATGGGAG
CAAATGGCCAAAGCTGTGGCCTCCAAGATGAACTACGACGACCAGCATAG
AATCCACACCGCATCTAGGGCAGCCAAAAACGTGGATGCGCAGATCCACG
ATTTCTACGTCAAGCTGGAGAATCAGAAGAAGGTTGCTGCCCGTGAAGTA
TTGGATAGTGCATACACTGAAACGACCAAATGCATCGAGGTATTCTACAG
TGGTGAGCTGGAGCAAACGTTTAAGGACTGCATCGAGCACGTCACCCGTC
TGCACATGGAAAGGCTGAGGTCACTCCTCCAAATTACCACTAAGCGACAG
GCGAGCGGAGCAAGCAGACTTAAAATCTGGCACTGAAAGCTTTCTAGACC
AT

BS14395.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14294-RA 420 CG14294-PA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14294-RA 602 CG14294-RA 76..495 17..436 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18901770..18902189 436..17 2100 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:45:42 has no hits.

BS14395.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:46 Download gff for BS14395.complete
Subject Subject Range Query Range Percent Splice Strand
CG14294-RA 1..420 17..436 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:23 Download gff for BS14395.complete
Subject Subject Range Query Range Percent Splice Strand
CG14294-RA 68..495 10..436 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:58 Download gff for BS14395.complete
Subject Subject Range Query Range Percent Splice Strand
CG14294-RA 76..494 17..435 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:46 Download gff for BS14395.complete
Subject Subject Range Query Range Percent Splice Strand
CG14294-RA 68..495 10..436 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:15 Download gff for BS14395.complete
Subject Subject Range Query Range Percent Splice Strand
CG14294-RA 76..494 17..435 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:15 Download gff for BS14395.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18901771..18902189 17..435 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:58 Download gff for BS14395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14727493..14727911 17..435 100   Minus

BS14395.pep Sequence

Translation from 16 to 435

> BS14395.pep
MSWLSTIFGIILITLLCTIWIAAHPRWEQMAKAVASKMNYDDQHRIHTAS
RAAKNVDAQIHDFYVKLENQKKVAAREVLDSAYTETTKCIEVFYSGELEQ
TFKDCIEHVTRLHMERLRSLLQITTKRQASGASRLKIWH*

BS14395.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14294-PA 139 CG14294-PA 1..139 1..139 724 100 Plus