Clone Sequence Records
BS14396.3prime Sequence
561 bp (554 high quality bases) assembled on 2006-10-13
> BS14396.3prime
ATGGTCTAGAAAGCTTTCAGTTGATCCCCGAATTCGGTGCTAGATTTTGG
CTGCCTGCGCCGGAAAACTTTCCGGCCATCTTGCGCGGACCCCAGCGCAC
CTGCTGGCGGTGGGTCATTCGACGAGACCTCTGTGCCTTCTGCTTGGCCT
CCACTGCAGCACAGGCCGCTTTGTAGGCCGCCTGCTTGGTCTTCTCGAAG
TCCGTCTTGGCCTCGGTCATCTGGCGGGTTAGATTCTCCACCCGGTGCTT
GGCAGCCTCCAGGAGCTGCGTCTTCTCGGCCAGCTCCTGCTGCGCTCCAC
TGGCCACGTTCTCGATATTGGCCAGATTGGACGTGGCGGCTATCACAAGG
TTCTTCAGCTGATTGAGTTGCGATTGGGCCTCGTGGGCAGCCGATGCGGC
GGCATTGGCATTCGCTTGGGTGTTTTGTAGGGACGAGGTCACCTCAGTGA
CAACCGCATCCGCCTCGGTCATCTCCTGCTGCAGCTGTTCAACAATCTGC
TGCTTTCCGGCCAGTGCCGCCTCCGCCGCACGAGCGGATTGAGCTGCCTT
GGCGGCCAGTT
BS14396.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14840-PA | 903 | CG14840-RA | 359..903 | 561..17 | 2725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14840-RA | 1006 | CG14840-RA | 389..933 | 561..17 | 2725 | 100 | Minus |
CG14841-RA | 956 | CG14841-RA | 719..788 | 197..128 | 200 | 85.7 | Minus |
CG11694-RA | 935 | CG11694-RA | 610..687 | 313..236 | 195 | 83.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14260281..14260825 | 17..561 | 2725 | 100 | Plus |
3R | 32079331 | 3R | 14261559..14261628 | 128..197 | 200 | 85.7 | Plus |
3R | 32079331 | 3R | 8311451..8311528 | 236..313 | 195 | 83.3 | Plus |
2R | 25286936 | 2R | 16826480..16826541 | 196..135 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:07:27 has no hits.
BS14396.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:33 Download gff for
BS14396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-PA | 359..903 | 17..561 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:24 Download gff for
BS14396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-RA | 389..942 | 7..561 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:59 Download gff for
BS14396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-RA | 389..942 | 7..561 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:59 Download gff for
BS14396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14260272..14260825 | 7..561 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:24 Download gff for
BS14396.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10085994..10086547 | 7..561 | 99 | | Plus |
BS14396.5prime Sequence
661 bp (500 high quality bases) assembled on 2006-10-13
> BS14396.5prime
GAAGTTATCAGTCGACATGCCTGGCACGAAAGCGCTGCTCCTCGTCCTGC
TACTGCTGCGTGCGTTCCCTCGACTGGAGAGCTACCACTACCGACCCGCC
GAAACGAATGACAAGCAATGCCTGTCCGCATTGTACGGCGATGCCAGCAT
CGATGGAACTGGTGGGGCGGGCGGTTTGGGAGGCGGATCCGAAGGCTGTG
GGGAACCTAATTCGAAGAAAGGGGTTGGCTGCAGCAGCGGAACCGGCGTC
TTTGGTCGCGGAGATCCCAAGCAGAAGGCCTCCAACATTGCCCAAAAAGC
CGCCCAGGAGGCCAAGGCAGCCAGCGATTCGCAGATGGCAGCTGCCGAGG
CGGCTGCATCCCAGGTCAAAAACGAACTGGCCGCCAAGGCAGCTCAATCC
GCTCGTGCGGCGGAGGCGGCACTGGCCGGAAAGCAGCAGATTGTTGAACA
GCTGCAGCAGGAGATGACCGAGGCGGATGCGGTTGTCACTGAGGTGACCT
CGTCCCTACAAAACACCCAAGCGAATGCCAATGCCGCCGCATCGGCTGCC
CACGAGGCCCAATCGCAACTCAATCAGCTGAAGAACCTTGTGATAGCCGC
CACGTCCAATCTGGCCAATATCCAAAACGTGCCCAGTGGAGCGCAACAGG
AGCTGGCCAAA
BS14396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14840-PA | 903 | CG14840-RA | 1..642 | 17..658 | 3110 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14840-RA | 1006 | CG14840-RA | 31..672 | 17..658 | 3150 | 99.4 | Plus |
CG14841-RA | 956 | CG14841-RA | 255..443 | 275..463 | 195 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14260542..14261183 | 658..17 | 3150 | 99.4 | Minus |
3R | 32079331 | 3R | 14261904..14262092 | 463..275 | 195 | 73.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:35:39 has no hits.
BS14396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:33 Download gff for
BS14396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-PA | 1..642 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:04 Download gff for
BS14396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-RA | 31..672 | 17..658 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:12 Download gff for
BS14396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-RA | 31..672 | 17..658 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:12 Download gff for
BS14396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14260542..14261179 | 21..658 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:04 Download gff for
BS14396.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10086264..10086901 | 21..658 | 99 | -> | Minus |
BS14396.complete Sequence
935 bp assembled on 2006-11-01
GenBank Submission: FJ637649
> BS14396.complete
GAAGTTATCAGTCGACATGCCTGGCACGAAAGCGCTGCTCCTCGTCCTGC
TACTGCTGCGTGCGTTCCCTCGACTGGAGAGCTACCACTACCGACCCGCC
GAAACGAATGACAAGCAATGCCTGTCCGCATTGTACGGCGATGCCAGCAT
CGATGGAACTGGTGGGGCGGGCGGTTTGGGAGGCGGATCCGAAGGCTGTG
GGGAACCTAATTCGAAGAAAGGGGTTGGCTGCAGCAGCGGAACCGGCGTC
TTTGGTCGCGGAGATCCCAAGCAGAAGGCCTCCAACATTGCCCAAAAAGC
CGCCCAGGAGGCCAAGGCAGCCAGCGATTCGCAGATGGCAGCTGCCGAGG
CGGCTGCATCCCAGGTCAAAAACGAACTGGCCGCCAAGGCAGCTCAATCC
GCTCGTGCGGCGGAGGCGGCACTGGCCGGAAAGCAGCAGATTGTTGAACA
GCTGCAGCAGGAGATGACCGAGGCGGATGCGGTTGTCACTGAGGTGACCT
CGTCCCTACAAAACACCCAAGCGAATGCCAATGCCGCCGCATCGGCTGCC
CACGAGGCCCAATCGCAACTCAATCAGCTGAAGAACCTTGTGATAGCCGC
CACGTCCAATCTGGCCAATATCGAGAACGTGGCCAGTGGAGCGCAGCAGG
AGCTGGCCGAGAAGACGCAGCTCCTGGAGGCTGCCAAGCACCGGGTGGAG
AATCTAACCCGCCAGATGACCGAGGCCAAGACGGACTTCGAGAAGACCAA
GCAGGCGGCCTACAAAGCGGCCTGTGCTGCAGTGGAGGCCAAGCAGAAGG
CACAGAGGTCTCGTCGAATGACCCACCGCCAGCAGGTGCGCTGGGGTCCG
CGCAAGATGGCCGGAAAGTTTTCCGGCGCAGGCAGCCAAAATCTAGCACC
GAATTCGGGGATCAACTGAAAGCTTTCTAGACCAT
BS14396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14840-RA | 903 | CG14840-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
CG14841-RA | 825 | CG14841-PA | 717..786 | 739..808 | 200 | 85.7 | Plus |
CG14841-RA | 825 | CG14841-PA | 253..441 | 275..463 | 195 | 73.5 | Plus |
CG11694-RA | 786 | CG11694-PA | 541..618 | 623..700 | 195 | 83.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14840-RA | 1006 | CG14840-RA | 31..933 | 17..919 | 4515 | 100 | Plus |
CG14841-RA | 956 | CG14841-RA | 719..788 | 739..808 | 200 | 85.7 | Plus |
CG14841-RA | 956 | CG14841-RA | 255..443 | 275..463 | 195 | 73.5 | Plus |
CG11694-RA | 935 | CG11694-RA | 610..687 | 623..700 | 195 | 83.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14260281..14261183 | 919..17 | 4515 | 100 | Minus |
3R | 32079331 | 3R | 14261559..14261628 | 808..739 | 200 | 85.7 | Minus |
3R | 32079331 | 3R | 8311451..8311528 | 700..623 | 195 | 83.3 | Minus |
3R | 32079331 | 3R | 14261904..14262092 | 463..275 | 195 | 73.5 | Minus |
2R | 25286936 | 2R | 16826480..16826541 | 740..801 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:30:11 has no hits.
BS14396.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:06 Download gff for
BS14396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-RA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:17 Download gff for
BS14396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-RA | 31..942 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:55 Download gff for
BS14396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-RA | 31..932 | 17..918 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:06 Download gff for
BS14396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-RA | 31..942 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:23 Download gff for
BS14396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14840-RA | 31..932 | 17..918 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:23 Download gff for
BS14396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14260282..14261183 | 17..918 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:55 Download gff for
BS14396.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10086004..10086905 | 17..918 | 100 | | Minus |
BS14396.pep Sequence
Translation from 16 to 918
> BS14396.pep
MPGTKALLLVLLLLRAFPRLESYHYRPAETNDKQCLSALYGDASIDGTGG
AGGLGGGSEGCGEPNSKKGVGCSSGTGVFGRGDPKQKASNIAQKAAQEAK
AASDSQMAAAEAAASQVKNELAAKAAQSARAAEAALAGKQQIVEQLQQEM
TEADAVVTEVTSSLQNTQANANAAASAAHEAQSQLNQLKNLVIAATSNLA
NIENVASGAQQELAEKTQLLEAAKHRVENLTRQMTEAKTDFEKTKQAAYK
AACAAVEAKQKAQRSRRMTHRQQVRWGPRKMAGKFSGAGSQNLAPNSGIN
*
BS14396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14840-PA | 300 | CG14840-PA | 1..300 | 1..300 | 1484 | 100 | Plus |
CG14841-PA | 274 | CG14841-PA | 59..265 | 55..267 | 559 | 59.6 | Plus |
CG34459-PC | 305 | CG34459-PC | 59..295 | 28..262 | 521 | 49.2 | Plus |
CG34459-PB | 305 | CG34459-PB | 59..295 | 28..262 | 521 | 49.2 | Plus |
CG34459-PA | 305 | CG34459-PA | 59..295 | 28..262 | 521 | 49.2 | Plus |