Clone Sequence Records
BS14402.complete Sequence
1793 bp assembled on 2009-12-07
GenBank Submission: KX806153
> BS14402.complete
GAAGTTATCAGTCGACATGGAGCTGTGCGGCAATGTGATGACCAACTCCA
AGTACGAGATGTTCCGGCTGAAATGCCTCTACTGCAGCATAGAGAGCGAG
CTGAAGGATTGGGAGCTGTTCATCGTCCATGTGAAATCGGCGCACTACTG
CGAAGACGAGGACGTTAGGATTAATGAAATCAAAGAGGATACCGAGGAGC
TATACAGCGTCGTTGACGCGGCGGACCCAGCCATCGCCTATGGGCCGGAT
GAGTTCTTCGAGGTGATCGAAAACAGCAATGGGGTCGATCAATGGATGGA
AGCTGATAGCAAGGATATCCAGTACGAGGAAGACGCCACCGCTTGGTCTG
CAGCTACAAACAATTCCTGGGAGTTCGGTCCAGGCGGCAGCTCTTTGGAA
CTTCCAGCCGGAAAGGAAGTCACACAAATGGACGAGTCTTCCCAAAATCA
CATACCCCTAAACACAGACGATGATGATGTTGATTGTAGTGACTTCTTTA
TGTCTGAGGATGACTTGGCACCTCCTAGAAAACCTGGACGTCCGCCCAGG
CGAACAAGACCAGGACAGGTTTTCAAGTTCAAAGTTTCGTTTATTCGGAG
CAATCCCCGTGTGCTGCATTTGATCCAAGCGTACAAAGAGCATCCCTGCC
TGTGGAACCCTTCCGATGAACACTACCAGGACGAGCCTGCACGAAGCATG
GCCTACGAGGCGATAATGGAACGCATGGACCGCAAGGCCAATGTTCTCTT
CACCGTGGAAGAACTGAAGAAAACGCTCGAGCAACTGCACGTGCAGTACA
CGCTGGCTTTGGAGACAAAACAAAGGGGAAAGCTTGTTGGACTTGCAGCG
CGTTACTTTGCCAAGTGCGAGTTCCTCAGTGTGGCGCCTGTTGTAACGCC
AAGGGAGAACGAGGAGGACAACGACTTGACTGCAATTAAGCTTAATTTTA
AGGAGGAAAACCTGATAACCACCTCATTCATAGAGACCTATGCCAACTAT
CCCGTGCTGTATAATCAAGCGTTGCCAGACTTTGGCTCAATAGAGATACG
TGCAGATGCCTTCAAAAGAATGGCAAAGGAATTCCAGCCAGTGGTGAAGG
CCAACGAAACGGACGTTTACATTGCGGTCAACAAGCTGCGCCGTTGGCTT
TACGATGCCATTCGTCGCCTCAAATCCAAGGAACTAATTCAGAAGTGCAG
CAAGCAAGAGGTTCAGTATCTGCAAATGTGCAGCTTCTTGCCCGCCAAGG
GTTCCGAAAGTCAGGTGCTGTACTGTGACTACTGCGATAAACGTTTCCAC
GGCGACTACAACCTACGGGTGCACATCGTCAAGGCGCACGAGGTGGGCGA
CCTACCGTACCTCTGCTCGTTCTGCCCGAGGCGCTTCGACCGCCACGTAG
ACATGGACCGTCACAAGCTGCGTTCCCACTTCGAACGCAAGTTGAAGTGC
CAGTACTGCGAAAAATCGTTCGCCGTGGATACCGACCTAAAGGTGCACAC
ACTAATCCACACGGGCGAGCGGCCTCACGTCTGTGACATCTGCGGCAAGA
CATTCCGGCTCAAGCTACTCCTGGACCACCACGTCAACGGAGTTCACCTG
AACATTAGACCCTACAGCTGCAATATGTGCACCAAAACCTTCCGCAAGAA
GTTCGAGCTGGCCAACCATATCAAAGGACATCTGAATATCCGTGATAAGA
AGTGCGAGTACTGTGATGCTACGTTCTATGACCATTCTTCGCTTTCCAGA
CATCGCCGCAGCCACAGATCGGAATGAAAGCTTTCTAGACCAT
BS14402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1603-RB | 1761 | CG1603-PB | 1..1761 | 17..1777 | 8805 | 100 | Plus |
| CG1603-RA | 1761 | CG1603-PA | 1..1761 | 17..1777 | 8805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1603-RB | 2368 | CG1603-RB | 126..1888 | 16..1778 | 8815 | 100 | Plus |
| CG1603-RA | 2130 | CG1603-RA | 126..1888 | 16..1778 | 8815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7514326..7515165 | 1778..939 | 4200 | 100 | Minus |
| 2R | 25286936 | 2R | 7515220..7515584 | 940..576 | 1825 | 100 | Minus |
| 2R | 25286936 | 2R | 7515967..7516265 | 314..16 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 7515643..7515908 | 577..312 | 1330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:40:33 has no hits.
BS14402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:16:20 Download gff for
BS14402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 1..1761 | 17..1777 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:26 Download gff for
BS14402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 107..1866 | 17..1776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:54:29 Download gff for
BS14402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 127..1886 | 17..1776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:58 Download gff for
BS14402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 107..1866 | 17..1776 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:54:19 Download gff for
BS14402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 127..1886 | 17..1776 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:54:19 Download gff for
BS14402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7515643..7515906 | 314..577 | 100 | <- | Minus |
| 2R | 7514328..7515163 | 941..1776 | 100 | <- | Minus |
| 2R | 7515220..7515582 | 578..940 | 100 | <- | Minus |
| 2R | 7515968..7516264 | 17..313 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:54:29 Download gff for
BS14402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3401833..3402668 | 941..1776 | 100 | <- | Minus |
| arm_2R | 3402725..3403087 | 578..940 | 100 | <- | Minus |
| arm_2R | 3403148..3403411 | 314..577 | 100 | <- | Minus |
| arm_2R | 3403473..3403769 | 17..313 | 100 | | Minus |
BS14402.3prime Sequence
870 bp (703 high quality bases) assembled on 2006-10-13
> BS14402.3prime
ATGGTCTAGAAAGCTTTCATTCCGATCTGTGGCTGCGGCGATGTCTGGAA
AGCGAAGAATGGTCATAGAACGTAGCATCACAGTACTCGCACTTCTTATC
ACGGATATTCAGATGTCCTTTGATATGGTTGGCCAGCTCGAACTTCTTGC
GGAAGGTTTTGGTGCACATATTGCAGCTGTAGGGTCTAATGTTCAGGTGA
ACTCCGTTGACGTGGTGGTCCAGGAGTAGCTTGAGCCGGAATGTCTTGCC
GCAGATGTCACAGACGTGAGGCCGCTCGCCCGTGTGGATTAGTGTGTGCA
CCTTTAGGTCGGTATCCACGGCGAACGATTTTTCGCAGTACTGGCACTTC
AACTTGCGTTCGAAGTGGGAACGCAGCTTGTGACGGTCCATGTCTACGTG
GCGGTCGAAGCGCCTCGGGCAGAACGAGCAGAGGTACGGTAGGTCGCCCA
CCTCGTGCGCCTTGACGATGTGCACCCGTAGGTTGTAGTCGCCGTGGAAA
CGTTTATCGCAGTAGTCACAGTACAGCACCTGACTTTCGGAACCCTTGGC
GGGCAAGAAGCTGCACATTTGCAGATACTGAACCTCTTGCTTGCTGCACT
TCTGAATTAGTTCCTTGGATTTGAGGCGACGAATGGCATCGTAAAGCCAA
CGGCGCAGCTTGTTGACCGCAATGTAAACGTCCGTTTCGTTGGCCTTCAC
CACTGGCTGGAATTCCTTTGCCATTCTTTTGAAGGCATCTGCACGTATCT
CTATTTGAGCCCAAGTCTGGCAACGCTTGATTATACAGCACGGGATAGTT
GGCATAGGTCTCTTTGAATGAGGTGGTTATCAGGTTTTCCTCCTTAAATT
AAGCTTAATTGCAGTCAAGT
BS14402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1603-PA | 1761 | CG1603-RA | 908..1761 | 870..17 | 4145 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1603-RB | 2368 | CG1603-RB | 1034..1888 | 870..16 | 4200 | 99.5 | Minus |
| CG1603-RA | 2130 | CG1603-RA | 1034..1888 | 870..16 | 4200 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7514326..7515157 | 16..848 | 4085 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:33:53 has no hits.
BS14402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:34 Download gff for
BS14402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-PA | 908..1761 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:45:49 Download gff for
BS14402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 1034..1893 | 9..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:38:23 Download gff for
BS14402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 1034..1893 | 9..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:38:23 Download gff for
BS14402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7514321..7515163 | 9..853 | 99 | <- | Plus |
| 2R | 7515220..7515236 | 854..870 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:45:49 Download gff for
BS14402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3401826..3402668 | 9..853 | 99 | <- | Plus |
| arm_2R | 3402725..3402741 | 854..870 | 100 | | Plus |
BS14402.5prime Sequence
897 bp (758 high quality bases) assembled on 2006-10-13
> BS14402.5prime
GAAGTTATCAGTCGACATGGAGCTGTGCGGCAATGTGATGACCAACTCCA
AGTACGAGATGTTCCGGCTGAAATGCCTCTACTGCAGCATAGAGAGCGAG
CTGAAGGATTGGGAGCTGTTCATCGTCCATGTGAAATCGGCGCACTACTG
CGAAGACGAGGACGTTAGGATTAATGAAATCAAAGAGGATACCGAGGAGC
TATACAGCGTCGTTGACGCGGCGGACCCAGCCATCGCCTATGGGCCGGAT
GAGTTCTTCGAGGTGATCGAAAACAGCAATGGGGTCGATCAATGGATGGA
AGCTGATAGCAAGGATATCCAGTACGAGGAAGACGCCACCGCTTGGTCTG
CAGCTACAAACAATTCCTGGGAGTTCGGTCCAGGCGGCAGCTCTTTGGAA
CTTCCAGCCGGAAAGGAAGTCACACAAATGGACGAGTCTTCCCAAAATCA
CATACCCCTAAACACAGACGATGATGATGTTGATTGTAGTGACTTCTTTA
TGTCTGAGGATGACTTGGCACCTCCTAGAAAACCTGGACGTCCGCCCAGG
CGAACAAGACCAGGACAGGTTTTCAAGTTCAAAGTTTCGTTTATTCGGAG
CAATCCCCGTGTGCTGCATTTGATCCAAGCGTACAAAGAGCATCCCTGCC
TGTGGAACCCTTCCGATGAACACTACCAGGACGAGCCTGCACGAAGCATG
GCCTACGAGGCGATAATGGAACGCATGGACCGCAAGGCCAATGTTCTCTT
CACCGTGGAAGAACTGAAGAAAACGCTCGAGCAACTGCACGTGCAGTACA
CGCTGGCTTTGGAGACAAAACAAAAGGGAAAGCTTGTTGGACTTGCAGCG
CGTTACTTTGCCAAGTGCGAGTTCCTCAGTGTGGCGCCTGTTGTAAC
BS14402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1603-PA | 1761 | CG1603-RA | 1..881 | 17..897 | 4380 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1603-RB | 2368 | CG1603-RB | 126..1007 | 16..897 | 4395 | 99.9 | Plus |
| CG1603-RA | 2130 | CG1603-RA | 126..1007 | 16..897 | 4395 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 02:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7515263..7515584 | 897..576 | 1595 | 99.7 | Minus |
| 2R | 25286936 | 2R | 7515967..7516265 | 314..16 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 7515643..7515908 | 577..312 | 1330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 02:22:14 has no hits.
BS14402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:35 Download gff for
BS14402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:10:46 Download gff for
BS14402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 126..1007 | 16..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 03:04:49 Download gff for
BS14402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1603-RA | 126..1007 | 16..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 03:04:49 Download gff for
BS14402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7515263..7515582 | 578..897 | 99 | <- | Minus |
| 2R | 7515643..7515906 | 314..577 | 100 | <- | Minus |
| 2R | 7515968..7516265 | 16..313 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:10:46 Download gff for
BS14402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3402768..3403087 | 578..897 | 99 | <- | Minus |
| arm_2R | 3403148..3403411 | 314..577 | 100 | <- | Minus |
| arm_2R | 3403473..3403770 | 16..313 | 100 | | Minus |
BS14402.pep Sequence
Translation from 16 to 1776
> BS14402.pep
MELCGNVMTNSKYEMFRLKCLYCSIESELKDWELFIVHVKSAHYCEDEDV
RINEIKEDTEELYSVVDAADPAIAYGPDEFFEVIENSNGVDQWMEADSKD
IQYEEDATAWSAATNNSWEFGPGGSSLELPAGKEVTQMDESSQNHIPLNT
DDDDVDCSDFFMSEDDLAPPRKPGRPPRRTRPGQVFKFKVSFIRSNPRVL
HLIQAYKEHPCLWNPSDEHYQDEPARSMAYEAIMERMDRKANVLFTVEEL
KKTLEQLHVQYTLALETKQRGKLVGLAARYFAKCEFLSVAPVVTPRENEE
DNDLTAIKLNFKEENLITTSFIETYANYPVLYNQALPDFGSIEIRADAFK
RMAKEFQPVVKANETDVYIAVNKLRRWLYDAIRRLKSKELIQKCSKQEVQ
YLQMCSFLPAKGSESQVLYCDYCDKRFHGDYNLRVHIVKAHEVGDLPYLC
SFCPRRFDRHVDMDRHKLRSHFERKLKCQYCEKSFAVDTDLKVHTLIHTG
ERPHVCDICGKTFRLKLLLDHHVNGVHLNIRPYSCNMCTKTFRKKFELAN
HIKGHLNIRDKKCEYCDATFYDHSSLSRHRRSHRSE*
BS14402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1603-PB | 586 | CG1603-PB | 1..586 | 1..586 | 3156 | 100 | Plus |
| CG1603-PA | 586 | CG1603-PA | 1..586 | 1..586 | 3156 | 100 | Plus |
| CG1602-PA | 577 | CG1602-PA | 1..530 | 1..583 | 805 | 31.4 | Plus |
| az2-PA | 593 | CG1605-PA | 1..547 | 1..586 | 732 | 30.1 | Plus |
| rgr-PA | 856 | CG8643-PA | 433..818 | 202..583 | 351 | 25.9 | Plus |
