Clone BS14396 Report

Search the DGRC for BS14396

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:143
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG14840-RA
Protein status:BS14396.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS14396.3prime Sequence

561 bp (554 high quality bases) assembled on 2006-10-13

> BS14396.3prime
ATGGTCTAGAAAGCTTTCAGTTGATCCCCGAATTCGGTGCTAGATTTTGG
CTGCCTGCGCCGGAAAACTTTCCGGCCATCTTGCGCGGACCCCAGCGCAC
CTGCTGGCGGTGGGTCATTCGACGAGACCTCTGTGCCTTCTGCTTGGCCT
CCACTGCAGCACAGGCCGCTTTGTAGGCCGCCTGCTTGGTCTTCTCGAAG
TCCGTCTTGGCCTCGGTCATCTGGCGGGTTAGATTCTCCACCCGGTGCTT
GGCAGCCTCCAGGAGCTGCGTCTTCTCGGCCAGCTCCTGCTGCGCTCCAC
TGGCCACGTTCTCGATATTGGCCAGATTGGACGTGGCGGCTATCACAAGG
TTCTTCAGCTGATTGAGTTGCGATTGGGCCTCGTGGGCAGCCGATGCGGC
GGCATTGGCATTCGCTTGGGTGTTTTGTAGGGACGAGGTCACCTCAGTGA
CAACCGCATCCGCCTCGGTCATCTCCTGCTGCAGCTGTTCAACAATCTGC
TGCTTTCCGGCCAGTGCCGCCTCCGCCGCACGAGCGGATTGAGCTGCCTT
GGCGGCCAGTT

BS14396.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-PA 903 CG14840-RA 359..903 561..17 2725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-RA 1006 CG14840-RA 389..933 561..17 2725 100 Minus
CG14841-RA 956 CG14841-RA 719..788 197..128 200 85.7 Minus
CG11694-RA 935 CG11694-RA 610..687 313..236 195 83.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14260281..14260825 17..561 2725 100 Plus
3R 32079331 3R 14261559..14261628 128..197 200 85.7 Plus
3R 32079331 3R 8311451..8311528 236..313 195 83.3 Plus
2R 25286936 2R 16826480..16826541 196..135 190 87.1 Minus
Blast to na_te.dros performed on 2015-01-31 10:07:27 has no hits.

BS14396.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:33 Download gff for BS14396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14840-PA 359..903 17..561 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:24 Download gff for BS14396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 389..942 7..561 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:59 Download gff for BS14396.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 389..942 7..561 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:59 Download gff for BS14396.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14260272..14260825 7..561 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:24 Download gff for BS14396.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10085994..10086547 7..561 99   Plus

BS14396.5prime Sequence

661 bp (500 high quality bases) assembled on 2006-10-13

> BS14396.5prime
GAAGTTATCAGTCGACATGCCTGGCACGAAAGCGCTGCTCCTCGTCCTGC
TACTGCTGCGTGCGTTCCCTCGACTGGAGAGCTACCACTACCGACCCGCC
GAAACGAATGACAAGCAATGCCTGTCCGCATTGTACGGCGATGCCAGCAT
CGATGGAACTGGTGGGGCGGGCGGTTTGGGAGGCGGATCCGAAGGCTGTG
GGGAACCTAATTCGAAGAAAGGGGTTGGCTGCAGCAGCGGAACCGGCGTC
TTTGGTCGCGGAGATCCCAAGCAGAAGGCCTCCAACATTGCCCAAAAAGC
CGCCCAGGAGGCCAAGGCAGCCAGCGATTCGCAGATGGCAGCTGCCGAGG
CGGCTGCATCCCAGGTCAAAAACGAACTGGCCGCCAAGGCAGCTCAATCC
GCTCGTGCGGCGGAGGCGGCACTGGCCGGAAAGCAGCAGATTGTTGAACA
GCTGCAGCAGGAGATGACCGAGGCGGATGCGGTTGTCACTGAGGTGACCT
CGTCCCTACAAAACACCCAAGCGAATGCCAATGCCGCCGCATCGGCTGCC
CACGAGGCCCAATCGCAACTCAATCAGCTGAAGAACCTTGTGATAGCCGC
CACGTCCAATCTGGCCAATATCCAAAACGTGCCCAGTGGAGCGCAACAGG
AGCTGGCCAAA

BS14396.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-PA 903 CG14840-RA 1..642 17..658 3110 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-RA 1006 CG14840-RA 31..672 17..658 3150 99.4 Plus
CG14841-RA 956 CG14841-RA 255..443 275..463 195 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14260542..14261183 658..17 3150 99.4 Minus
3R 32079331 3R 14261904..14262092 463..275 195 73.5 Minus
Blast to na_te.dros performed on 2015-02-10 16:35:39 has no hits.

BS14396.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:33 Download gff for BS14396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14840-PA 1..642 17..658 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:04 Download gff for BS14396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 31..672 17..658 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:12 Download gff for BS14396.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 31..672 17..658 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:12 Download gff for BS14396.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14260542..14261179 21..658 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:04 Download gff for BS14396.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10086264..10086901 21..658 99 -> Minus

BS14396.complete Sequence

935 bp assembled on 2006-11-01

GenBank Submission: FJ637649

> BS14396.complete
GAAGTTATCAGTCGACATGCCTGGCACGAAAGCGCTGCTCCTCGTCCTGC
TACTGCTGCGTGCGTTCCCTCGACTGGAGAGCTACCACTACCGACCCGCC
GAAACGAATGACAAGCAATGCCTGTCCGCATTGTACGGCGATGCCAGCAT
CGATGGAACTGGTGGGGCGGGCGGTTTGGGAGGCGGATCCGAAGGCTGTG
GGGAACCTAATTCGAAGAAAGGGGTTGGCTGCAGCAGCGGAACCGGCGTC
TTTGGTCGCGGAGATCCCAAGCAGAAGGCCTCCAACATTGCCCAAAAAGC
CGCCCAGGAGGCCAAGGCAGCCAGCGATTCGCAGATGGCAGCTGCCGAGG
CGGCTGCATCCCAGGTCAAAAACGAACTGGCCGCCAAGGCAGCTCAATCC
GCTCGTGCGGCGGAGGCGGCACTGGCCGGAAAGCAGCAGATTGTTGAACA
GCTGCAGCAGGAGATGACCGAGGCGGATGCGGTTGTCACTGAGGTGACCT
CGTCCCTACAAAACACCCAAGCGAATGCCAATGCCGCCGCATCGGCTGCC
CACGAGGCCCAATCGCAACTCAATCAGCTGAAGAACCTTGTGATAGCCGC
CACGTCCAATCTGGCCAATATCGAGAACGTGGCCAGTGGAGCGCAGCAGG
AGCTGGCCGAGAAGACGCAGCTCCTGGAGGCTGCCAAGCACCGGGTGGAG
AATCTAACCCGCCAGATGACCGAGGCCAAGACGGACTTCGAGAAGACCAA
GCAGGCGGCCTACAAAGCGGCCTGTGCTGCAGTGGAGGCCAAGCAGAAGG
CACAGAGGTCTCGTCGAATGACCCACCGCCAGCAGGTGCGCTGGGGTCCG
CGCAAGATGGCCGGAAAGTTTTCCGGCGCAGGCAGCCAAAATCTAGCACC
GAATTCGGGGATCAACTGAAAGCTTTCTAGACCAT

BS14396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-RA 903 CG14840-PA 1..903 17..919 4515 100 Plus
CG14841-RA 825 CG14841-PA 717..786 739..808 200 85.7 Plus
CG14841-RA 825 CG14841-PA 253..441 275..463 195 73.5 Plus
CG11694-RA 786 CG11694-PA 541..618 623..700 195 83.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-RA 1006 CG14840-RA 31..933 17..919 4515 100 Plus
CG14841-RA 956 CG14841-RA 719..788 739..808 200 85.7 Plus
CG14841-RA 956 CG14841-RA 255..443 275..463 195 73.5 Plus
CG11694-RA 935 CG11694-RA 610..687 623..700 195 83.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14260281..14261183 919..17 4515 100 Minus
3R 32079331 3R 14261559..14261628 808..739 200 85.7 Minus
3R 32079331 3R 8311451..8311528 700..623 195 83.3 Minus
3R 32079331 3R 14261904..14262092 463..275 195 73.5 Minus
2R 25286936 2R 16826480..16826541 740..801 190 87.1 Plus
Blast to na_te.dros performed on 2014-11-26 15:30:11 has no hits.

BS14396.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:37:06 Download gff for BS14396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 1..903 17..919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:10:17 Download gff for BS14396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 31..942 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:55 Download gff for BS14396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 31..932 17..918 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:37:06 Download gff for BS14396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 31..942 17..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:23 Download gff for BS14396.complete
Subject Subject Range Query Range Percent Splice Strand
CG14840-RA 31..932 17..918 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:23 Download gff for BS14396.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14260282..14261183 17..918 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:55 Download gff for BS14396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10086004..10086905 17..918 100   Minus

BS14396.pep Sequence

Translation from 16 to 918

> BS14396.pep
MPGTKALLLVLLLLRAFPRLESYHYRPAETNDKQCLSALYGDASIDGTGG
AGGLGGGSEGCGEPNSKKGVGCSSGTGVFGRGDPKQKASNIAQKAAQEAK
AASDSQMAAAEAAASQVKNELAAKAAQSARAAEAALAGKQQIVEQLQQEM
TEADAVVTEVTSSLQNTQANANAAASAAHEAQSQLNQLKNLVIAATSNLA
NIENVASGAQQELAEKTQLLEAAKHRVENLTRQMTEAKTDFEKTKQAAYK
AACAAVEAKQKAQRSRRMTHRQQVRWGPRKMAGKFSGAGSQNLAPNSGIN
*

BS14396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG14840-PA 300 CG14840-PA 1..300 1..300 1484 100 Plus
CG14841-PA 274 CG14841-PA 59..265 55..267 559 59.6 Plus
CG34459-PC 305 CG34459-PC 59..295 28..262 521 49.2 Plus
CG34459-PB 305 CG34459-PB 59..295 28..262 521 49.2 Plus
CG34459-PA 305 CG34459-PA 59..295 28..262 521 49.2 Plus