Clone Sequence Records
BS14403.3prime Sequence
813 bp (681 high quality bases) assembled on 2006-10-13
> BS14403.3prime
ATGGTCTAGAAAGCTTCTATCCTCTGAATTTTTTGAAGAGCGGATGCACG
CTGCCAATGTTCTTTTTACGATGTTCGTAGTAGATGGCATCATCTCCGCC
AGACATGGAGCTCAGTCCGCCGACACGTCTGACGGCGCCGCCCGAGCCAC
TGGGACGGTAGCCCGGCTCGCCCGGCAGCTTCTCATCCTCGCAGTCCAAA
TCGGAAGCGGATAGGACCAACTGCAGCAGTTGTCCCTGCTCCTCCTGTGT
GCCGTACATCAAATCCGAGTCCGTGTCCATGCCCTTGAGATGCGTGATAA
CCTTGTAGCTATAGCCCTGGTTGACCAAGAACCGCTGTCGCTTGCGGGAG
TAGCTCATCTCCATGGTATCCTGCGAGACGAGTGTATAGAAGAAGGCGTT
GTATTCCTCGGCAATGGCACCCTTCTTAGCACGCAGAATACGACCCAGAC
GCTGGGCCTCCTGACGACGAGAGCCGCCATGCGAAGAGATCTGGATAAGC
ACATTAGCCTCGGGCAAATCGAAACTGGTGTCTGCCACTTTGGACACGAA
GATTGTATTAACCTTGGAGTTAAACTTAAAGTTCTGGAGGATCTGGATAC
GTTCGTTCTGCGAGGTGGGACCATAGATGAAAGGCTTGTTCATCTTGATC
GCATAGTGTTTTAGCGCAAACACATTATCTGAGAAGACGATTGTTTTGTC
GCCTCGTTGCTCGTGATATTTAATAAGAAACTGGCAGCTGCGGAACTTGA
AGGGATTCATCACATAAAGCAACATCTTTTTTGGAGGTCTTGGTGCCCAG
GTACTCGCGATAG
BS14403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8019-PA | 2397 | hay-RA | 1602..2397 | 813..17 | 3845 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hay-RB | 2511 | CG8019-RB | 1668..2464 | 813..16 | 3905 | 99.4 | Minus |
| hay-RA | 2604 | CG8019-RA | 1761..2557 | 813..16 | 3905 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10633374..10633922 | 564..16 | 2745 | 100 | Minus |
| 3L | 28110227 | 3L | 10633069..10633320 | 813..561 | 1155 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:25:04 has no hits.
BS14403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:35 Download gff for
BS14403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8019-PA | 1602..2397 | 17..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 00:11:19 Download gff for
BS14403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 1761..2560 | 12..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:29 Download gff for
BS14403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 1761..2560 | 12..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:29 Download gff for
BS14403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10633069..10633318 | 563..813 | 98 | -> | Minus |
| 3L | 10633376..10633925 | 12..562 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 00:11:19 Download gff for
BS14403.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10626169..10626418 | 563..813 | 98 | -> | Minus |
| arm_3L | 10626476..10627025 | 12..562 | 99 | | Minus |
BS14403.5prime Sequence
757 bp (755 high quality bases) assembled on 2006-10-13
> BS14403.5prime
GAAGTTATCAGTCGACATGGGACCGCCGAAAAAATCGAGAAAGGATCGCA
GCGGTGGTGACAAGTTCGGCAAAAAGCGGCGTGCCGAGGATGAGGCTTTC
ACCCAACTGGTGGACGACAATGATAGTTTGGATGCCACAGAATCGGAAGG
AATTCCGGGTGCAGCGTCCAAGAATGCGGAGACCAATGACGAGCAAATCA
ATACGGATGAGTACGGCGCCAAGGATTACCGGTCGCAGATGCAACTGCGT
CCGGATCACGGAAATCGACCACTTTGGGTTGCGCCCAATGGTCACGTCTT
CCTGGAATCATTCTCGCCCGTCTATAAGCATGCCCACGATTTTCTTATCG
CCATTTCGGAGCCCGTCTGCCGACCCGAACACATTCACGAGTACAAACTT
ACCGCATACAGTTTATATGCCGCCGTTTCGGTGGGACTGCAAACCCATGA
CATTGTGGAATACTTGAAGAGATTGAGCAAGACCAGCATTCCCGAAGGCA
TCCTTGAGTTTATACGACTCTGCACCCTATCCTATGGCAAGGTCAAGCTG
GTCTTGAAGCATAACAAGTACTTTATCGAGTCACCACATCCTGAGGTGCT
GCAAAAGTTACTTAAGGATCCAGTGATCCAGAAATGCCGCCTCATACGCA
GCGAGGGAGAGGATTTCATTCAGGGAACCCTGGACGGCAAGGCTATTACT
CAATTCGGGACCAAACTGCCGCCAGGAGCCACGGACAAGCCGACACCAGA
TCCTGCA
BS14403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 00:21:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8019-PA | 2397 | hay-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hay-RB | 2511 | CG8019-RB | 67..807 | 17..757 | 3705 | 100 | Plus |
| hay-RA | 2604 | CG8019-RA | 160..900 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 19:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10631519..10632208 | 68..757 | 3450 | 100 | Plus |
| 3L | 28110227 | 3L | 10631408..10631460 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 19:05:48 has no hits.
BS14403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:51:36 Download gff for
BS14403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8019-PA | 1..740 | 17..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 05:10:08 Download gff for
BS14403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 160..899 | 17..756 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:54:41 Download gff for
BS14403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 160..899 | 17..756 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 23:54:41 Download gff for
BS14403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10631408..10631459 | 17..68 | 100 | -> | Plus |
| 3L | 10631520..10632207 | 69..756 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 05:10:08 Download gff for
BS14403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10624508..10624559 | 17..68 | 100 | -> | Plus |
| arm_3L | 10624620..10625307 | 69..756 | 100 | | Plus |
BS14403.complete Sequence
2429 bp assembled on 2010-05-04
GenBank Submission: KX802346
> BS14403.complete
GAAGTTATCAGTCGACATGGGACCGCCGAAAAAATCGAGAAAGGATCGCA
GCGGTGGTGACAAGTTCGGCAAAAAGCGGCGTGCCGAGGATGAGGCTTTC
ACCCAACTGGTGGACGACAATGATAGTTTGGATGCCACAGAATCGGAAGG
AATTCCGGGTGCAGCGTCCAAGAATGCGGAGACCAATGACGAGCAAATCA
ATACGGATGAGTACGGCGCCAAGGATTACCGGTCGCAGATGCAACTGCGT
CCGGATCACGGAAATCGACCACTTTGGGTTGCGCCCAATGGTCACGTCTT
CCTGGAATCATTCTCGCCCGTCTATAAGCATGCCCACGATTTTCTTATCG
CCATTTCGGAGCCCGTCTGCCGACCCGAACACATTCACGAGTACAAACTT
ACCGCATACAGTTTATATGCCGCCGTTTCGGTGGGACTGCAAACCCATGA
CATTGTGGAATACTTGAAGAGATTGAGCAAGACCAGCATTCCCGAAGGCA
TCCTTGAGTTTATACGACTCTGCACCCTATCCTATGGCAAGGTCAAGCTG
GTCTTGAAGCATAACAAGTACTTTATCGAGTCACCACATCCTGAGGTGCT
GCAAAAGTTACTTAAGGATCCAGTGATCCAGAAATGCCGCCTCATACGCA
GCGAGGGAGAGGATTTCATTCAGGGAACCCTGGACGGCAAGGCTATTACT
CAATTCGGGACCAAACTGCCGCCAGGAGCCACGGACAAGCCGACACCAGA
TCCTGCAGCAGCCGCAGGAGCTGATGGAACCACAGCAGTGCCAGAAGATA
TCACAGACTTCTACGAGAAGATCGACAAAGAGGAGGAGGACGAGGATGAG
GCCAATCTGAAGACCGTGTCGTTTGAGGTGGCCCAGGAGAAGATCGAAGT
GATTCAGAAACGATGCATCGAGATAGAGCATCCTCTATTGGCGGAGTACG
ATTTCCGCAACGATACCAACAATCCAGACATTAATATTGACCTCAAACCC
GCTGCCGTTCTGCGTCCATATCAGGAGAAGAGTCTGCGCAAGATGTTTGG
CAATGGAAGAGCCCGCTCTGGTGTTATTGTGCTTCCTTGTGGTGCAGGAA
AATCCCTAGTGGGTGTCACAGCATGCTGCACCGTACGAAAGAGGGCACTA
GTTCTGTGCAACAGTGGTGTTTCTGTGGAGCAGTGGAAGCAGCAGTTTAA
GATGTGGTCCACAGCTGATGACAGCATGATTTGTAGATTCACCTCTGAAG
CAAAAGACAAACCCATGGGCTGTGGAATTCTTGTGACCACATACTCTATG
ATAACGCACACGCAGAAGAGATCATGGGAAGCAGAGCAGACCATGCGTTG
GCTGCAGGAGCAGGAATGGGGCATCATGGTGCTGGACGAGGTGCACACCA
TCCCAGCCAAAATGTTCCGTCGCGTGCTGACCATCGTTCAATCTCATTGC
AAGCTGGGATTGACGGCCACACTACTGCGTGAAGATGACAAGATTGCCGA
TCTCAACTTCCTCATTGGACCCAAACTGTACGAGGCCAACTGGTTAGAGC
TGCAAAAGAAGGGATATATTGCACGCGTGCAGTGCGCCGAGGTGTGGTGT
CCCATGTCACCGGAGTTCTATCGCGAGTACCTGACCACCAAGACCTCCAA
AAAGATGTTGCTCTATGTGATGAATCCCTCCAAGTTCCGCAGCTGCCAGT
TTCTTATTAAATATCACGAGCAACGAGGCGACAAAACAATCGTCTTCTCA
GATAATGTGTTTGCGCTAAAACACTATGCGATCAAGATGAACAAGCCTTT
CATCTATGGTCCCACCTCGCAGAACGAACGTATCCAGATCCTCCAGAACT
TTAAGTTTAACTCCAAGGTTAATACAATCTTCGTGTCCAAAGTGGCAGAC
ACCAGTTTCGATTTGCCCGAGGCTAATGTGCTTATCCAGATCTCTTCGCA
TGGCGGCTCTCGTCGTCAGGAGGCCCAGCGTCTGGGTCGTATTCTGCGTG
CTAAGAAGGGTGCCATTGCCGAGGAATACAACGCCTTCTTCTATACACTC
GTCTCGCAGGATACCATGGAGATGAGCTACTCCCGCAAGCGACAGCGGTT
CTTGGTCAACCAGGGCTATAGCTACAAGGTTATCACGCATCTCAAGGGCA
TGGACACGGACTCGGATTTGATGTACGGCACACAGGAGGAGCAGGGACAA
CTGCTGCAGTTGGTCCTATCCGCTTCCGATTTGGACTGCGAGGATGAGAA
GCTGCCGGGCGAGCCGGGCTACCGTCCCAGTGGCTCGGGCGGCGCCGTCA
GACGTGTCGGCGGACTGAGCTCCATGTCTGGCGGAGATGATGCCATCTAC
TACGAACATCGTAAAAAGAACATTGGCAGCGTGCATCCGCTCTTCAAAAA
ATTCAGAGGATAGAAGCTTTCTAGACCAT
BS14403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hay-RB | 2397 | CG8019-PB | 1..2397 | 17..2413 | 11985 | 100 | Plus |
| hay-RA | 2397 | CG8019-PA | 1..2397 | 17..2413 | 11985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hay-RB | 2511 | CG8019-RB | 67..2464 | 17..2414 | 11990 | 100 | Plus |
| hay-RA | 2604 | CG8019-RA | 160..2557 | 17..2414 | 11990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:33:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10631519..10633320 | 68..1869 | 9010 | 100 | Plus |
| 3L | 28110227 | 3L | 10633374..10633922 | 1866..2414 | 2745 | 100 | Plus |
| 3L | 28110227 | 3L | 10631408..10631460 | 17..69 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:33:37 has no hits.
BS14403.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-04 18:06:19 Download gff for
BS14403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RB | 67..2463 | 17..2413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:49 Download gff for
BS14403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 160..2556 | 17..2413 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:16 Download gff for
BS14403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hay-RA | 160..2556 | 17..2413 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:16 Download gff for
BS14403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10631408..10631459 | 17..68 | 100 | -> | Plus |
| 3L | 10631520..10633318 | 69..1867 | 100 | -> | Plus |
| 3L | 10633376..10633921 | 1868..2413 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:49 Download gff for
BS14403.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10624508..10624559 | 17..68 | 100 | -> | Plus |
| arm_3L | 10624620..10626418 | 69..1867 | 100 | -> | Plus |
| arm_3L | 10626476..10627021 | 1868..2413 | 100 | | Plus |
BS14403.pep Sequence
Translation from 16 to 2412
> BS14403.pep
MGPPKKSRKDRSGGDKFGKKRRAEDEAFTQLVDDNDSLDATESEGIPGAA
SKNAETNDEQINTDEYGAKDYRSQMQLRPDHGNRPLWVAPNGHVFLESFS
PVYKHAHDFLIAISEPVCRPEHIHEYKLTAYSLYAAVSVGLQTHDIVEYL
KRLSKTSIPEGILEFIRLCTLSYGKVKLVLKHNKYFIESPHPEVLQKLLK
DPVIQKCRLIRSEGEDFIQGTLDGKAITQFGTKLPPGATDKPTPDPAAAA
GADGTTAVPEDITDFYEKIDKEEEDEDEANLKTVSFEVAQEKIEVIQKRC
IEIEHPLLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRAR
SGVIVLPCGAGKSLVGVTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTA
DDSMICRFTSEAKDKPMGCGILVTTYSMITHTQKRSWEAEQTMRWLQEQE
WGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTATLLREDDKIADLNFLI
GPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSKKMLLY
VMNPSKFRSCQFLIKYHEQRGDKTIVFSDNVFALKHYAIKMNKPFIYGPT
SQNERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRR
QEAQRLGRILRAKKGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQG
YSYKVITHLKGMDTDSDLMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEP
GYRPSGSGGAVRRVGGLSSMSGGDDAIYYEHRKKNIGSVHPLFKKFRG*
BS14403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hay-PB | 798 | CG8019-PB | 1..798 | 1..798 | 4186 | 100 | Plus |
| hay-PA | 798 | CG8019-PA | 1..798 | 1..798 | 4186 | 100 | Plus |
